BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18340.1 Length=1483 Score E Sequences producing significant alignments: (Bits) Value Ahg893755 jgi|Araly1|893755|Al_scaffold_0006_1751 1659 0.0 Ahg893752 jgi|Araly1|893752|Al_scaffold_0006_1748 959 0.0 Ahg941356 jgi|Araly1|941356|scaffold_601900.1 828 0.0 Ahg350938 jgi|Araly1|350938|fgenesh1_pg.C_scaffold_6001531 697 0.0 > Ahg893755 jgi|Araly1|893755|Al_scaffold_0006_1751 Length=1407 Score = 1659 bits (898), Expect = 0.0 Identities = 1221/1377 (89%), Gaps = 22/1377 (2%) Strand=Plus/Plus Query 113 ATGGCGGATTCGACGGCGGACGCGACGGAAACAAACGCCGATACTCTGACACTGAGGCGG 172 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 1 ATGGCGGATTCGACGGCGGACGCGACGGAAACAAACGCAGATACTCTGAGTCTGAGGCGG 60 Query 173 GAGTTGAAGAAGGTACTGACGGAGAATTTA-A--ACGACGGAGGAGTTAAAGATCGCGTT 229 |||||||||||||||||||||||||||||| | ||||||||||||| |||||| ||||| Sbjct 61 GAGTTGAAGAAGGTACTGACGGAGAATTTATACGACGACGGAGGAGTCAAAGATGGCGTT 120 Query 230 GAGACCGTGAAATCGATTGATGAGGCGATTAGAATCCTGAATCGACTGAAGATAGTAGAA 289 ||||| |||||||||||||||||||||||||||||||||||| | ||||| | || |||| Sbjct 121 GAGACTGTGAAATCGATTGATGAGGCGATTAGAATCCTGAATTGTCTGAA-A-AG-AGAA 177 Query 290 TCGAAGAAGCGGAAGCGGGAATCTGATAGTTCTTCGGTTGAAGTTCCGAAAGAGTTCAAG 349 |||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||| Sbjct 178 TCGAAGAAGCGGAAGCGGGAATCTGATATTTCTCCGGTGGAAGTTCCGAAAGAGTTCAAG 237 Query 350 TGTACACTCTCGAAGACGATCATGATCGATCCTGTGATCATATT-TTCTGGGCAGACGTA 408 ||||||||||| ||||||||||||||||||||| ||||||| || ||||||||||||||| Sbjct 238 TGTACACTCTCCAAGACGATCATGATCGATCCTTTGATCAT-TTCTTCTGGGCAGACGTA 296 Query 409 TGAAAAGAGATATATCACAGAGTGGCTGAACCATGACCTTACATGTCCCACAGCCAAACA 468 ||||||||||||||||||||| ||||| |||||| ||| ||||||||||| | ||||| | Sbjct 297 TGAAAAGAGATATATCACAGAATGGCTCAACCATAACCGTACATGTCCCAAAACCAAAGA 356 Query 469 AGTCCTTTATCGAGTTTGTTTGACACCCAACCATTTGATCAATGAGTTGATTACGCGATG 528 | |||| | || ||| || ||||||||||||||||||||||||| |||||||||| ||| Sbjct 357 ACTCCTCTCTCAAGTCCGTATGACACCCAACCATTTGATCAATGACTTGATTACGCAATG 416 Query 529 GTGTCTTGCTAACAA-ATA--TGATCGGCCAGCCCCAAAACCATCTGATATTG-ACTA-T 583 |||||||| |||||| | | |||||||||| ||| ||||||||||| ||| | || | Sbjct 417 GTGTCTTGTTAACAACAAAGTTGATCGGCCAAAACCACAACCATCTGATTTTGAAATAGT 476 Query 584 -GTAACGGAGCTGTTCACTGATGGCATCGAATCGTTGCTTCAGCGGATTTCCTCTCCTTC 642 ||||| ||| || |||||| || ||||||| | |||||||||||||||||||||||||| Sbjct 477 AGTAACTGAGATGGTCACTGGTGACATCGAACCATTGCTTCAGCGGATTTCCTCTCCTTC 536 Query 643 CTCCTCGGTTGCAGATCAGACAGAAGCTGCAAAAGAGCTAGCCCTCCAGACCGAAAAATT 