BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18340.1
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893755 jgi|Araly1|893755|Al_scaffold_0006_1751 1659 0.0
Ahg893752 jgi|Araly1|893752|Al_scaffold_0006_1748 959 0.0
Ahg941356 jgi|Araly1|941356|scaffold_601900.1 828 0.0
Ahg350938 jgi|Araly1|350938|fgenesh1_pg.C_scaffold_6001531 697 0.0
> Ahg893755 jgi|Araly1|893755|Al_scaffold_0006_1751
Length=1407
Score = 1659 bits (898), Expect = 0.0
Identities = 1221/1377 (89%), Gaps = 22/1377 (2%)
Strand=Plus/Plus
Query 113 ATGGCGGATTCGACGGCGGACGCGACGGAAACAAACGCCGATACTCTGACACTGAGGCGG 172
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1 ATGGCGGATTCGACGGCGGACGCGACGGAAACAAACGCAGATACTCTGAGTCTGAGGCGG 60
Query 173 GAGTTGAAGAAGGTACTGACGGAGAATTTA-A--ACGACGGAGGAGTTAAAGATCGCGTT 229
|||||||||||||||||||||||||||||| | ||||||||||||| |||||| |||||
Sbjct 61 GAGTTGAAGAAGGTACTGACGGAGAATTTATACGACGACGGAGGAGTCAAAGATGGCGTT 120
Query 230 GAGACCGTGAAATCGATTGATGAGGCGATTAGAATCCTGAATCGACTGAAGATAGTAGAA 289
||||| |||||||||||||||||||||||||||||||||||| | ||||| | || ||||
Sbjct 121 GAGACTGTGAAATCGATTGATGAGGCGATTAGAATCCTGAATTGTCTGAA-A-AG-AGAA 177
Query 290 TCGAAGAAGCGGAAGCGGGAATCTGATAGTTCTTCGGTTGAAGTTCCGAAAGAGTTCAAG 349
|||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||
Sbjct 178 TCGAAGAAGCGGAAGCGGGAATCTGATATTTCTCCGGTGGAAGTTCCGAAAGAGTTCAAG 237
Query 350 TGTACACTCTCGAAGACGATCATGATCGATCCTGTGATCATATT-TTCTGGGCAGACGTA 408
||||||||||| ||||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct 238 TGTACACTCTCCAAGACGATCATGATCGATCCTTTGATCAT-TTCTTCTGGGCAGACGTA 296
Query 409 TGAAAAGAGATATATCACAGAGTGGCTGAACCATGACCTTACATGTCCCACAGCCAAACA 468
||||||||||||||||||||| ||||| |||||| ||| ||||||||||| | ||||| |
Sbjct 297 TGAAAAGAGATATATCACAGAATGGCTCAACCATAACCGTACATGTCCCAAAACCAAAGA 356
Query 469 AGTCCTTTATCGAGTTTGTTTGACACCCAACCATTTGATCAATGAGTTGATTACGCGATG 528
| |||| | || ||| || ||||||||||||||||||||||||| |||||||||| |||
Sbjct 357 ACTCCTCTCTCAAGTCCGTATGACACCCAACCATTTGATCAATGACTTGATTACGCAATG 416
Query 529 GTGTCTTGCTAACAA-ATA--TGATCGGCCAGCCCCAAAACCATCTGATATTG-ACTA-T 583
|||||||| |||||| | | |||||||||| ||| ||||||||||| ||| | || |
Sbjct 417 GTGTCTTGTTAACAACAAAGTTGATCGGCCAAAACCACAACCATCTGATTTTGAAATAGT 476
Query 584 -GTAACGGAGCTGTTCACTGATGGCATCGAATCGTTGCTTCAGCGGATTTCCTCTCCTTC 642
||||| ||| || |||||| || ||||||| | ||||||||||||||||||||||||||
Sbjct 477 AGTAACTGAGATGGTCACTGGTGACATCGAACCATTGCTTCAGCGGATTTCCTCTCCTTC 536
Query 643 CTCCTCGGTTGCAGATCAGACAGAAGCTGCAAAAGAGCTAGCCCTCCAGACCGAAAAATT 702
