BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18360.1
Length=2703
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893757 jgi|Araly1|893757|Al_scaffold_0006_1753 3133 0.0
> Ahg893757 jgi|Araly1|893757|Al_scaffold_0006_1753
Length=2706
Score = 3133 bits (1696), Expect = 0.0
Identities = 2393/2726 (88%), Gaps = 61/2726 (2%)
Strand=Plus/Plus
Query 10 TCTTCATCTTTGTCATTGCAGTCTTGCAATTGGAGACACCATGTGTTTCCAAGCTTCAGC 69
|||||||| || ||||||||| ||||| ||||||||||||||||||| ||||||||||||
Sbjct 10 TCTTCATCGTTCTCATTGCAGCCTTGCCATTGGAGACACCATGTGTTCCCAAGCTTCAGC 69
Query 70 GGCAAAGATGTCCGCAGAACCTTTCTCAGCCACCTTCTCAAGGAGTTCCGGCGT-AAGGG 128
||| |||| ||||| |||||||||||||| |||||||| ||| | |||| || | |||||
Sbjct 70 GGCGAAGACGTCCGTAGAACCTTTCTCAGTCACCTTCTGAAGAAATTCCAGC-TAAAGGG 128
Query 129 AATCCGTACTTTCATAGATAATGATATCAAGAGAAGCCAAATGATCAGTTCTGAGCTTGT 188
||| || |||||||| |||||||||||| ||||| ||||||||||| || | ||||| |
Sbjct 129 AATTCGCACTTTCATGGATAATGATATCGAGAGAGGCCAAATGATCGGTCCAGAGCTCAT 188
Query 189 ACGAGCTATCAGAGAATCTAGGATTGCGGTTGTAGTGTTGTCGCGGACCTATGCATCTTC 248
|| ||| ||| ||||||||||| ||||||||||||| |||||| ||| |||||||||||
Sbjct 189 ACAAGCAATCCGAGAATCTAGGTTTGCGGTTGTAGTATTGTCGAAGACATATGCATCTTC 248
Query 249 -AAGCTGGTGTTTGAATGAGTTGGTGGAGATAAAGAAAG-TAAGCCAGATGATCATGCCG 306
||| ||||||||| ||||||||||||| |||||| ||| | ||| ||| | |||| ||
Sbjct 249 AAAG-TGGTGTTTGGATGAGTTGGTGGAAATAAAGGAAGCT-AGCAAGAAGGTCATTCCA 306
Query 307 GTTTTCTACGAGGTGGATCCATCTGATGTGAGGAA-ACGAACGGGAGAATTTGGAAAGGC 365
|||||||| | ||||| |||||||| |||| ||| | | ||||||||||||||| |
Sbjct 307 ATTTTCTACAATGTGGAGCCATCTGACGTGAAGAATA-TAGGGGGAGAATTTGGAAATGA 365
Query 366 GTTTGAGGAAGCATGTGAAAG-ACAACCAGATGAGGAAGTGAAGCAGAAATGGAGAGAAG 424
||||||| |||||||| |||| | ||||||| || || || | | | |||||||||||
Sbjct 366 GTTTGAGAAAGCATGT-AAAGAAAAACCAGA-GA--AATTG--G-ATAGATGGAGAGAAG 418
Query 425 CATTGGTCTATATAGCTAATATAGCCGGCGAGTCTTCTCAAAACTGGGACAATGAAGCAG 484
| ||||||||| | ||| ||||||||||||||| |||||||||||||| || ||||||||
Sbjct 419 CCTTGGTCTATGTGGCTGATATAGCCGGCGAGTGTTCTCAAAACTGGGTCAGTGAAGCAG 478
Query 485 ATCTGATTGACAAGATTGCTATGAGCATTTCATATG-AATTGAATTCTACATTATCACGA 543
|| ||||||| || |||||||||||||||||| | | |||||||||||||| |||||||
Sbjct 479 ATATGATTGAAAATATTGCTATGAGCATTTCAGA-GAAATTGAATTCTACACCATCACGA 537
Query 544 GATTCCTACAATCTGGTTGGAATCGACAATCATATGAGAGAGCTGGATTCTTTGTTATGT 603
|||||| | |||||||||||||||||| ||||||||||||| |||||||| |||||| |
Sbjct 538 GATTCCGAAAATCTGGTTGGAATCGACGCTCATATGAGAGAGATGGATTCTCTGTTATTT 597
Query 604 CTGGAATCAACTGAAGTGAAA-ATGGTGGGGATTTGGGGTCCTGCAGGTATTGGCAAGAC 662
