BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18380.1
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488708 jgi|Araly1|488708|fgenesh2_kg.6__1842__AT2G09990.1 918 0.0
Ahg477683 jgi|Araly1|477683|fgenesh2_kg.3__384__AT3G04230.1 518 3e-146
> Ahg488708 jgi|Araly1|488708|fgenesh2_kg.6__1842__AT2G09990.1
Length=652
Score = 918 bits (497), Expect = 0.0
Identities = 602/649 (93%), Gaps = 21/649 (3%)
Strand=Plus/Plus
Query 1 ACTCTGTGCATTAGGTTTCATTTTAGCGGCAGACGAGAGAGCTAAAGCAAGGAGCAACCC 60
||||| |||||||||||||||||||||||||||| |||||| ||||||||||| |||||
Sbjct 25 ACTCTCTGCATTAGGTTTCATTTTAGCGGCAGAC--GAGAGCAAAAGCAAGGAGAAACCC 82
Query 61 TAACCATGGCGACTCAACCAGCTACTGAATCTGTGCAATGCTTCGGAAGGAAGAAGACCG 120
||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||
Sbjct 83 TAACCATGGCGACTCAAGCAGCTGCTGAATCTGTGCAATGTTTCGGAAGGAAGAAGACCG 142
Query 121 CAGTGGCCGTCACTCACTGCAAGCGTGGATCTGGTTTGATCAAGCTCAACGGTTGCCCAA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 143 CAGTGGCCGTCACTCACTGCAAGCGTGGATCTGGTTTGATCAAGCTCAACGGTTCCCCAA 202
Query 181 TCGAGCTTTTCCAGCCTGAGATCCTCCGATTCAAGATCTTCGAGCCGGTTCTTCTCCTCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 TCGAGCTTTTCCAGCCTGAGATCCTCCGATTCAAGATCTTCGAGCCGGTTCTTCTCCTCG 262
Query 241 GAAAGCACCGTTTCGCTGGTGTGAACATGAGGATCCGTGTCAACGGTGGTGGTCACACAT 300
|||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| |
Sbjct 263 GAAAGCACCGTTTCGCAGGTGTGGACATGAGGATTCGTGTCAACGGTGGTGGTCACACTT 322
Query 301 CCCAGGTTTACGCCATCCGTCAGAGTATCGCGAAGGCTCTTGTTGCGTACTACCAGAAGT 360
| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 323 CTCAGGTTTACGCTATCCGTCAGAGTATCGCGAAGGCTCTTGTTGCGTTCTACCAGAAGT 382
Query 361 ATGTGGATGAGCAGTCGAAGAAGGAGATTAAGGATATCTTGGTGAGGTATGATAGGACTC 420
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 383 ATGTGGATGAGCAATCGAAGAAGGAGATTAAGGATGTCTTGGTGAGGTATGATAGGACTC 442
Query 421 TGCTTGTGGCGGATCCGAGGAGGTGTGAGCCGAAGAAGTTTGGTGGTCGTGGTGCTCGTT 480
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 443 TGCTTGTGGCGGATCCGAGAAGGTGTGAGCCGAAGAAGTTTGGTGGTCCTGGTGCTCGTG 502
Query 481 CTCGTTACCAGAAGAGTTACCGTTAAACAAAGCTGGTTTGTGTTTTGTTTTTCAATTTGG 540
|||||| ||||||||||||||||||| | ||||| |||| ||||||||
Sbjct 503 CTCGTTTCCAGAAGAGTTACCGTTAA-------T--TTTGT-TTTT------CAATTTGG 546
Query 541 AATCATCGTAAGGtttttttGGGAGTATGGACTTGTGAGACTCTTTAGATTTTATAATTT 600