|||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||
Sbjct 537 CTCCTCGGTTGCAGATCAGATGGAAGCTGCAAAAGAGCTTGCCCTCCAAACCTCGAAATT 596
Query 703 TGTCAATGTCCGTGACTTCTTTATCAAGGAACTCCCTGATTCGATCACCAGGTTACTCAC 762
|||||||||||||||||||||| || || |||||||||| ||||||||||| |||||
Sbjct 597 TGTCAATGTCCGTGACTTCTTTGTCGCCAAAATCCCTGATTCCATCACCAGGTTGCTCAC 656
Query 763 TCCGCTCTCTGTTTTGGGCGATGAGGTAGACTCGAATCCCGAGCTTCAAGAGAATATCGT 822
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 657 TCCTCTCTCTGTTTTGGGCGATGACGTAGACTCGAATCCCGAGCTTCAAGAGAATATTAT 716
Query 823 CACAGCGTTGTTCAACATGTCGACTTTCGAGAAGAATAAAACAGTACTTGCTGAAAACCA 882
|||| | |||||||||||||| ||||| ||| ||||||||||| |||||||||||||||
Sbjct 717 CACATCATTGTTCAACATGTCTACTTTTGAGCAGAATAAAACACTACTTGCTGAAAACCC 776
Query 883 TCAAGTGATCCCACTGCTTGCAAAGTCTATGAAGCAGGGGTCAGTTGTGACAAGAAGAAA 942
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 777 TCAAGTGATCCCACTGCTTGCAAAGTCTTTGAAGCAGGGGACAGTTGTGACACGAAGAAA 836
Query 943 CGCTACATTGACTTTAGCGTCACTTTCAGACATTGATTCTAACAAGATCATCATAGGGAA 1002
|||| || ||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 837 CGCTGCAGCGACTTTAATGTCACTTGCAGACATTGATTCTAACAAGATCATCATAGGGAA 896
Query 1003 CTCGGTAGCACTCAAGGCTCTGATAGATCTAATCGGGGAGTTGGATGACTTATCAGCTAC 1062
||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||| ||
Sbjct 897 CTCGGAAGCACTCAAGGCTCTGATAGATCTAATCTTGGACTCGGATGACTTATCAGCCAC 956
Query 1063 TCA-TGATGCT-CTTTGCGCTGTTATAGACCTCTGTTGTGATGAAAGGGAGAACTGGAAA 1120
|| ||| ||| || |||| || || ||||||||| ||||||| ||||||||| |||
Sbjct 957 -CAATGAAGCTGCTAA-CGCTATTTTAAACCTCTGTTTTGATGAATCGGAGAACTGCAAA 1014
Query 1121 AAGGCGATCTCGTTGGGGTTGGCTCCTGCTGCAATCAAAAATATCAAAGCAAGAAGAAAT 1180
||||| |||||||||||||||||| |||| | || |||||||||||||||| ||||||||
Sbjct 1015 AAGGCAATCTCGTTGGGGTTGGCTTCTGCCGTAACCAAAAATATCAAAGCAGGAAGAAAT 1074
Query 1181 TTGTTTGAATCCTTAGCTGCCTTGGCATTGATTTCTCCACACGAACGCGTTATCCAGGAA 1240
|| ||| | ||||||| ||||| |||||| |||||||||||||| ||| || |||||
Sbjct 1075 GTGGATGAGTTGTTAGCTGTCTTGGTATTGATCTCTCCACACGAACGTGTTGTCGAGGAA 1134
Query 1241 GTGGCTAATCTAGGGGTTATCTATGATCTGTTAAGTATCTTGAGGAAAACAAGTTGCATG 1300
||| |||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1135 ATGGATAATGTAGGGGTTATCTATGATCTGTTAAGTATCTTGAGGAAAACAAGTTCCTTG 1194
Query 1301 GTGACTTGTGAGAACGCTGTAGTGATCGTAGGCAACATGTATGCTAAAAGCAGAGAAAGG 1360
|||||||||||||||| ||||||||| || ||||||||||| ||||||||||||||||
Sbjct 1195 GTGACTTGTGAGAACGTTGTAGTGATTGTCCACAACATGTATGTTAAAAGCAGAGAAAGG 1254
Query 1361 TCTATTAAGAAAATCC-TGGCAGAAGAGGAGAATCAACACAAGACATTTACAAAGATTGC 1419
