BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18430.1
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893764 jgi|Araly1|893764|Al_scaffold_0006_1760 1607 0.0
> Ahg893764 jgi|Araly1|893764|Al_scaffold_0006_1760
Length=1038
Score = 1607 bits (870), Expect = 0.0
Identities = 983/1039 (95%), Gaps = 2/1039 (0%)
Strand=Plus/Plus
Query 147 ATGTCTGGTCCGA-TAGTGGTGGAGGGACGTGCTTTTTTCGTGTTCGGTGACTCGCTCGT 205
|||||| ||| || | |||| |||| ||||||||||||||||||||| |||||||| ||
Sbjct 1 ATGTCTAGTCTGACCA-TGGTCGAGGCACGTGCTTTTTTCGTGTTCGGCGACTCGCTTGT 59
Query 206 CGACAGTGGCAACAACAACTATCTGGTGACAACTGCACGTGCCGACTCTCCACCGTATGG 265
||||||||| |||||||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 60 CGACAGTGGGAACAACAACTATCTGGTGACGACTGCACGTGCCGACTCTCTGCCTTATGG 119
Query 266 AATCGATTTTCCAACTCGGAGACCAACCGGCCGGTTTTCCAACGGTCTTAACATTCCAGA 325
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 120 AATCGATTTTCCTACTCGGAGACCAACCGGCCGGTTTTCCAACGGTCTAAACATACCAGA 179
Query 326 TCTTATCAGTGAGGCAATCGGTAACGAAGAGCCACCGTTACCTTACCTTAGTCCAGAGCT 385
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCTTATAAGTGAGGCAATCGGCAACGAAGAGCCACCGTTACCTTACCTTAGTCCAGAGCT 239
Query 386 AAGGGGCCGGAGTCTTCTTAACGGTGCTAATTTCGCCTCCGCTGGTATCGGAATTCTCAA 445
||||||||| || |||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 240 AAGGGGCCGAAGGCTTCTTAACGGTGCCAATTTCGCCTCGGCCGGTATCGGAATTCTCAA 299
Query 446 TGATACCGGATTTCAATTCATCAACATTATAAGAATGTACCAACAACTCGATTACTTCCA 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGATACCGGATTTCAATTCATCAACATTATAAGAATGTACCAACAACTCGATTACTTCCA 359
Query 506 ACAATACCAACAACGTGTGAGTCGCTTGATTGGGAAACCGCAAACTCAGCGGCTCGTGAG 565
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 360 ACAATACCAACAACGTGTGAGTCGCTTGATAGGGAAACCACAAACTCAGCGGCTCGTGAG 419
Query 566 TCAAGCGCTTGTATTAATCACGGTCGGTGGAAACGATTTTGTGAACAACTATTTCTTGTT 625
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 TCAAGCACTTGTATTAATCACGGTCGGTGGAAACGATTTCGTGAACAACTATTTCTTGTT 479
Query 626 TCCATATTCCGCTAGATCACGCCAATTCACTCTACCGGATTACGTCCGACTCCTAATTTC 685
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 480 TCCATATTCCGCTAGATCACGCCAATTCTCTCTACCGGATTACGTCCGACTCCTAATTTC 539
Query 686 TGAATACaaaaaaaTACTATTGAGGTTAAATTCACTTGGAGTGGGTCGAGTTCTAGTGAC 745
||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 540 TGAATACAAAAAAATACTACTGAGATTAAATTCACTTGGAGTTGGTCGAGTTCTAGTGAC 599
Query 746 AGGAGCTGGACCACTAGGATGTGCACCGGCCGAACTGGCGAGATCAGGTACGTCGAATGG 805
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 CGGAGCTGGACCACTAGGATGTGCACCGGCCGAACTGGCGAGATCAGGCACGTCGAATGG 659
Query 806 AAGATGCTCGGCCGAGCTACAACGAGCTGCATCTCTATATGATCCTCAGCTACTTCAAAT 865
||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct 660 GAGATGCTCGGCCGAGCTACAACGAGCTGCGTCTTTATATGATCCACAGCTACTTCAAAT 719
Query 866 GATAAATGAACTTAACaaaaaaaTTGGGAGAAATGTGTTTATTGCTGCTAACACTAACCA 925
|||||||| |||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 720 GATAAATGCACTTAACAAAAAGATTGGAAGAAATGTGTTTATTGCTGCAAACACTAACCA 779
Query 926 AATGCAAGAGGATTTTCTAAGCACTCCACGAAGATATGGATTTGTAACATCGAAGGTTGC 985
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 780 AATGCAAGAGGATTTTCTAAGCACTCCACGAAGATATGGATTTATAACGTCGAAGGTTGC 839
Query 986 TTGTTGCGGACAAGGGCCGTACAATGGGATGGGTTTGTGTACGGTTCTATCAAACTTGTG 1045
|||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct 840 TTGTTGCGGACAAGGGCCGTACAATGGGATGGGTTTGTGTACAGTACTATCGAATTTGTG 899
Query 1046 TCCGAACCGTGAGTTATACGTCTTTTGGGATGCGTTTCATCCGACTGAGAAAGCAAACCG 1105
||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 900 TCCGAACCGAGAGCTATACGTGTTTTGGGACGCGTTTCATCCGACTGAGAAAGCAAACCG 959
Query 1106 CATGATAGTCCGACATATCTTGACCGGTACCACCAAGTATATGAACCCCATGAACCTTAG 1165
||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 960 CATGATAGTTCGTCATATCTTGACCGGTACCTCCAAGTATATGAACCCCATGAACCTTAG 1019
Query 1166 CTCTGCTCTTGCCCTATGA 1184
|||||||||||||||||||
Sbjct 1020 CTCTGCTCTTGCCCTATGA 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48301735839
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5