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTGGAATCAACTGAAGT-AAAGATGGTGGGGATTTGGGGTCCTGCAGGTATTGGCAAGAC 656
Query 663 AACAATTGCCAGAGCTTTATTCAACCGGCTATCTGAAAACTTCCAACACACTATTTTTAT 722
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 657 AACAATTGCCAGAGCTCTATTCAACCGGCTCTCTGAAAACTTCCAACACACTATTTTTAT 716
Query 723 GGAGAATGTTAAGGGAAGTTCTAGGACCTCGGAGCTCGATGCCTATGGCTTCCAGTTGCG 782
|||||||||||||||||||| ||||| |||| ||||||| ||||||| | |||||||
Sbjct 717 GGAGAATGTTAAGGGAAGTTATAGGAGAACGGATCTCGATGACTATGGCATGAAGTTGCG 776
Query 783 TTTGCAAGAACAGTTTCTGTCTGAAGTTATTGATCATAAGCATATGAAGATACATGATTT 842
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 777 TTTGCAAGAACAGTTTCTGTCTGAAGTTATAGATCATAAGCATATGAAGATACATGATTT 836
Query 843 AGGTTTGGTAAAAGAAAGATTGCAGGATCTGAAAGTTCTTGTTGTTCTTGATGATGTTGA 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AGGTTTGGTAAAAGAAAGATTGCAGGATCTGAAAGTTCTTGTTGTTCTTGATGATGTTGA 896
Query 903 TAAACTAGAACAACTTGATGCCTTAGTGAAACAATCTCAGTGGTTTGGTTCTGGAAGTAG 962
|||| |||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 897 TAAAATAGAGCAACTTGATGCTTTGGTGAAACAATCTCAGTGGTTTGGTTCTGGAAGTAG 956
Query 963 GATCATTGTGACCACGGAAAACAAACAGCTATTGAGAGCGCATGGGATCA--CTTGCATA 1020
||||| ||||||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 957 AATCATCGTGACCACGGAAAACAAACAGCTTTTGAGAGCGCATGGGATCAAGCT--CATA 1014
Query 1021 TATGA-GTTGGGTTTTCCATCTAGAAGTGATTCTCTTCAGATTTTCTGCCAATATGCATT 1079
||||| ||||| ||||||||||||| |||| ||||||||||||||||||| || |||||
Sbjct 1015 TATGAAGTTGG-TTTTCCATCTAGAGGTGAATCTCTTCAGATTTTCTGCCTATCCGCATT 1073
Query 1080 TGGAGAGAGTTCTGCACCAGATGGTTGTATCGAGCTTGCTACTGAAATAACAAAGCTTGC 1139
|||| | || ||||||||| |||||| |||| |||| |||||||||||||||||||||||
Sbjct 1074 TGGACAAAGCTCTGCACCACATGGTTTTATCAAGCTCGCTACTGAAATAACAAAGCTTGC 1133
Query 1140 TGGCTATCTTCCCCTAGCTCTAAAGGTTTTGGGGTCCTCTCTGCGAGGGATGAGCAAAGA 1199
|||||||||||| ||||| || | |||||||||||| |||||||||||||||| ||||||
Sbjct 1134 TGGCTATCTTCCTCTAGCGCTGACGGTTTTGGGGTCATCTCTGCGAGGGATGAACAAAGA 1193
Query 1200 TGAGCAAAAATCAGCATTGCCTCGACTCAGAACCAGTCTTAATGAGGATATTA-GAAATG 1258
||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||
Sbjct 1194 TGAGCAAAAATCAGCATTGCCTCGACTCAGAACCAGTCTCAATGAGGATATAAAGAA-TG 1252
Query 1259 TTTTACGAGTCGGTTATGATGGTATACATGACAAGGATAAGGTC-ATATTCCTTCATATT 1317
||||||||||| |||||||| || ||||||| | ||||||| || ||||||||||| |||
Sbjct 1253 TTTTACGAGTCAGTTATGATAGTTTACATGAGAGGGATAAG-TCTATATTCCTTCACATT 1311
Query 1318 GCTTGTTTATTCAATGGTGAGAACGTTGATTATGTGAAGCAAATACTTGCAAGTTCTGGC 1377