|||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1255 TCTATTTTGAAA-TCCCTGGCAGAAGAGGAGAATCAACACAAGACATTTACAAAGCTTGC 1313
Query 1420 AACGC-AAGGATCAGTTGTTGCGGTGATGAAAGCACAAGGGATTTTACAGTGTATTA 1475
|| || ||| ||||||| ||| |||| || ||||||||||||||||||| ||||||
Sbjct 1314 AA-GCCAAGAATCAGTTCTTGTGGTGGGGAGAGCACAAGGGATTTTACAGGGTATTA 1369
> Ahg893752 jgi|Araly1|893752|Al_scaffold_0006_1748
Length=1377
Score = 959 bits (519), Expect = 0.0
Identities = 1122/1397 (80%), Gaps = 106/1397 (8%)
Strand=Plus/Plus
Query 127 GGCGGACGCGACGGAAACAAACGCCGATACTCTGACACTGAGGCGGGAGTTGA-AGAAGG 185
|||||||||||||||||| ||||||||||||||| | |||||||||| | |||| |
Sbjct 3 GGCGGACGCGACGGAAACGAACGCCGATACTCTG---C---GGCGGGAGTT-ACAGAAAG 55
Query 186 TACTGACGGAGAATTTAAACGACGGAGGAGTTAAAGATCGC-GT-----TG-AGA----- 233
|| ||||||||| ||| ||||||||||| | |||| |||| || || |||
Sbjct 56 TATTGACGGAGATTTTTAACGACGGAGGGGGCAAAGGTCGCGGTGAGACTGAAGATTGTT 115
Query 234 ---CCG---TGAAATCGATTGATGAGGCGATTAGAATCCTGAATCGACTGAAGATAGTAG 287
| ||||| |||||||||| |||||||||||||||| | | |||| || |||||
Sbjct 116 TTGGAGTTTTGAAAGCGATTGATGAAGCGATTAGAATCCTGACTTGTCTGAGGAAAGTAG 175
Query 288 AATCGAAGAAGCGGAAGCGGGAATCTGATAGTTCTTCGGTTGAAGTTCCGAAAGAGTTCA 347
|||||||| | || | ||||| ||||| |||| |||| |||||||| |||||||| |
Sbjct 176 AATCGAAG-A----AA-CCGGAATTTGATATTTCTCCGGTGGAAGTTCCCAAAGAGTTTA 229
Query 348 -AGTGTACACTCTCGAAGACGATCATGATCGATCCTGTGATCATATTTTCTGGGCAGACG 406
| ||||||||||| || |||||||||||||| |||||||||||| ||||||||||||
Sbjct 230 TA-TGTACACTCTCTAATACGATCATGATCGAGCCTGTGATCATAGCTTCTGGGCAGACT 288
Query 407 TATGAAAAGAGATATATCACAGAGTGGCTGAACCATGACCTTACATGTCCCACAGCCAAA 466
|||||||||||||||||||||||||||||||| ||||| | ||||||||||| | |||||
Sbjct 289 TATGAAAAGAGATATATCACAGAGTGGCTGAAGCATGAACGTACATGTCCCAAAACCAAA 348
Query 467 CAAGTCCTTTATCGA--GTTTGTTTGACACCCAACCATTTGATCAATGAGTTGATTACGC 524
||| |||| | || | ||||| | || ||| ||||||||||||||||||||||||||||
Sbjct 349 CAAATCCTCTCTC-ACTGTTTG-TGGATACCAAACCATTTGATCAATGAGTTGATTACGC 406
Query 525 GATGGTGTCTTGCTAACAAA-TATGATCGGCCAGCCCCAAAACCATCTGATATTGACT-A 582
|||||||| | ||||||| | |||||||| | ||||||||||||| || | |
Sbjct 407 AATGGTGTCGAGTTAACAAAGT-TGATCGGC-A-----AAAACCATCTGAT---GAATTA 456
Query 583 TGTAACGGAGCTGTTCACTGATGGCATCGAATCGTTGCTTCAGCGGATTTCCTCTCCTTC 642
| || ||||||||||||| || ||||||| | ||||||||||||||||| ||| | |
Sbjct 457 -GCCACTGAGCTGTTCACTGGTGACATCGAAGCATTGCTTCAGCGGATTTCATCT--T-C 512
Query 643 CTCCTCGGTTGCAGATCAGACAGAAGCTGCAAAAGAGCTAGCC-CTCCAGACCGAAAA-A 700
||||||||| || ||||||| |||||||||||||||||| || | |||||| ||| | |