|||||||||||||||||||||| |||||| ||||||||||||||| ||| ||||||||||
Sbjct 547 AATCATCGTAAGGTTTTTTTGG-AGTATGAACTTGTGAGACTCTT-AGAATTTATAATTT 604
Query 601 CTGCTTTATTATGCTTGTTGGATTATGGTGATTCTCCAAGAAACTTATG 649
| | |||||||||||| |||||| |||||||||||||||||| ||||||
Sbjct 605 CAGTTTTATTATGCTTTTTGGATAATGGTGATTCTCCAAGAA-CTTATG 652
> Ahg477683 jgi|Araly1|477683|fgenesh2_kg.3__384__AT3G04230.1
Length=574
Score = 518 bits (280), Expect = 3e-146
Identities = 421/488 (86%), Gaps = 14/488 (3%)
Strand=Plus/Plus
Query 56 AACCCTAACCATGGCGACTCAACCAGCTACTGAATCTGTGCAATGCTTCGGAAGGAAGAA 115
||||||| | |||||||| ||| | || | || ||||| ||||||||||||||||||||
Sbjct 11 AACCCTAGCAATGGCGACCCAAGCGGCGAAAGAGTCTGTTCAATGCTTCGGAAGGAAGAA 70
Query 116 GACCGCAGTGGCCGTCACTCACTGCAAGCGTGGATCTGGTTTGATCAAGCTCAACGGTTG 175
||| || || |||||||| |||||||| || || || ||| |||| |||||||||||||
Sbjct 71 GACGGCCGTTGCCGTCACCCACTGCAAACGCGGCTCGGGTATGATTAAGCTCAACGGTT- 129
Query 176 C-CCAATCGAGCTT-TTCCAGCCTGAGATCCTCCGATTCAAGATCTTCGAGCCGGTTCTT 233
| || ||||||||| | ||||| ||||||||||||||||||||||| ||||| | |||
Sbjct 130 CGCCGATCGAGCTTCAT-CAGCCAGAGATCCTCCGATTCAAGATCTTGGAGCCAATCCTT 188
Query 234 CTCCTCGGAAAGCACCGTTTCGCTGGTG-TGAACATGAGGATCCGTGTC-AACGGTGGTG 291
|||||||| |||||||||||||| || | || ||||||||||||| ||| || |||||||
Sbjct 189 CTCCTCGGGAAGCACCGTTTCGCCGGAGTTG-ACATGAGGATCCGAGTCGAA-GGTGGTG 246
Query 292 GTCACACATCCCAGGTTTACGCCATCCGTCAGAGTATCGCGAAGGCTCTTGTTGCGTACT 351
|| ||||||||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||
Sbjct 247 GTAACACATCCCAGGTCTACGCAATCCGTCAGAGTATCGCTAAGGCTCTCGTTGCTTACT 306
Query 352 ACCAGAAGTATGTGGATGAGCAGTCGAAGAAGGAGATTAAGGATATCTTGGTGAGGTATG 411
||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct 307 ACCAGAAGTATGTGGATGAGCAGTCGAAGAAGGAGATCAAGGACATTTTGGTGAGGTACG 366
Query 412 ATAGGACTCTGCTTGTGGCGGATCCGAGGAGGTGTGAGCCGAAGAAGTTTGGTGGTCGTG 471
|||||||||| ||||| |||||||| |||||||| || ||||||||||||||||| |
Sbjct 367 ATAGGACTCTACTTGTTGCGGATCCTAGGAGGTGCGAATCGAAGAAGTTTGGTGGTAAAG 426
Query 472 GTGCTCGTTCTCGTTACCAGAAGAGTTACCGTTAAACAAAGCTGGTTTG--TGTTTT-GT 528
||||||||||||||| |||||||||||||||||||| || |||||||| | |||| ||
Sbjct 427 GTGCTCGTTCTCGTTTCCAGAAGAGTTACCGTTAAA-AAT-CTGGTTTGGCTTTTTTTGT 484
Query 529 TTT-TCAA 535
||| ||||
Sbjct 485 TTTATCAA 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26114198145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5