702 |||||||||||||||||||| ||||||||||||||||| |||||||| ||| ||||| Sbjct 537 CTCCTCGGTTGCAGATCAGATGGAAGCTGCAAAAGAGCTTGCCCTCCAAACCTCGAAATT 596 Query 703 TGTCAATGTCCGTGACTTCTTTATCAAGGAACTCCCTGATTCGATCACCAGGTTACTCAC 762 |||||||||||||||||||||| || || |||||||||| ||||||||||| ||||| Sbjct 597 TGTCAATGTCCGTGACTTCTTTGTCGCCAAAATCCCTGATTCCATCACCAGGTTGCTCAC 656 Query 763 TCCGCTCTCTGTTTTGGGCGATGAGGTAGACTCGAATCCCGAGCTTCAAGAGAATATCGT 822 ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 657 TCCTCTCTCTGTTTTGGGCGATGACGTAGACTCGAATCCCGAGCTTCAAGAGAATATTAT 716 Query 823 CACAGCGTTGTTCAACATGTCGACTTTCGAGAAGAATAAAACAGTACTTGCTGAAAACCA 882 |||| | |||||||||||||| ||||| ||| ||||||||||| ||||||||||||||| Sbjct 717 CACATCATTGTTCAACATGTCTACTTTTGAGCAGAATAAAACACTACTTGCTGAAAACCC 776 Query 883 TCAAGTGATCCCACTGCTTGCAAAGTCTATGAAGCAGGGGTCAGTTGTGACAAGAAGAAA 942 |||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct 777 TCAAGTGATCCCACTGCTTGCAAAGTCTTTGAAGCAGGGGACAGTTGTGACACGAAGAAA 836 Query 943 CGCTACATTGACTTTAGCGTCACTTTCAGACATTGATTCTAACAAGATCATCATAGGGAA 1002 |||| || ||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 837 CGCTGCAGCGACTTTAATGTCACTTGCAGACATTGATTCTAACAAGATCATCATAGGGAA 896 Query 1003 CTCGGTAGCACTCAAGGCTCTGATAGATCTAATCGGGGAGTTGGATGACTTATCAGCTAC 1062 ||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||| || Sbjct 897 CTCGGAAGCACTCAAGGCTCTGATAGATCTAATCTTGGACTCGGATGACTTATCAGCCAC 956 Query 1063 TCA-TGATGCT-CTTTGCGCTGTTATAGACCTCTGTTGTGATGAAAGGGAGAACTGGAAA 1120 || ||| ||| || |||| || || ||||||||| ||||||| ||||||||| ||| Sbjct 957 -CAATGAAGCTGCTAA-CGCTATTTTAAACCTCTGTTTTGATGAATCGGAGAACTGCAAA 1014 Query 1121 AAGGCGATCTCGTTGGGGTTGGCTCCTGCTGCAATCAAAAATATCAAAGCAAGAAGAAAT 1180 ||||| |||||||||||||||||| |||| | || |||||||||||||||| |||||||| Sbjct 1015 AAGGCAATCTCGTTGGGGTTGGCTTCTGCCGTAACCAAAAATATCAAAGCAGGAAGAAAT 1074 Query 1181 TTGTTTGAATCCTTAGCTGCCTTGGCATTGATTTCTCCACACGAACGCGTTATCCAGGAA 1240 || ||| | ||||||| ||||| |||||| |||||||||||||| ||| || ||||| Sbjct 1075 GTGGATGAGTTGTTAGCTGTCTTGGTATTGATCTCTCCACACGAACGTGTTGTCGAGGAA 1134 Query 1241 GTGGCTAATCTAGGGGTTATCTATGATCTGTTAAGTATCTTGAGGAAAACAAGTTGCATG 1300 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 1135 ATGGATAATGTAGGGGTTATCTATGATCTGTTAAGTATCTTGAGGAAAACAAGTTCCTTG 1194 Query 1301 GTGACTTGTGAGAACGCTGTAGTGATCGTAGGCAACATGTATGCTAAAAGCAGAGAAAGG 1360 |||||||||||||||| ||||||||| || ||||||||||| |||||||||||||||| Sbjct 1195 GTGACTTGTGAGAACGTTGTAGTGATTGTCCACAACATGTATGTTAAAAGCAGAGAAAGG 1254 Query 1361 TCTATTAAGAAAATCC-TGGCAGAAGAGGAGAATCAACACAAGACATTTACAAAGATTGC 