Sbjct 513 CTCCTCGGTCGCGGATCAGATAGAAGCTGCAAAAGAGCT-GCGTCGCCAGAC-GAAGAGA 570
Query 701 TTTG-TCAATGTCCGTGACTTCTTTATCAA-GGAACTCCCTGATTCGATCACCAGGTTAC 758
||| | |||||||| | ||||||| || |||| ||| ||||||||||||| | || |
Sbjct 571 TTTCCT-AATGTCCGAGTCTTCTTTGTCGCTGGAA-TCCATGATTCGATCACCCGTTTGC 628
Query 759 TCACTCCGCTCTCTGTTTTGGGCGATG-AGGTAGACTCGAATCCCGAGCTTCAAGAGAAT 817
||| ||||||||||| ||||||||| | || ||||||||||||| |||||||||||||||
Sbjct 629 TCAGTCCGCTCTCTGCTTTGGGCGAGGCAG-TAGACTCGAATCCAGAGCTTCAAGAGAAT 687
Query 818 ATCGTCACAGCGTTGTTCAACATGTCGACT-TTCGAGAAGAATAAAACAGT-ACTTGCTG 875
|| ||||||| ||||||||| | |||| | || ||||| ||||||||||| | ||||||
Sbjct 688 ATTATCACAGCATTGTTCAACCTCTCGATTCTT-GAGAATAATAAAACAGTGA-TTGCTG 745
Query 876 AAAACCATCAAGTGATCCCACTGCTTGCAAAGTCTATGAAGCAGGGGTCAGTTGTGACAA 935
|||||| || ||||||||| ||||| |||||||| ||||||||||| ||| || ||||
Sbjct 746 AAAACCGTCTAGTGATCCCTCTGCTCACAAAGTCTTTGAAGCAGGGGACAGCTGAGACAC 805
Query 936 GAAGAAACGCTACAT-TGACTTTAGCGTCACTTTCAGACATTGATTCTAACAAGATCATC 994
||||||||||| || | |||||| |||||||||||| ||||||||||||||||||||||
Sbjct 806 GAAGAAACGCTGCAGCT-ACTTTATCGTCACTTTCAGCCATTGATTCTAACAAGATCATC 864
Query 995 ATAGGGAACTCGGTAGCACTCAAGGCTCTGATAGATCTAATCGGGGAGTTGGATGACTTA 1054
|| |||| ||||| |||||||| ||||||||| ||||| |||| ||| || ||| ||
Sbjct 865 ATTGGGAGCTCGGAAGCACTCAGGGCTCTGATTGATCTTATCGAAGAG--GG-TGATTTG 921
Query 1055 TCAGCTACTCAT-GATGCT-CTTTG-CGCTGTTATAGACCTCTGT-TGTGATGAAAGGGA 1110
| ||| || || || || ||| || | || || |||||||| | || | | || |
Sbjct 922 TTAGCCAC-CAAAGAAGCCACTTCCACGGTCTT-TA-ACCTCTGTAT-TG-T-ACTGG-A 974
Query 1111 GAACT-GGAAAAAGGCGATCTC-GTTGGGGTTGGCTCCTGCTGCAATCAAAAATATCAAA 1168
|||| |||||| |||| | || | ||| ||| |||||| |||| |||||| ||||||
Sbjct 975 GAACAAGGAAAA-GGCGGTTTCAGC-GGGTTTGATTCCTGCAGCAACCAAAAAGATCAAA 1032
Query 1169 GCAAGAAGAAATTTGTTTGAATCCTTAGCTGC-CTTGGCATTGATTTCTCCACACGAAC- 1226
||| |||| ||| || ||| | ||| || | |||||||||||||||| ||||| |||
Sbjct 1033 GCAGGAAGCAATGTGGATGAGTTGTTATCT-CTCTTGGCATTGATTTCTACACAC-AACA 1090
Query 1227 GCGTTATCCAGGAAGTGGCTAATCTAGGGGTTATCTATGATCTGTT-AAGTATCTTGAGG 1285
| | |||| | ||| ||| |||||||||| |||||||||||||||| || |||||||||
Sbjct 1091 GGGCTATCGAAGAAATGGATAATCTAGGGTTTATCTATGATCTGTTCAAA-ATCTTGAGG 1149
Query 1286 AAAACAAGTTGCATGGTGACTTGTGAGAACGCTGTAGTGATCGTAGGCAACATGTATG-C 1344
||| | |||||| || |||| | |||||||||||||||||||| |||||||| || |
Sbjct 1150 AAACCGAGTTGCTTGCTGACCGGAGAGAACGCTGTAGTGATCGTCTTCAACATGTGTGAC 1209
Query 1345 TA-AAAGCAGAGAAAGGTCTATTAA-GAAAATCCT-GGCAGAAGAGGAGAATCAACACAA 1401