|| |||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||
Sbjct 1312 GCGTGTTTATTTAATGGTGAGAATGTTGATTATGTGAAGCAGTTGCTTGCAAGTTCTGGC 1371
Query 1378 TTGGATGTCA-CATTTGGGCTTCAAGTCCTTACCAGTAGGTCTCTCATACACATATCGAG 1436
|||||||| | | ||||| ||| ||||||| |||| ||| ||||||||| |||||||| |
Sbjct 1372 TTGGATGTAAAC-TTTGGACTTGAAGTCCTGACCAATAGATCTCTCATAAACATATCGGG 1430
Query 1437 ATGCAATCGTACTATTACGATGCACAATTTGCTAGAACAATTGGGTCGAGAAATTGTTTG 1496
|| |||||| || |||| |||||||| ||| || |||||||||||||||||| ||||||
Sbjct 1431 ATTCAATCGCACCATTATGATGCACACTTTACTCGAACAATTGGGTCGAGAAGTTGTTTA 1490
Query 1497 CGAACAATCTATTGCCGAGCCTGGCAAACGTCAATTCTTGATGGATGCTTCAGAGATTTA 1556
||||||| ||||| ||||||| | ||||||||||||||| ||||||||||||| || |
Sbjct 1491 TGAACAATTTATTGTCGAGCCTAGAAAACGTCAATTCTTGGTGGATGCTTCAGATATCTG 1550
Query 1557 TGATGTACTTGCTGATAACACTGGTACTGGAGCTGTTT---T---GGGCATATCTTTGGA 1610
||| |||||| | || ||| ||| || ||||||||| | |||||||||| ||||
Sbjct 1551 TGACGTACTTTTTCATGACAGTGGCGCTCGAGCTGTTTCAGTTTTGGGCATATCTATGGA 1610
Query 1611 CATATCTAAGATCAATGAGTTGTTTCTGAATGAAAGA-GCTTTTGGTGGGATGCATAATC 1669
|||||||||||||||||||| || |||||| ||| || ||||||| ||||||| ||| |
Sbjct 1611 CATATCTAAGATCAATGAGTGGTATCTGAACGAA-GAAGCTTTTGCTGGGATGTTTAACC 1669
Query 1670 TGTTGTTTCTAAGATTCTACAAGTCCTCTTCGAGTAAAGATCAACCTGAGCT---TCATT 1726
|| ||||||| |||||||| |||||| |||| |||||||||||||| ||||| | |||
Sbjct 1670 TGATGTTTCTCAGATTCTATAAGTCCCCTTCAAGTAAAGATCAACCCGAGCTGAATTATT 1729
Query 1727 TACCTCGAGGCTTGGATTATTTACCCCGTAAACTTAGGCTGCTGCATTGGGATGCATTCC 1786
|||||| | ||||||||||||| |||| |||||||||||||||||||||||||||| ||
Sbjct 1730 TACCTCTACGCTTGGATTATTTGCCCCACAAACTTAGGCTGCTGCATTGGGATGCATGCC 1789
Query 1787 CCATGACATCAATGCCTC-TGAGTTTTTGTCCACAGTTTCTTGTTGTGATAAACATAAGG 1845
| |||| ||| ||||| | |||||||| ||||| |||||||||||||||| || ||||||
Sbjct 1790 CTATGAAATCTATGCC-CATGAGTTTTCGTCCAGAGTTTCTTGTTGTGATCAATATAAGG 1848
Query 1846 GAGAGCCAGCTTGAGAAGCTGTGGGAAGGAACACAACCTCTTAGAAGTCTAAAGCAG-AT 1904
|||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| | ||
Sbjct 1849 GAGAGCCAGCTTGAGAAGCTGTGGGAAGGAGCACCACCTCTTAGAAGTCTGAAGT-GTAT 1907
Query 1905 GGATTTAAGTAAGTCTGAGAATCTAAAAGAGATTCCTGATCTTTC-GAAAGCGGTAAATA 1963
|||||| |||| |||||||||||||||||||||||| |||||||| ||| || |||||||
Sbjct 1908 GGATTTGAGTATGTCTGAGAATCTAAAAGAGATTCCAGATCTTTCAGAA-GCTGTAAATA 1966
Query 1964 TCGAGGAACTCTGTCTCAGTTATTGTGGAAGTTTGGTGATGTTACCTTCCTCGATCAAGA 2023
|||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct 1967 TCGAAGAACTCTGTCTCAGTTATTGCCGAAGTTTGGTGTTGTTACCTTCCTCAATCAAGA 2026
