BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18440.1
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488722 jgi|Araly1|488722|fgenesh2_kg.6__1856__AT5G18440.2 1714 0.0
> Ahg488722 jgi|Araly1|488722|fgenesh2_kg.6__1856__AT5G18440.2
Length=1506
Score = 1714 bits (928), Expect = 0.0
Identities = 1258/1408 (89%), Gaps = 59/1408 (4%)
Strand=Plus/Plus
Query 76 AGAGATTT-AAGTTTTAGAGTTCAAAAGCAATCCTAAAACCCTAAACCCTAAGCTGAGCA 134
|||||||| ||| |||||||||| ||| ||| |||||||||||||||| ||| |||||
Sbjct 15 AGAGATTTAAAG-CTTAGAGTTCATAAGTTATCGTAAAACCCTAAACCCT-AGCAGAGCA 72
Query 135 AAATCCTTCATAATGCGACCTCCGTACAATTCCTTCCAGCCTCAAGCTCGTCCTTATCGA 194
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 73 AAATCCTTCATAATGCGACCTCCGTTCAATTCCTTCCAGCCTCAAGCTCGTCCTTATCGA 132
Query 195 CCGcaacatcaactacaacaacaacaacagatcaatgggt-tttctaatc--atcaacaa 251
||||||||||||| |||||||| | | || | | ||| || || |||| ||
Sbjct 133 CCGCAACATCAACAACAACAAC-AGGTC-TCTCTCTTTCTATTT-TATTCTAATCACCAC 189
Query 252 caacaacaTAATGGGTATCAGAACCCAATGAACGCTAATCAATTAGGGATGATGAATCCA 311
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 190 CAACAACACAATGGGTATCAGAACCCAATGAACTCTAATCAATTAGGGATGATGAATCCA 249
Query 312 CAGATGATGAATAATCCAATGATGGGT--C----ACAA--C-ATGCCAATGCCCAATATG 362
|||||||||| |||||||||||||||| | |||| | || |||||||| ||||||
Sbjct 250 CAGATGATGAGTAATCCAATGATGGGTCACATGAACAATCCTATTCCAATGCCTAATATG 309
Query 363 CCAATACATCCTCAGTTCTTTAACAATATGCCT------CAACAACTTCCTCAGTTTGCT 416
|| |||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 310 CCTATACATCCTCAGTTCTTTAACAATATGCCTCAACAACAACAACTTCATCAGTTTGCT 369
Query 417 ATGCCCAACCATATCAACCAGCTACTTCCCAATCTCTTGGGGAATCTTCAGTTTGCAGTT 476
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 370 ATGCCCAACCATATCAACCAGTTACTTCCCAATCTCTTGGGCAATCTTCAGTTTGCAGTT 429
Query 477 GCTAACAGTAACCTTATGGGTCACTCTCTTCCCAACTTTTTCCAGCCTTCTCTTGAACC- 535
||||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||
Sbjct 430 GCTAATAGTAACCTTATGGGTCACTCACTTCCCAATTTTTTCCAGCCTAATCTTGAACCT 489
Query 536 TCATGCTTTCTCTTCTCGACCACAGCTTAATTCCTTTAACTCCCTTCCTTATCCTCCGGT 595
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 TC-TGCTTTCACTTCTCGACCACAGCTTAATTCCTTTAACTCCCTTCCTTATCCTCCGG- 547
Query 596 TCCAAATCCCCATCAAAATCACCAATCAG-GGCCTCCGGGTTTCTCAGAGCCAAGACCAC 654
| | | | ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 548 T-----T---C--C-AAATCACCAAT-TGCGGCCTCCGGGTTTCTCAGAGCCAAGACCAC 595
Query 655 -AG-GGGCAGTCTGTCGATA-ATACCAATGGTTCAGGTCCTAACGGGAATGATTTTCGAA 711
|| || | | |||||||| | ||||||||||| ||||||||||| |||||||||||||
Sbjct 596 AAGTAGG-AAT-TGTCGATAGA-ACCAATGGTTCCGGTCCTAACGGAAATGATTTTCGAA 652
Query 712 ATAAGTTT-CCAAAGCATCAAAATTTCAAAGGCCCTGGTCAAGGATTCCAGAGACCTCAG 770