| ||| |||||| ||||| | | |||| | | || |||||||||||||||||||
Sbjct 1210 -AGAAA-CAGAGACAGGTCGAG-ACTGAAAGTGGTAGG-AGAAGAGGAGAATCAACACGG 1265
Query 1402 GACATTTACAAAGATTGCAACGCAAGGATCAGTT-GTTGCGGTGATGAAA-GCACAAGGG 1459
||||||||| ||| |||||| ||||||||||||| || ||||||| |||| |||||||||
Sbjct 1266 GACATTTACGAAGCTTGCAAAGCAAGGATCAGTTCGT-GCGGTGA-GAAAAGCACAAGGG 1323
Query 1460 ATTTTACAGTGTATTAA 1476
||||||||||| |||||
Sbjct 1324 ATTTTACAGTGGATTAA 1340
> Ahg941356 jgi|Araly1|941356|scaffold_601900.1
Length=1434
Score = 828 bits (448), Expect = 0.0
Identities = 943/1175 (80%), Gaps = 62/1175 (5%)
Strand=Plus/Plus
Query 324 CGGTTGAAGTTCCGAAAGAGTTCA-AGTGTACACTCTCGAAGACGATCATGATCGATCCT 382
|||| | ||||||||||||||| | | |||| |||||||||||||||||||||||| |||
Sbjct 208 CGGTGGTAGTTCCGAAAGAGTTTATA-TGTAAACTCTCGAAGACGATCATGATCGAACCT 266
Query 383 GTGATCATAT-TTTCTGGGCAGACGTATGAAAAGAGATATATCACAGAGTGGCTGAACCA 441
|||||||| | |||||| ||||| | |||||||| | | |||||| |||||||||| ||
Sbjct 267 GTGATCAT-TGCTTCTGGCCAGACTTTTGAAAAGAAACACATCACAAAGTGGCTGAAGCA 325
Query 442 TGAC-CTTACATGTCCC-ACAGCCAAA-CAAGTCCTTTATCGAGTT-TGTTTGACACCCA 497
| || | |||||||||| | | ||||| | |||||| | || | || |||||||||||||
Sbjct 326 TAACAC-TACATGTCCCGA-AACCAAAGC-AGTCCTCTCTC-ACTTGTGTTTGACACCCA 381
Query 498 ACCATTTGATCAATGAGTTGATTACGCGATGGTGTCTTGCTAACAAATATGATCGGCCAG 557
|||||| |||||||||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct 382 ACCATTCGATCAATGAGTTGATTACGCAATGGTGTCTCGTTAACAAATATGATCGGCCAG 441
Query 558 CCCCAAAACCATCTGATATTG-ACTATGTAACGGAGCTGTTCACTGATGGCATCGAATCG 616
|||| ||||||||| | || | || || | ||| ||||||||| || ||||||| |
Sbjct 442 ACCCACAACCATCTG--A-TGAAATA-GTCATTGAGATGTTCACTGGTGACATCGAACCA 497
Query 617 TTGCTTCAGCGGATTTCCTCTCCTTCCTCCTCGGTTGCAGATCAGACAGAAGCTGCAAAA 676
|||||||| |||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 498 TTGCTTCACCGGATTTCCTCT-C--CCTCCTCGGTTGCAGATCAGATAGAAGCTGCAAAA 554
Query 677 GAGCTAGCCCTCCAGACCGAAAAATTTGTCAATGTCCGTGACTTCTTTATCAAGGAACTC 736
||||| |||||||||||| ||||||||||||||| | ||||||||| |||||||||||
Sbjct 555 GAGCTTGCCCTCCAGACCTCGAAATTTGTCAATGTCTGCGACTTCTTTGTCAAGGAACTC 614
Query 737 CCTGATTCGATCACCAGGTTACTCACTCCGCTCTCT-GTTTTGGGCGATGAGGTAGACTC 795
|||||||||||| ||||| ||||||||||||||| ||| |||||||| ||||||||
Sbjct 615 TATGATTCGATCACTAGGTTGCTCACTCCGCTCTCTAACTTT-GGCGATGACGTAGACTC 673
Query 796 GAATCCCGAGCTTCAAGAGAATATCGTCACAGCGTTGTTCAACATGTCGACT-TTCGAGA 854
|||||| |||||||||||||||||| ||||| | ||||| ||||| |||||| || ||||
Sbjct 674 GAATCCTGAGCTTCAAGAGAATATCCTCACATCATTGTTGAACATCTCGACTGTT-GAGA 732
