BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18400.2
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488714 jgi|Araly1|488714|fgenesh2_kg.6__1848__AT5G18400.2 1644 0.0
> Ahg488714 jgi|Araly1|488714|fgenesh2_kg.6__1848__AT5G18400.2
Length=1059
Score = 1644 bits (890), Expect = 0.0
Identities = 1007/1063 (95%), Gaps = 10/1063 (1%)
Strand=Plus/Plus
Query 1 AAAGGTCAGAAGATTTGATTTTTCTTATTCCTCTTCAAAGGCAAACAATTTACACAGCTA 60
||||||||||||||||||||| |||||||||||||| ||| |||| |||||||| || |
Sbjct 1 AAAGGTCAGAAGATTTGATTTCTCTTATTCCTCTTCGAAGCCAAAGAATTTACAGAGAGA 60
Query 61 TATATATAT-TTTTAGGGTTTTTGAGTATCTCGCGAGGTTTTACATAGATTTCTCCATTA 119
||||||| | |||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 61 TATATAT-TCTTTTAGGGTTTTTGAGTATCTCGCGAGGTTTTTCAGAGATTTCTCCAATA 119
Query 120 TGGATTCGATGATGAATCAGAAGACTGTTTTGGCTGTGACGGATGATGTGGTGTTACCTG 179
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 120 TGGATTCGATGGTGAATCAGAAGACTGTTTTGGCTGTGACGGATGATATGGTGTTGCCTG 179
Query 180 TTAGCTCTGTTTTAGCTATAATGAAAGAGCTTGGAAAGGAAGTGATTGAGA-GTTTTGAT 238
||||||||||| || ||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 180 TTAGCTCTGTTCTAACTATAATGAAAGAGCTTGGCAAGGAAGTGATTGA-ACGTTTTGAT 238
Query 239 CCTCTGATTATTACTCAAGCATCCACAATAAATCAGTTTCCTTTGGATGCTTCCTCTGTG 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 CCTCTGATTATTACTCAAGCATCCACAATAAATCAGTTTCCTTTGGATGCTTCCTCAGTG 298
Query 299 GAGGCGGTATTAGCCATTTCCAAAACATCTGA-TTTCCCAAGTGATAAAATATGTGGTGA 357
|| ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 299 GACGCGGTTTTAGCCATTTCCAAAACATCTGATTTTCCC-AGTGATAAAATATGTGGTGA 357
Query 358 GTTCTCAAGAATCTTGAAGCCTGGCGGCACGGTTTCTGTGTGCAAAGTTTTGGAGGGTGA 417
|||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct 358 GTTCTCAAGAATCTTGAAGCCTGGTGGCACTGTTTTTGTGTGCAAAGTTTTGGAGGGTGA 417
Query 418 AACGGGAGAAATTCAACAGACCATTCAAAGGAGAGTGACATTGGCTGGTTTTCTTGAGCC 477
||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 418 AACTGGAGAAATGCAACAGACCATTCAAAGGAGAGTGACGTTGGCTGGTTTTCTGGAGCC 477
Query 478 ACAGTGTCTTGATTTGAAATCAATTAAATTGTCTACGTTCAGTTTATCCTTTGGGATTAA 537
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 478 ACAGTGTCTTGATTTGAAATCAATTAAGTTGTCTACGTTCAGTTTATCCTTTGGGATTAA 537
Query 538 GGCAAAGAAACCTTCTTGGAAGATTGGTTCATCATTTGCTCTCAAAAAGCCTGTAACAAA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 538 GGCAAAGAAACCTTCTTGGAAGATTGGTTCATCATTTGCTCTCAAAAAGCCTGCAA-AAA 596
Query 598 T-CTCTTTAAGATTGATCTAGATGACGACGTGGATCTTATTGATGAAGATTCTCTTTTAA 656
| ||||| ||| || |||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 597 TTCTCTTAAAGGTTAATCTAGATGATGACTTGGATCTTATTGATGAAGATTCTCTTTTAA 656
Query 657 CAGAGGAGGACTTGATGAAGCCACAGCTTCCTGTTGCCAGCGGTTGTGAGACCACTAAAA 716
||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 657 CAGAGGAGGACTTGAAAAAACCACAGCTTCCTGTTGCCAGCGGTTGTGAGACCACCAAAA 716
Query 717 AAGCTTGCAAGAACTGCGTCTGTGGTAGAGCTGAAATTGAGGAGAAAGCTGTGAAGCTGG 776
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 717 AAGCTTGCAAGAACTGTGTCTGTGGTAGAGCTGAGATTGAGGAGAAAGCTGTGAAGCTGG 776
Query 777 GCCTCACAGAGGATCAAATCGAGAATCCACAATCATCATGCGGCAGCTGTGGGCTCGGTG 836
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 777 GCCTCACAGAGGATCAAATCGAGAATCCACAATCATCATGTGGCAGCTGTGGGCTCGGTG 836
Query 837 ATGCCTTCCGCTGCGGTACATGCCCTTACAAGGGTCTGCCACCCTTCAAATTAGGCGAGA 896
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ATGCCTTCCGTTGCGGTACATGCCCTTACAAGGGTCTGCCACCCTTCAAATTAGGCGAGA 896
Query 897 AGGTAACCCTATCTCAAAACTTCCTTGAAGCTGACATATAAGCATGTGAAAGG--CATCT 954
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 897 AGGTATCCCTATCTCAAAACTTCCTTGAAGCTGACATATAAGCATGTGAAAGGTGCATCT 956
Query 955 TCATACATGGGTGTTTCTCGCCGAGGCCAAAACCTTTTGCTAATCGCAGAGTAGTTTCAT 1014
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TCATACATGGTTGTTTCTCACCGAGGCCAAAACCTTTTGCTAATCGCAGAGTAGTTTCAT 1016
Query 1015 CATTTACTTTGTGCCCTTTCGTATAATTTGTTTGTTGGTACTT 1057
|||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1017 CATTTACTTTGTTCTCTTTCGTATAATTTGTTTGTTGGTACTT 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45175656645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5