1419 |||||| |||| ||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 1255 TCTATTTTGAAA-TCCCTGGCAGAAGAGGAGAATCAACACAAGACATTTACAAAGCTTGC 1313 Query 1420 AACGC-AAGGATCAGTTGTTGCGGTGATGAAAGCACAAGGGATTTTACAGTGTATTA 1475 || || ||| ||||||| ||| |||| || ||||||||||||||||||| |||||| Sbjct 1314 AA-GCCAAGAATCAGTTCTTGTGGTGGGGAGAGCACAAGGGATTTTACAGGGTATTA 1369 > Ahg893752 jgi|Araly1|893752|Al_scaffold_0006_1748 Length=1377 Score = 959 bits (519), Expect = 0.0 Identities = 1122/1397 (80%), Gaps = 106/1397 (8%) Strand=Plus/Plus Query 127 GGCGGACGCGACGGAAACAAACGCCGATACTCTGACACTGAGGCGGGAGTTGA-AGAAGG 185 |||||||||||||||||| ||||||||||||||| | |||||||||| | |||| | Sbjct 3 GGCGGACGCGACGGAAACGAACGCCGATACTCTG---C---GGCGGGAGTT-ACAGAAAG 55 Query 186 TACTGACGGAGAATTTAAACGACGGAGGAGTTAAAGATCGC-GT-----TG-AGA----- 233 || ||||||||| ||| ||||||||||| | |||| |||| || || ||| Sbjct 56 TATTGACGGAGATTTTTAACGACGGAGGGGGCAAAGGTCGCGGTGAGACTGAAGATTGTT 115 Query 234 ---CCG---TGAAATCGATTGATGAGGCGATTAGAATCCTGAATCGACTGAAGATAGTAG 287 | ||||| |||||||||| |||||||||||||||| | | |||| || ||||| Sbjct 116 TTGGAGTTTTGAAAGCGATTGATGAAGCGATTAGAATCCTGACTTGTCTGAGGAAAGTAG 175 Query 288 AATCGAAGAAGCGGAAGCGGGAATCTGATAGTTCTTCGGTTGAAGTTCCGAAAGAGTTCA 347 |||||||| | || | ||||| ||||| |||| |||| |||||||| |||||||| | Sbjct 176 AATCGAAG-A----AA-CCGGAATTTGATATTTCTCCGGTGGAAGTTCCCAAAGAGTTTA 229 Query 348 -AGTGTACACTCTCGAAGACGATCATGATCGATCCTGTGATCATATTTTCTGGGCAGACG 406 | ||||||||||| || |||||||||||||| |||||||||||| |||||||||||| Sbjct 230 TA-TGTACACTCTCTAATACGATCATGATCGAGCCTGTGATCATAGCTTCTGGGCAGACT 288 Query 407 TATGAAAAGAGATATATCACAGAGTGGCTGAACCATGACCTTACATGTCCCACAGCCAAA 466 |||||||||||||||||||||||||||||||| ||||| | ||||||||||| | ||||| Sbjct 289 TATGAAAAGAGATATATCACAGAGTGGCTGAAGCATGAACGTACATGTCCCAAAACCAAA 348 Query 467 CAAGTCCTTTATCGA--GTTTGTTTGACACCCAACCATTTGATCAATGAGTTGATTACGC 524 ||| |||| | || | ||||| | || ||| |||||||||||||||||||||||||||| Sbjct 349 CAAATCCTCTCTC-ACTGTTTG-TGGATACCAAACCATTTGATCAATGAGTTGATTACGC 406 Query 525 GATGGTGTCTTGCTAACAAA-TATGATCGGCCAGCCCCAAAACCATCTGATATTGACT-A 582 |||||||| | ||||||| | |||||||| | ||||||||||||| || | | Sbjct 407 AATGGTGTCGAGTTAACAAAGT-TGATCGGC-A-----AAAACCATCTGAT---GAATTA 456 Query 583 TGTAACGGAGCTGTTCACTGATGGCATCGAATCGTTGCTTCAGCGGATTTCCTCTCCTTC 642 | || ||||||||||||| || ||||||| | ||||||||||||||||| ||| | | Sbjct 457 -GCCACTGAGCTGTTCACTGGTGACATCGAAGCATTGCTTCAGCGGATTTCATCT--T-C 512 Query 643 CTCCTCGGTTGCAGATCAGACAGAAGCTGCAAAAGAGCTAGCC-CTCCAGACCGAAAA-A 700 ||||||||| || ||||||| |||||||||||||||||| || | |||||| ||| | | Sbjct 513 CTCCTCGGTCGCGGATCAGATAGAAGCTGCAAAAGAGCT-GCGTCGCCAGAC-GAAGAGA 570 Query 701 TTTG-TCAATGTCCGTGACTTCTTTATCAA-GGAACTCCCTGATTCGATCACCAGGTTAC 758 ||| | |||||||| | ||||||| || |||| ||| ||||||||||||| | || | Sbjct 571 TTTCCT-AATGTCCGAGTCTTCTTTGTCGCTGGAA-TCCATGATTCGATCACCCGTTTGC 628 Query 759 TCACTCCGCTCTCTGTTTTGGGCGATG-AGGTAGACTCGAATCCCGAGCTTCAAGAGAAT 817 ||| ||||||||||| ||||||||| | || ||||||||||||| ||||||||||||||| Sbjct 629 TCAGTCCGCTCTCTGCTTTGGGCGAGGCAG-TAGACTCGAATCCAGAGCTTCAAGAGAAT 687 Query 818 ATCGTCACAGCGTTGTTCAACATGTCGACT-TTCGAGAAGAATAAAACAGT-ACTTGCTG 875 || ||||||| ||||||||| | |||| | || ||||| ||||||||||| | |||||| Sbjct 688 ATTATCACAGCATTGTTCAACCTCTCGATTCTT-GAGAATAATAAAACAGTGA-TTGCTG 745 Query 876 AAAACCATCAAGTGATCCCACTGCTTGCAAAGTCTATGAAGCAGGGGTCAGTTGTGACAA 935 |||||| || ||||||||| ||||| |||||||| ||||||||||| ||| || |||| Sbjct 746 AAAACCGTCTAGTGATCCCTCTGCTCACAAAGTCTTTGAAGCAGGGGACAGCTGAGACAC 805 Query 936 GAAGAAACGCTACAT-TGACTTTAGCGTCACTTTCAGACATTGATTCTAACAAGATCATC 994 ||||||||||| || | |||||| |||||||||||| |||||||||||||||||||||| Sbjct 806 GAAGAAACGCTGCAGCT-ACTTTATCGTCACTTTCAGCCATTGATTCTAACAAGATCATC 864 Query 995 ATAGGGAACTCGGTAGCACTCAAGGCTCTGATAGATCTAATCGGGGAGTTGGATGACTTA 1054 || |||| ||||| |||||||| ||||||||| ||||| |||| ||| || ||| || Sbjct 865 ATTGGGAGCTCGGAAGCACTCAGGGCTCTGATTGATCTTATCGAAGAG--GG-TGATTTG 921 Query 1055 TCAGCTACTCAT-GATGCT-CTTTG-CGCTGTTATAGACCTCTGT-TGTGATGAAAGGGA 1110 | ||| || || || || ||| || | || || |||||||| | || | | || | Sbjct 922 TTAGCCAC-CAAAGAAGCCACTTCCACGGTCTT-TA-ACCTCTGTAT-TG-T-ACTGG-A 974 Query 1111 GAACT-GGAAAAAGGCGATCTC-GTTGGGGTTGGCTCCTGCTGCAATCAAAAATATCAAA 1168 |||| |||||| |||| | || | ||| ||| |||||| |||| |||||| |||||| Sbjct 975 GAACAAGGAAAA-GGCGGTTTCAGC-GGGTTTGATTCCTGCAGCAACCAAAAAGATCAAA 1032 Query 1169 GCAAGAAGAAATTTGTTTGAATCCTTAGCTGC-CTTGGCATTGATTTCTCCACACGAAC- 1226 ||| |||| ||| || ||| | ||| || | |||||||||||||||| ||||| ||| Sbjct 1033 GCAGGAAGCAATGTGGATGAGTTGTTATCT-CTCTTGGCATTGATTTCTACACAC-AACA 1090 Query 1227 GCGTTATCCAGGAAGTGGCTAATCTAGGGGTTATCTATGATCTGTT-AAGTATCTTGAGG 1285 | | |||| | ||| ||| |||||||||| |||||||||||||||| || ||||||||| Sbjct 1091 GGGCTATCGAAGAAATGGATAATCTAGGGTTTATCTATGATCTGTTCAAA-ATCTTGAGG 1149 Query 1286 AAAACAAGTTGCATGGTGACTTGTGAGAACGCTGTAGTGATCGTAGGCAACATGTATG-C 1344 ||| | |||||| || |||| | |||||||||||||||||||| |||||||| || | Sbjct 1150 AAACCGAGTTGCTTGCTGACCGGAGAGAACGCTGTAGTGATCGTCTTCAACATGTGTGAC 1209 Query 1345 TA-AAAGCAGAGAAAGGTCTATTAA-GAAAATCCT-GGCAGAAGAGGAGAATCAACACAA 