Query 855 AGAA-T-AAAACAGTACTTGCTGAAAA-CCATCAAGTGATCCCACTGCTTGCAAAGTCTA 911
| || | |||| | || |||||||||| || || |||||||| |||||| ||||||||
Sbjct 733 A-AAGTCAAAA-AATAATTGCTGAAAATCC-TCTTGTGATCCCTCTGCTTACAAAGTCTT 789
Query 912 TGAAGCA-GGGGTCAGTTGTGACAAGAAGAAACGCTACATTGACTTTAGCGTCACTTTCA 970
|| || | |||| ||| | |||| || | | || || ||||||| |||||||||||
Sbjct 790 TG-AGGAGGGGGACAGATCAAACAAAAACAGTCTCTGCAGCGACTTTAACGTCACTTTCA 848
Query 971 GACATTGATTCTAACAAGATCATCATAGGGAACTCGGTAGCACTCAAGGCTCTGATAGAT 1030
| |||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||
Sbjct 849 GGCATTGATTCTAACAAGATTATCATCGGGAACTCGGAAGCACTCAAGGCTCTGATAGAT 908
Query 1031 CTAATCGGGGAGTTGGATGACTTATCAGCTACTCATGATGCTCTTTGCGCTGTTATAGAC 1090
||||||||||| | ||||||||||||||| || ||| ||| | ||||||| || ||
Sbjct 909 CTAATCGGGGACTCGGATGACTTATCAGCAACAGGTGAAGCTGGCTACGCTGTTTTAAAC 968
Query 1091 CTCTGTTGTGATGAAAGGGAGAAC-TGGAAAAAGGCGATCTC-GTTGGGGTTGGCTC-CT 1147
||||||| ||||||| ||||||| ||||||| |||||| || | ||| ||| || |
Sbjct 969 CTCTGTTCTGATGAATCGGAGAACATGGAAAA-GGCGATTTCAGA-GGGTTTGATTCTC- 1025
Query 1148 GCTGCAATCAAAAATATCAAAGCAAGAAGAAATTT-GTTTGAATCCT--TAGCTGCCTTG 1204
|| | | ||||||| ||| |||| |||||||| | | |||| | || || ||||
Sbjct 1026 GCAGTACTCAAAAAGATCCTAGCAGGAAGAAATGTAGA--GAATA-TGGTATCTATCTTG 1082
Query 1205 GCATTGATTTCTCCACACGAACGC-G-TTATCCAGGAAGT-G-GCTAATCTAGGGGTTAT 1260
||| ||||||| || || ||| | | ||| | || | | | || |||||| || |
Sbjct 1083 ACATCGATTTCTACAAAC-AAC-CAGGTTAAGGAAAAAATAGAGG-AA-CTAGGGATTGT 1138
Query 1261 CTATGATCTGTTAA-GTATCTTGAGGAAAACAAGTTGCATGGTGACTTGTGAGAACGCTG 1319
| |||| | |||| | ||||||||||| ||||| ||| || ||||| |||||||||||
Sbjct 1139 GTGTGATATCTTAAAG-ATCTTGAGGAACACAAGCTGCTTGATGACTGGTGAGAACGCTA 1197
Query 1320 TAGTGATCGTAGGCAACATGTATGCTAAAAGCAGAGAAA-GGTCTATTAAGAAAATCCTG 1378
||| | || | ||| |||| || | || |||||| | || ||| | ||| ||
Sbjct 1198 TAGAGGTCCTCTTCAAAATGTTTGATGGAATCAGAGACACGG-CTAGGCTGGGAATTCTC 1256
Query 1379 GCA-GAAGAGGAGAATCAACACAAGACATTTACAAAGATTGCAACGCAAGGATCAGTT-G 1436
|| ||||||||| || | ||||||||||||| ||| |||||| ||||||||||| | |
Sbjct 1257 -CAAGAAGAGGAGCTTCTATACAAGACATTTACGAAGCTTGCAAGGCAAGGATCAGATCG 1315
Query 1437 TTGCGGTGATGAAA-GCACAAGGGATTTTACAGTG 1470
| |||| || |||| ||||||| ||||||||||||
Sbjct 1316 T-GCGGCGA-GAAAAGCACAAGAGATTTTACAGTG 1348
> Ahg350938 jgi|Araly1|350938|fgenesh1_pg.C_scaffold_6001531
Length=1416
Score = 697 bits (377), Expect = 0.0
Identities = 1092/1416 (77%), Gaps = 134/1416 (9%)
Strand=Plus/Plus
Query 113 ATGGCGGATTCGACGGCGGACGCGACGGAAACAAACGCCGATACTCTGACACTGAGGCGG 172