|||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 ATAAATTTACCAAA-CATCAAAATTTCAAAGGCCCTGGTCAAGGATTCCAGAGACCTCAG 711
Query 771 TTGCATCAAGCAGATAATGGCAAGAGAAAGTCTGGATTCAATAAGGATCACAGGGGCAAA 830
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 712 TTGCATCAAGCAGATAATGGAAAGAGAAAGTCTGGATTCAATAAGGATCACAGGGGCAAA 771
Query 831 GGGAACAATAATAAGATGAAAACA-GGGCTCGATGGATCTGATACTGGTAACATAGCTAA 889
|||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||||||
Sbjct 772 GGGAACTATAATAAGATGAAAA-ATGGGCTCGATGGATCTGATGCTGGTAACATAGCTAA 830
Query 890 GGAGAAGAAAAGATCATATGCTTTGATGTATACACCAAGAGAAGTTCAGCAATGGCGTGA 949
|||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 831 GGAGAAGAAAAGATCATATGCTTTGATGTATACACCAAAAGACGTTCACCAATGGCGTGA 890
Query 950 AGCTCGACGTAAGAATTATCCAACGAAATTCCTTGTTGAAAAGAAAGTAAAGAAAAATGT 1009
|||||| |||||||||| |||||||| | || |||||||||||||||||||||||||||
Sbjct 891 AGCTCGGCGTAAGAATTTTCCAACGAGACTCAATGTTGAAAAGAAAGTAAAGAAAAATGT 950
Query 1010 TTCAGCCAGCATCCTTGATGAGGAAGCAAAAATGCGTCGTCAGCAACTCCGGGAAGTTTT 1069
|||||||||||||||||| || ||||||||| | |||||||||||||||||||||||| |
Sbjct 951 TTCAGCCAGCATCCTTGACGACGAAGCAAAACTTCGTCGTCAGCAACTCCGGGAAGTTCT 1010
Query 1070 AGCAAAGCAGGCTGAGTTAGGTGTTGAAGTTGCAGAAGTTCCTTCGCATTATTTATCCAA 1129
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1011 AGCAAAGCAGGCTGAGTTAGGTGTTGAAGTTGCAGAAGTTCCTTCACATTATTTATCTAA 1070
Query 1130 TA-ATGATGAACAAGTTAATGGAGATAGA-GGAAACAACAATGGGCGAAAGGGACGATTC 1187
|| | ||||||| |||| ||||||||| | ||| |||| |||||| ||||||| ||||
Sbjct 1071 TACA-GATGAACGAGTTCATGGAGATA-ATGGAGCCAACGATGGGCAAAAGGGAAAATTC 1128
Query 1188 CAGAATAATAGACGTAATAAGAGAAGACATGACAGAAAAGATAAGTTTGATAATAAGAAA 1247
||||| ||||||| ||| |||||||||||| |||||||| ||||||||||| ||||
Sbjct 1129 CAGAACAATAGACATAAGCAGAGAAGACATGGTAGAAAAGACAAGTTTGATAA---GAAA 1185
Query 1248 CCAAGATTGGAAGACAAAAAATCGTCTCAAGATTCTTCCATAACGACTAGAAAACCTACA 1307
|||||| | || |||||||| || |||||||| ||| |||| ||||||| ||||||||||
Sbjct 1186 CCAAGACTCGATGACAAAAATTCATCTCAAGAATCTCCCATGACGACTAAAAAACCTACA 1245
Query 1308 TTGCTTGAGAAGCTCCTAAGCGCAGACATAAAGAGAGACAAAAGCCAGT-TATTACAGGT 1366
||||||||||||||||||||| || |||||||||||||||||| ||| | ||||||||||
Sbjct 1246 TTGCTTGAGAAGCTCCTAAGCTCAAACATAAAGAGAGACAAAAACCA-TATATTACAGGT 1304
Query 1367 CTTCCGCTTCATGGTAATGAATTCATTGTTGAAGGAGTTTCCAGAGCAACCTCTGAAGTT 1426
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1305 CTTCCGCTTCATGGTAATGAATTCATTTTTGAAGGAGTTTCCAGAGCAACCTCTGAAGTT 1364
Query 1427 ACCTTTGATTACAGTAAAAGAAACTGGC 1454
|||||||||||| ||| |||||||||||
Sbjct 1365 ACCTTTGATTACGGTAGAAGAAACTGGC 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65400950665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5