1401 | ||| |||||| ||||| | | |||| | | || ||||||||||||||||||| Sbjct 1210 -AGAAA-CAGAGACAGGTCGAG-ACTGAAAGTGGTAGG-AGAAGAGGAGAATCAACACGG 1265 Query 1402 GACATTTACAAAGATTGCAACGCAAGGATCAGTT-GTTGCGGTGATGAAA-GCACAAGGG 1459 ||||||||| ||| |||||| ||||||||||||| || ||||||| |||| ||||||||| Sbjct 1266 GACATTTACGAAGCTTGCAAAGCAAGGATCAGTTCGT-GCGGTGA-GAAAAGCACAAGGG 1323 Query 1460 ATTTTACAGTGTATTAA 1476 ||||||||||| ||||| Sbjct 1324 ATTTTACAGTGGATTAA 1340 > Ahg941356 jgi|Araly1|941356|scaffold_601900.1 Length=1434 Score = 828 bits (448), Expect = 0.0 Identities = 943/1175 (80%), Gaps = 62/1175 (5%) Strand=Plus/Plus Query 324 CGGTTGAAGTTCCGAAAGAGTTCA-AGTGTACACTCTCGAAGACGATCATGATCGATCCT 382 |||| | ||||||||||||||| | | |||| |||||||||||||||||||||||| ||| Sbjct 208 CGGTGGTAGTTCCGAAAGAGTTTATA-TGTAAACTCTCGAAGACGATCATGATCGAACCT 266 Query 383 GTGATCATAT-TTTCTGGGCAGACGTATGAAAAGAGATATATCACAGAGTGGCTGAACCA 441 |||||||| | |||||| ||||| | |||||||| | | |||||| |||||||||| || Sbjct 267 GTGATCAT-TGCTTCTGGCCAGACTTTTGAAAAGAAACACATCACAAAGTGGCTGAAGCA 325 Query 442 TGAC-CTTACATGTCCC-ACAGCCAAA-CAAGTCCTTTATCGAGTT-TGTTTGACACCCA 497 | || | |||||||||| | | ||||| | |||||| | || | || ||||||||||||| Sbjct 326 TAACAC-TACATGTCCCGA-AACCAAAGC-AGTCCTCTCTC-ACTTGTGTTTGACACCCA 381 Query 498 ACCATTTGATCAATGAGTTGATTACGCGATGGTGTCTTGCTAACAAATATGATCGGCCAG 557 |||||| |||||||||||||||||||| ||||||||| | |||||||||||||||||||| Sbjct 382 ACCATTCGATCAATGAGTTGATTACGCAATGGTGTCTCGTTAACAAATATGATCGGCCAG 441 Query 558 CCCCAAAACCATCTGATATTG-ACTATGTAACGGAGCTGTTCACTGATGGCATCGAATCG 616 |||| ||||||||| | || | || || | ||| ||||||||| || ||||||| | Sbjct 442 ACCCACAACCATCTG--A-TGAAATA-GTCATTGAGATGTTCACTGGTGACATCGAACCA 497 Query 617 TTGCTTCAGCGGATTTCCTCTCCTTCCTCCTCGGTTGCAGATCAGACAGAAGCTGCAAAA 676 |||||||| |||||||||||| | ||||||||||||||||||||| ||||||||||||| Sbjct 498 TTGCTTCACCGGATTTCCTCT-C--CCTCCTCGGTTGCAGATCAGATAGAAGCTGCAAAA 554 Query 677 GAGCTAGCCCTCCAGACCGAAAAATTTGTCAATGTCCGTGACTTCTTTATCAAGGAACTC 736 ||||| |||||||||||| ||||||||||||||| | ||||||||| ||||||||||| Sbjct 555 GAGCTTGCCCTCCAGACCTCGAAATTTGTCAATGTCTGCGACTTCTTTGTCAAGGAACTC 614 Query 737 CCTGATTCGATCACCAGGTTACTCACTCCGCTCTCT-GTTTTGGGCGATGAGGTAGACTC 795 |||||||||||| ||||| ||||||||||||||| ||| |||||||| |||||||| Sbjct 615 TATGATTCGATCACTAGGTTGCTCACTCCGCTCTCTAACTTT-GGCGATGACGTAGACTC 673 Query 796 GAATCCCGAGCTTCAAGAGAATATCGTCACAGCGTTGTTCAACATGTCGACT-TTCGAGA 854 |||||| |||||||||||||||||| ||||| | ||||| ||||| |||||| || |||| Sbjct 674 GAATCCTGAGCTTCAAGAGAATATCCTCACATCATTGTTGAACATCTCGACTGTT-GAGA 