|||||||||||||||||||| ||| || |||||||||||||| || |||||||||
Sbjct 1 ATGGCGGATTCGACGGCGGA--CGA-GGCAACAAACGCCGATA--CT----CTGAGGCGG 51
Query 173 GAGTTGA-AGAAGGTACTGACGGAGAATTT-AAACGACGGAGGAGTTAAAGATCGCGTTG 230
|| || | ||||||||||||||||| |||| |||||||||||| |||||||||
Sbjct 52 GA-TTTACAGAAGGTACTGACGGAG-ATTTGGTACGACGGAGGAGGCAAAGATCGC---- 105
Query 231 AGACCGTGAAATCGATTGATGAGGCGATTAGAATCCTGAATCGACTGAAGATAGTAGAAT 290
| ||| | |||||||||||| ||||||||||||| | | |||| || | ||||||
Sbjct 106 -G---GTG--A--GATTGATGAGGCTATTAGAATCCTGACTTGTCTGAGGAAAATAGAAT 157
Query 291 CGAAGAAG-CGGAAGCGGGAATCTGATAGT-TCTTCGGTTGAAGTTCCGAAAGAGTTCA- 347
|||||||| | ||| |||||||||| | ||| |||| |||||||| |||||||| |
Sbjct 158 CGAAGAAGCCAGAA----GAATCTGATA-TATCTCCGGTGGAAGTTCCAAAAGAGTTTAT 212
Query 348 AGTGTACACTCTCGAAGACGATCATGATCGATCCTGTGATCATATTTTCTGGGCAGACGT 407
| |||| ||||||||||| |||||||||||| |||||| |||| |||||| ||||| |
Sbjct 213 A-TGTAAACTCTCGAAGAGGATCATGATCGAACCTGTGCTCATCGCTTCTGGCCAGACTT 271
Query 408 ATGAAAAGAGATATATCAC-AGAGTGGCTGAACCATGACCTTACATGTCCCACAGCCAAA 466
|||||||||||||||| | ||||||| |||| ||||| | |||||| |||| | |||||
Sbjct 272 TTGAAAAGAGATATATC-CTAGAGTGGTTGAAGCATGAACGTACATGCCCCAGAACCAAA 330
Query 467 CAAGTCCTTTATCGA--GTTTGTTTGACACCCAACCATTTGATCAATGA-GTTGATTACG 523
||||| ||||| | | |||| || || ||| ||||||| |||||| || ||| |||| |
Sbjct 331 CAAGTTCTTTA-CCACCGTTT-TTGGATACCAAACCATTCGATCAACGAGGTT-ATTATG 387
Query 524 CGATGGTGTCTTGCTAACAAATATGATCGGCCAGCCCCAAAACCATCTGATATTGACTAT 583
| |||||||| | |||| | ||||| | | ||||||||||||| | ||| |
Sbjct 388 CAATGGTGTCGAATTCACAACTTTGATC-G---G--CCAAAACCATCTG--A-TGAAGAA 438
Query 584 GTAACGGAGCTGTTCACTGATGGCATCGAATCGTTGCTTCAGCGGATTTCCTCTCCTTCC 643
|| | || |||||||||| || ||| ||||| || |||||||| ||| ||||||| |
Sbjct 439 GTCATTGACCTGTTCACTGGTGACATTGAATCATTCCTTCAGCGTATTACCTCTCC-T-- 495
Query 644 TCCTCGGTTGCAGATCAGACAGAAGCTGCAAAAGAGCTAGCCCTCCAGACCGAA-AAATT 702
|||||||||| ||||||||||||||||||||||||||| |||| |||| | || | ||
Sbjct 496 TCCTCGGTTGAAGATCAGACAGAAGCTGCAAAAGAGCTTGCCCGCCAGGTC-AAGAGATA 554
Query 703 TGTCAATGTCCGTGACTTCTTTATCAAGGAACTCCCTGATTCGATCACCAGGTTACTCAC 762
|| || |||||||||||||||| || || |||||||||||||||||||| |
Sbjct 555 TGCCACTGTCCGTGACTTCTTTGTCGCCAAAATCCCTGATTCGATCACCAGG----T--- 607
Query 763 TCCGCTCTCTGTTTTGGGCGATGAGGTAGACTCGAATCCCGAGCTTCAAGAGAATATCGT 822
| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 608 T--GCTCACTGTTTTGGGCGATGAGGTAGACTCGAATCCTGAGCTTCAAGAGAATATCAT 665
Query 823 CACAGCGTTGTTCAACATGTCGACTTTCGAGAAGAATAAAACAGTACTTGCTGAAAA-CC 881