Query 2024 ACCTCAACAAATTGGTTGTTCTTGACATGAAGTATTGCTCAAAGCTAGAGA-TTATCCCC 2082
|||| |||||| |||||||||| ||||||| ||| |||||||| || ||| || |||
Sbjct 2027 ACCTTAACAAACTGGTTGTTCTCGACATGACGTACTGCTCAAATCTGGAGTCTTTTCCGA 2086
Query 2083 TGCAATATGGACTTAGAGTCCCTTAGCATCCTCAATCTTGATGGATGCTCACGATTGGAG 2142
||||||| | || || || || ||||||||||| || ||| ||||||||||||||||
Sbjct 2087 -GCAATATCAAATTGGAATCTCTCAGCATCCTCAACCTCGATAGATGCTCACGATTGGAA 2145
Query 2143 AGTTTTCCAGAAATTTCTTCGAAGATTGGATTTCTCTCTCTGTCAGAAACTGCAATAGAA 2202
||||||||||||||||||||||| ||||||| ||||||||| ||||||||| ||||| ||
Sbjct 2146 AGTTTTCCAGAAATTTCTTCGAATATTGGATATCTCTCTCTATCAGAAACTTCAATA-AA 2204
Query 2203 GAAAT-T-CCCACAACAGTCGCGTCTTGGCCATGTCTGGCAGCATTGGACATGTCAGGCT 2260
|||| | ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2205 -AAATGTTCCCGCAACAGTCGCGTCTTGGCCATATCTGGAAGCATTGGACATGTCAGGCT 2263
Query 2261 GCAAGAACCTCAAGACGTTTCCATGTCTTCCAAAAACTATAGAATGGTTGGATTTGAGCA 2320
||| | ||||| | || ||||||| ||| || |||||||| ||||||||||| ||||||
Sbjct 2264 GCAGGTACCTCGATACATTTCCATTTCTGCCGGAAACTATAAAATGGTTGGATCTGAGCA 2323
Query 2321 GGACAGAGATCGAAGAAGTTCCTTTGTGGATCGATAAACTC-T-CAAAGCTCAATAAACT 2378
||| ||||||| ||||||| || || |||||||| | || | | |||||| |||||
Sbjct 2324 GGAAAGAGATCAAAGAAGTCCCCTTATGGATCGAGGATCTAGTTCT--GCTCAAGAAACT 2381
Query 2379 ATTGATGAACAGCTGCATGAAGCTAAGAAGCATCTCTTCTGGGATCTCTACG-CTGGAAC 2437
||||||||||||||||||| ||||||||||||||||||||||||| | || | |||||||
Sbjct 2382 ATTGATGAACAGCTGCATGGAGCTAAGAAGCATCTCTTCTGGGATTTGTA-GACTGGAAC 2440
Query 2438 ATATCAAAACACTAGATTTTTTGGGGTGCAAGAATATTGTGAGCTTTCCTGTAGAGATAT 2497
| ||| ||||||||||||| ||||| ||||||||| ||||||||||||| ||||||| |
Sbjct 2441 ACATCGAAACACTAGATTTCTTGGGTTGCAAGAATGTTGTGAGCTTTCCACTAGAGATCT 2500
Query 2498 TCGAGAGCTCTCGGTTCTGTCATAATCTGGTGATGGAGATGAGAAACATTCAAAACCCTG 2557
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2501 ACGAGAGCTCTCGGTTCTGTCATAATCTGGTGATGGAGATGAGAAACATTCAAAACCCTG 2560
Query 2558 ATCTTCCTCGACCATTTTATTTCAAGAACAACTATATTGACACTATTCCAGATTGTATTA 2617
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 2561 ATCTTCCTCGACCATTCTATTTCAAGAATAACTATATCGACACTATTCCAGATTGTATTA 2620
Query 2618 CACGTCACTGCAAGCTGCCTTTTCTGAATTCATCAGGATCAATCTCCAGCAAGATAGAGA 2677
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2621 CACGTCACTGCAAGCTGCCTTTTCTGAATTCATCAGGATCAATCTCCAGCAATATAGAGA 2680
Query 2678 ATGATTTCATCTGGTTCGATAAATAA 2703
||||||||||||||||||| |||||
Sbjct 2681 ATGATTTCATCTGGTTCGACGAATAA 2706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101967585865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5