732 Query 855 AGAA-T-AAAACAGTACTTGCTGAAAA-CCATCAAGTGATCCCACTGCTTGCAAAGTCTA 911 | || | |||| | || |||||||||| || || |||||||| |||||| |||||||| Sbjct 733 A-AAGTCAAAA-AATAATTGCTGAAAATCC-TCTTGTGATCCCTCTGCTTACAAAGTCTT 789 Query 912 TGAAGCA-GGGGTCAGTTGTGACAAGAAGAAACGCTACATTGACTTTAGCGTCACTTTCA 970 || || | |||| ||| | |||| || | | || || ||||||| ||||||||||| Sbjct 790 TG-AGGAGGGGGACAGATCAAACAAAAACAGTCTCTGCAGCGACTTTAACGTCACTTTCA 848 Query 971 GACATTGATTCTAACAAGATCATCATAGGGAACTCGGTAGCACTCAAGGCTCTGATAGAT 1030 | |||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| Sbjct 849 GGCATTGATTCTAACAAGATTATCATCGGGAACTCGGAAGCACTCAAGGCTCTGATAGAT 908 Query 1031 CTAATCGGGGAGTTGGATGACTTATCAGCTACTCATGATGCTCTTTGCGCTGTTATAGAC 1090 ||||||||||| | ||||||||||||||| || ||| ||| | ||||||| || || Sbjct 909 CTAATCGGGGACTCGGATGACTTATCAGCAACAGGTGAAGCTGGCTACGCTGTTTTAAAC 968 Query 1091 CTCTGTTGTGATGAAAGGGAGAAC-TGGAAAAAGGCGATCTC-GTTGGGGTTGGCTC-CT 1147 ||||||| ||||||| ||||||| ||||||| |||||| || | ||| ||| || | Sbjct 969 CTCTGTTCTGATGAATCGGAGAACATGGAAAA-GGCGATTTCAGA-GGGTTTGATTCTC- 1025 Query 1148 GCTGCAATCAAAAATATCAAAGCAAGAAGAAATTT-GTTTGAATCCT--TAGCTGCCTTG 1204 || | | ||||||| ||| |||| |||||||| | | |||| | || || |||| Sbjct 1026 GCAGTACTCAAAAAGATCCTAGCAGGAAGAAATGTAGA--GAATA-TGGTATCTATCTTG 1082 Query 1205 GCATTGATTTCTCCACACGAACGC-G-TTATCCAGGAAGT-G-GCTAATCTAGGGGTTAT 1260 ||| ||||||| || || ||| | | ||| | || | | | || |||||| || | Sbjct 1083 ACATCGATTTCTACAAAC-AAC-CAGGTTAAGGAAAAAATAGAGG-AA-CTAGGGATTGT 1138 Query 1261 CTATGATCTGTTAA-GTATCTTGAGGAAAACAAGTTGCATGGTGACTTGTGAGAACGCTG 1319 | |||| | |||| | ||||||||||| ||||| ||| || ||||| ||||||||||| Sbjct 1139 GTGTGATATCTTAAAG-ATCTTGAGGAACACAAGCTGCTTGATGACTGGTGAGAACGCTA 1197 Query 1320 TAGTGATCGTAGGCAACATGTATGCTAAAAGCAGAGAAA-GGTCTATTAAGAAAATCCTG 1378 ||| | || | ||| |||| || | || |||||| | || ||| | ||| || Sbjct 1198 TAGAGGTCCTCTTCAAAATGTTTGATGGAATCAGAGACACGG-CTAGGCTGGGAATTCTC 1256 Query 1379 GCA-GAAGAGGAGAATCAACACAAGACATTTACAAAGATTGCAACGCAAGGATCAGTT-G 1436 || ||||||||| || | ||||||||||||| ||| |||||| ||||||||||| | | Sbjct 1257 -CAAGAAGAGGAGCTTCTATACAAGACATTTACGAAGCTTGCAAGGCAAGGATCAGATCG 1315 Query 1437 TTGCGGTGATGAAA-GCACAAGGGATTTTACAGTG 1470 | |||| || |||| ||||||| |||||||||||| Sbjct 1316 T-GCGGCGA-GAAAAGCACAAGAGATTTTACAGTG 1348 > Ahg350938 jgi|Araly1|350938|fgenesh1_pg.C_scaffold_6001531 Length=1416 Score = 697 bits (377), Expect = 0.0 Identities = 1092/1416 (77%), Gaps = 134/1416 (9%) Strand=Plus/Plus Query 113 ATGGCGGATTCGACGGCGGACGCGACGGAAACAAACGCCGATACTCTGACACTGAGGCGG 