|||| | |||||||||||||||||||| ||||||||||||||| | |||||||| || ||
Sbjct 666 CACATCATTGTTCAACATGTCGACTTTTGAGAAGAATAAAACACTGCTTGCTGAGAATCC 725
Query 882 ATCAAGTGATCCCACTGCTTGCAAAGTCTATGAAGCAGGGGTCAGTTGTGACAAGAAGAA 941
||| ||||||||||||||| |||||||| ||| | ||||| ||| | |||| || ||
Sbjct 726 -TCATGTGATCCCACTGCTTACAAAGTCTTTGAGGAAGGGGACAGATCAAACAA-AA-AA 782
Query 942 A--CGCTACATTGACTTTAGCGT-CACTTTCAGACATTGATTCTAACAAGATCATCATAG 998
| | || || |||| | | | |||||||| | | |||||||||||||| |||||| |
Sbjct 783 AGTCTCTGCAGCGACTGT-GTTTTCACTTTCACATACTGATTCTAACAAGAACATCATCG 841
Query 999 GGAACTCGGTAGCACTCAAGGCTCTGATAGATCTAATCGGGGAGTTGGATGACTT-ATCA 1057
||||||||| ||||||||||||||||||||||||| ||| ||| || ||| || || |
Sbjct 842 GGAACTCGGAAGCACTCAAGGCTCTGATAGATCTAGTCGAAGAG--GG-TGA-TTCATTA 897
Query 1058 GCTACTCA-TGATGCTCTTTGC-GCTG-TTA-TAGACCTCTGTTGT-GATGAAAGGGAGA 1112
|| || || ||| || |||| | || | || || | ||||||| | | | ||||| |||
Sbjct 898 GCCAC-CAGTGAAGC-CTTTTCCGC-GCTTGCTA-ATCTCTGTT-TAG-T-AAAGG-AGA 949
Query 1113 ACTGGAAAAAGGC-GATCTC-GTTGGGGT-TGGCTCCTGCTGCAATCAAAAATATCAAAG 1169
| || ||||||| | | || | ||| | || || ||| |||| || ||| |||||||
Sbjct 950 TCAGGGAAAAGGCAGTT-TCAGC-GGG-TCTGATTCGTGCGGCAACCACAAAGATCAAAG 1006
Query 1170 CAAGAAGAAATTTGTTTGAATCCTTAGC-TGCCTTGGCATTGATTTCTCCACACGAACGC 1228
|| |||| ||| || || | ||| | | | ||||||| ||||||| ||||| ||| |
Sbjct 1007 CAGGAAGCAATGTGGATGTGTTGTTATCGTTC-TTGGCATCGATTTCTACACAC-AAC-C 1063
Query 1229 GT--TATCCAGGAAGTGGCTAATCTAGGGGTTATCTATGATCTGTTAAGTATCTTGAGGA 1286
| |||| | ||| ||| ||| |||||| |||| ||||||||||| |||||||||||||
Sbjct 1064 GGACTATCGAAGAAATGGATAACCTAGGGTTTATATATGATCTGTTCAGTATCTTGAGGA 1123
Query 1287 AAACAAGTTGCATGGTGACTTGT-GAGAACGCTGTAGTGATCGTAGGCAACAT--GTAT- 1342
| ||| | || | |||| | | ||||||||| || ||||| | |||| |||
Sbjct 1124 ACTCAAATAGCTTCGTGAAT-GAAGAGAACGCTTTAACCATCGTCGTTTACATTTGTAAA 1182
Query 1343 GC-TAAA-AG-CA-GAGAAA-G-G-TCTATTAAGA----A-A---A-TCCTGG-C--AGA 1383
| || | || | | || | | | || | |||| | | | | ||| | |||
Sbjct 1183 GGATACAGAGGCTTGCGAGATGTGGTCCAGGAAGAGGCGACAGGGAATG-TGGTCCTAGA 1241
Query 1384 AGAGGAGAATCAACACAAGACATTTACAAAGATTGC-AACGCAAGGATCAG-TTGTTGCG 1441
|||||||||| ||||| ||||||||| ||| |||| || ||||| | ||| |||| ||
Sbjct 1242 AGAGGAGAATAAACACGGGACATTTACGAAGCTTGCGAA-GCAAGAAGCAGGTTGTA-CG 1299
Query 1442 GTGATGAAA-GCACAAGGGATTTTACAGTGTATTAA 1476
|||| |||| ||||||| ||||||||||||||||||
Sbjct 1300 GTGA-GAAAAGCACAAGCGATTTTACAGTGTATTAA 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55497486965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5