BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18420.2
Length=1493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893763 jgi|Araly1|893763|Al_scaffold_0006_1759 2013 0.0
> Ahg893763 jgi|Araly1|893763|Al_scaffold_0006_1759
Length=1320
Score = 2013 bits (1090), Expect = 0.0
Identities = 1247/1322 (94%), Gaps = 14/1322 (1%)
Strand=Plus/Plus
Query 64 ATGATGATTATGAGGATTGAAGAGTCGGCGATTGTTTTGTCTCTGCTCAAATCGGATCTC 123
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGATTATGAAGATTGAAGAGTCGGCGATTGTTTTGTCTCTGCTCAAATCGGATCTC 60
Query 124 CGGCCGATGGAAGACGTTTTATCGGAATTCGACTCTAAGTTCGA--A-AGCGCTCGTTAC 180
||||||||||| |||||||||||||||||| |||| |||||||| | ||| |||||| |
Sbjct 61 CGGCCGATGGATGACGTTTTATCGGAATTCAACTCCAAGTTCGATGATAGCTCTCGTTTC 120
Query 181 CTCAGTGTCTGCAATTCTCTTTCCATGATGTTGCAGGATCAGCAGATGTTTAAGAATACT 240
|||||||||||||||||||||||||||||||||||||||| ||| | || ||||||||
Sbjct 121 TTCAGTGTCTGCAATTCTCTTTCCATGATGTTGCAGGATCAAAAGACGCTTCAGAATACT 180
Query 241 GAACGTCTAATTGCATTTGGTATCATATACCAGTGTTATTCTTCACAGAAGCCATCTTTC 300
||||||||||||||||||| ||||||| | |||||||||||||| |||||||||||| ||
Sbjct 181 GAACGTCTAATTGCATTTGCTATCATACATCAGTGTTATTCTTCCCAGAAGCCATCTCTC 240
Query 301 AACCCGTTTTTATCTGAAATGATAAGTGCTGCTTGTAATGAACAGCTGGAAAAGTCTGAA 360
||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||
Sbjct 241 AACCCGTTTTTATCTGAAATGATGAGTGCTGCTTGTAATGAGCAACTAGAAAAGTCTGAG 300
Query 361 AGGGCATTTCTTCTCCACCTGTTACAATGGAATAGTTACAACAACGTGAAAGAGATTCTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGGCATTTCTTCTCCACCTGTTACAATGGAATAGTTACAACAACGTGAAAGAGATTCTC 360
Query 421 AAACTCTCAGCTGTTGATTATATCAGATCGTTTGATCCTTCAACTCATGATTTTCCGGAA 480
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAACAGTCAGCTGTTGATTATATCAGATCGTTTGATCCTTCAACTCATGATTTTCCGGAA 420
Query 481 CTAGGAGAGCTGCAACGAGAGTATGGCGACAAAGCCGATCCTGGACCATCTAGTCACATT 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 CTAGGAGAGCTGCAACGAGAGTATGGTGACAAAGCCGATCCTGGACCATCTAGTCACATT 480
Query 541 TTTGCAGACTATTCCCTGAAAAAGCTATTGCATGATCCTGATGTTCCTCGTGGGTGTGAT 600
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 TTTGCAGACTATTCCCTCAAAAAGCTATTGCATGATCCTGATGTTCCTCGTGGGTGCGAT 540
Query 601 CCTAACTCTCCAGAGT-T-TG----ATGTGCAAGCTGGAGTGAATCCCAGAATTGGATCT 654
|||||||||||||||| | || |||||||| |||||| ||| |||||||||||||||
Sbjct 541 CCTAACTCTCCAGAGTATGTGTTTGATGTGCAACCTGGAGGGAACCCCAGAATTGGATCT 600
Query 655 GGTGATAGGGATGAGGCACTATCTGGATTCTTAGGAAATTTGACAATGGGGGGATTAGGT 714
||||||||||||||||| || ||||||||||| ||||||| ||||||||||||||||| |
Sbjct 601 GGTGATAGGGATGAGGCCCTGTCTGGATTCTTGGGAAATTCGACAATGGGGGGATTAGCT 660
Query 715 CCTAGGTGGATCCGTCCATGTCCACCAAGGTACCCAGTTCATCAGAGCGAGTTGCTTTGG 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCTAGGTGGATCCGTCCATGTCCACCAAGGTACCCAGTTCATCAGAGCGAGTTGCTTTGG 720
Query 775 ATTGACCCTGATAACAAGCATGAGCTTGTTTGGGACGATAAAATGTGTGCTGATACTAGC 834
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 721 ATTGATCCTGATAACAAGCATGAGCTTGTTTGGGATGATAAAATGTGTGCTGATACAAGC 780
Query 835 AGTGGTGCAACAGTTAGAGACTTGCTTGTTAAGGGTTTAAAGGTGACACTTTCACCTACG 894
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGAGGTGCAACAGTTAGAGACTTGCTTGTTAAGGGTTTAAAGGTGACACTTTCACCTACG 840
Query 895 GAGCAAGAGGACATCATTACAGAATTGGCAAATGACCCAAAGCTTGTCTTTCACTGCGGA 954
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 841 GAGCAAGAGGACATCACTACAGAATTGGCAAATGACCCAAAGCTTGTCTATCACTGTGGA 900
Query 955 ATAACTCCACGGAAGCTGCCGCAATTAGTAGAGCACAATCCTCAGATAGCAGTTGAAATT 1014
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 901 ATAACTCCACGGAAGCTGCCGCAATTAGTAGAGCATAATCCTCAAATAGCAGTTGAGATT 960
Query 1015 CTCACCAAGTTGAATAACTCCACAGAGATTAATGACTATTATGA-AGCTCTAGGAAATAT 1073
||||||||||||| ||| ||| |||| ||| |||||||| | | |||||||| || |||
Sbjct 961 CTCACCAAGTTGATTAAATCCCCAGATATTGCTGACTATTTT-ACAGCTCTAGTAAGTAT 1019
Query 1074 GGACATGAGCCTGCACTCAATGGAAGTTGTGAATAGGCTCACAACTGCAGTTGAACTTCC 1133
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1020 GGACATGAGCCTGCACTCAATGGAAGTTGTGAATAGGCTCACTACTGCAGTTGAACTTCC 1079
Query 1134 CAAGGACTTCATACGGATGTACATCACTAATTGCATATCGTCTTGTGAGAACGCTAAGCA 1193
|||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1080 CAAGGAATTCATACGGATGTACATAACTAATTGCATATCGTCTTGTGGGAACGCTAAGCA 1139
Query 1194 GCAAGACAAATACATGCAGAATAGGCTTGTACGGCTTGTTTGCGTCTTCTTGCAAAGCTT 1253
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1140 GCAAGACAAATACATGCAGAATAGGCTTGTACGGCTTGTTTGCGTATTCTTGCAAAGCTT 1199
Query 1254 AATTCGTAACAAGATCATCAACGTGAAGGATCTATTCATAGAAGTTCAAGCTTTCTGCAT 1313
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AATTCGTAACAACATCATCAACGTGAAGGATCTATTCATAGAAGTTCAAGCTTTCTGCAT 1259
Query 1314 TGAGTTTTCTCGGGTTCGAGAAGCAGCTGGTCTCTTCAGGCTTTTGAAA-CAATTGGA-T 1371
||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 1260 TGAGTTTTCTCGGATTCGAGAAGCAGCTGGTCTCTTCAGGCTTTTGAAAACA-TTGGAAT 1318
Query 1372 GA 1373
||
Sbjct 1319 GA 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55878389415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5