172 |||||||||||||||||||| ||| || |||||||||||||| || ||||||||| Sbjct 1 ATGGCGGATTCGACGGCGGA--CGA-GGCAACAAACGCCGATA--CT----CTGAGGCGG 51 Query 173 GAGTTGA-AGAAGGTACTGACGGAGAATTT-AAACGACGGAGGAGTTAAAGATCGCGTTG 230 || || | ||||||||||||||||| |||| |||||||||||| ||||||||| Sbjct 52 GA-TTTACAGAAGGTACTGACGGAG-ATTTGGTACGACGGAGGAGGCAAAGATCGC---- 105 Query 231 AGACCGTGAAATCGATTGATGAGGCGATTAGAATCCTGAATCGACTGAAGATAGTAGAAT 290 | ||| | |||||||||||| ||||||||||||| | | |||| || | |||||| Sbjct 106 -G---GTG--A--GATTGATGAGGCTATTAGAATCCTGACTTGTCTGAGGAAAATAGAAT 157 Query 291 CGAAGAAG-CGGAAGCGGGAATCTGATAGT-TCTTCGGTTGAAGTTCCGAAAGAGTTCA- 347 |||||||| | ||| |||||||||| | ||| |||| |||||||| |||||||| | Sbjct 158 CGAAGAAGCCAGAA----GAATCTGATA-TATCTCCGGTGGAAGTTCCAAAAGAGTTTAT 212 Query 348 AGTGTACACTCTCGAAGACGATCATGATCGATCCTGTGATCATATTTTCTGGGCAGACGT 407 | |||| ||||||||||| |||||||||||| |||||| |||| |||||| ||||| | Sbjct 213 A-TGTAAACTCTCGAAGAGGATCATGATCGAACCTGTGCTCATCGCTTCTGGCCAGACTT 271 Query 408 ATGAAAAGAGATATATCAC-AGAGTGGCTGAACCATGACCTTACATGTCCCACAGCCAAA 466 |||||||||||||||| | ||||||| |||| ||||| | |||||| |||| | ||||| Sbjct 272 TTGAAAAGAGATATATC-CTAGAGTGGTTGAAGCATGAACGTACATGCCCCAGAACCAAA 330 Query 467 CAAGTCCTTTATCGA--GTTTGTTTGACACCCAACCATTTGATCAATGA-GTTGATTACG 523 ||||| ||||| | | |||| || || ||| ||||||| |||||| || ||| |||| | Sbjct 331 CAAGTTCTTTA-CCACCGTTT-TTGGATACCAAACCATTCGATCAACGAGGTT-ATTATG 387 Query 524 CGATGGTGTCTTGCTAACAAATATGATCGGCCAGCCCCAAAACCATCTGATATTGACTAT 583 | |||||||| | |||| | ||||| | | ||||||||||||| | ||| | Sbjct 388 CAATGGTGTCGAATTCACAACTTTGATC-G---G--CCAAAACCATCTG--A-TGAAGAA 438 Query 584 GTAACGGAGCTGTTCACTGATGGCATCGAATCGTTGCTTCAGCGGATTTCCTCTCCTTCC 643 || | || |||||||||| || ||| ||||| || |||||||| ||| ||||||| | Sbjct 439 GTCATTGACCTGTTCACTGGTGACATTGAATCATTCCTTCAGCGTATTACCTCTCC-T-- 495 Query 644 TCCTCGGTTGCAGATCAGACAGAAGCTGCAAAAGAGCTAGCCCTCCAGACCGAA-AAATT 702 |||||||||| ||||||||||||||||||||||||||| |||| |||| | || | || Sbjct 496 TCCTCGGTTGAAGATCAGACAGAAGCTGCAAAAGAGCTTGCCCGCCAGGTC-AAGAGATA 554 Query 703 TGTCAATGTCCGTGACTTCTTTATCAAGGAACTCCCTGATTCGATCACCAGGTTACTCAC 762 || || |||||||||||||||| || || |||||||||||||||||||| | Sbjct 555 TGCCACTGTCCGTGACTTCTTTGTCGCCAAAATCCCTGATTCGATCACCAGG----T--- 607 Query 763 TCCGCTCTCTGTTTTGGGCGATGAGGTAGACTCGAATCCCGAGCTTCAAGAGAATATCGT 822 | |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 608 T--GCTCACTGTTTTGGGCGATGAGGTAGACTCGAATCCTGAGCTTCAAGAGAATATCAT 665 Query 823 CACAGCGTTGTTCAACATGTCGACTTTCGAGAAGAATAAAACAGTACTTGCTGAAAA-CC 881 |||| | |||||||||||||||||||| ||||||||||||||| | |||||||| || || Sbjct 666 CACATCATTGTTCAACATGTCGACTTTTGAGAAGAATAAAACACTGCTTGCTGAGAATCC 725 Query 882 ATCAAGTGATCCCACTGCTTGCAAAGTCTATGAAGCAGGGGTCAGTTGTGACAAGAAGAA 941 ||| ||||||||||||||| |||||||| ||| | ||||| ||| | |||| || || Sbjct 726 -TCATGTGATCCCACTGCTTACAAAGTCTTTGAGGAAGGGGACAGATCAAACAA-AA-AA 782 Query 942 A--CGCTACATTGACTTTAGCGT-CACTTTCAGACATTGATTCTAACAAGATCATCATAG 998 | | || || |||| | | | |||||||| | | |||||||||||||| |||||| | Sbjct 783 AGTCTCTGCAGCGACTGT-GTTTTCACTTTCACATACTGATTCTAACAAGAACATCATCG 841 Query 999 GGAACTCGGTAGCACTCAAGGCTCTGATAGATCTAATCGGGGAGTTGGATGACTT-ATCA 1057 ||||||||| ||||||||||||||||||||||||| ||| ||| || ||| || || | Sbjct 842 GGAACTCGGAAGCACTCAAGGCTCTGATAGATCTAGTCGAAGAG--GG-TGA-TTCATTA 897 Query 1058 GCTACTCA-TGATGCTCTTTGC-GCTG-TTA-TAGACCTCTGTTGT-GATGAAAGGGAGA 1112 || || || ||| || |||| | || | || || | ||||||| | | | ||||| ||| Sbjct 898 GCCAC-CAGTGAAGC-CTTTTCCGC-GCTTGCTA-ATCTCTGTT-TAG-T-AAAGG-AGA 949 Query 1113 ACTGGAAAAAGGC-GATCTC-GTTGGGGT-TGGCTCCTGCTGCAATCAAAAATATCAAAG 1169 | || ||||||| | | || | ||| | || || ||| |||| || ||| ||||||| Sbjct 950 TCAGGGAAAAGGCAGTT-TCAGC-GGG-TCTGATTCGTGCGGCAACCACAAAGATCAAAG 1006 Query 1170 CAAGAAGAAATTTGTTTGAATCCTTAGC-TGCCTTGGCATTGATTTCTCCACACGAACGC 1228 || |||| ||| || || | ||| | | | ||||||| ||||||| ||||| ||| | Sbjct 1007 CAGGAAGCAATGTGGATGTGTTGTTATCGTTC-TTGGCATCGATTTCTACACAC-AAC-C 1063 Query 1229 GT--TATCCAGGAAGTGGCTAATCTAGGGGTTATCTATGATCTGTTAAGTATCTTGAGGA 1286 | |||| | ||| ||| ||| |||||| |||| ||||||||||| ||||||||||||| Sbjct 1064 GGACTATCGAAGAAATGGATAACCTAGGGTTTATATATGATCTGTTCAGTATCTTGAGGA 1123 Query 1287 AAACAAGTTGCATGGTGACTTGT-GAGAACGCTGTAGTGATCGTAGGCAACAT--GTAT- 1342 | ||| | || | |||| | | ||||||||| || ||||| | |||| ||| Sbjct 1124 ACTCAAATAGCTTCGTGAAT-GAAGAGAACGCTTTAACCATCGTCGTTTACATTTGTAAA 1182 Query 1343 GC-TAAA-AG-CA-GAGAAA-G-G-TCTATTAAGA----A-A---A-TCCTGG-C--AGA 1383 | || | || | | || | | | || | |||| | | | | ||| | ||| Sbjct 1183 GGATACAGAGGCTTGCGAGATGTGGTCCAGGAAGAGGCGACAGGGAATG-TGGTCCTAGA 1241 Query 1384 AGAGGAGAATCAACACAAGACATTTACAAAGATTGC-AACGCAAGGATCAG-TTGTTGCG 1441 |||||||||| ||||| ||||||||| ||| |||| || ||||| | ||| |||| || Sbjct 1242 AGAGGAGAATAAACACGGGACATTTACGAAGCTTGCGAA-GCAAGAAGCAGGTTGTA-CG 1299 Query 1442 GTGATGAAA-GCACAAGGGATTTTACAGTGTATTAA 1476 |||| |||| ||||||| |||||||||||||||||| Sbjct 1300 GTGA-GAAAAGCACAAGCGATTTTACAGTGTATTAA 1334 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55497486965 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5