BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18450.1
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941368 jgi|Araly1|941368|scaffold_601912.1 1315 0.0
> Ahg941368 jgi|Araly1|941368|scaffold_601912.1
Length=973
Score = 1315 bits (712), Expect = 0.0
Identities = 869/941 (92%), Gaps = 25/941 (3%)
Strand=Plus/Plus
Query 1 ATGGAAGAAGAGCAACCTCCGGCCAAGAAACGAAACATGGGGAGATCTAGAAAAGGTTGC 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 21 ATGGAAGAAGAGCAACCTCCGGCCAAGAAACGAAACATGGGAAGATCTAGAAAAGGTTGC 80
Query 61 ATGAAAGGTAAAGGCGGTCCAGAGAACGCCACGTGTACTTTCCGTGGAGTTAGGCAACGG 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 81 ATGAAAGGTAAAGGCGGTCCAGAGAACGCCACGTGTACTTTCCGTGGAGTCAGGCAACGG 140
Query 121 ACTTGGGGTAAATGGGTGGCTGAGATCCGTGAGCCTAACCGTGGGACTCGTCTCTGGCTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 ACTTGGGGTAAATGGGTGGCTGAGATCCGTGAGCCTAACCGTGGGACTCGTCTCTGGCTC 200
Query 181 GGCACGTTTAATACCTCGGTCGAGGCCGCCATGGCTTACGATGAAGCCGCTAAGAAACTC 240
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 201 GGCACGTTTAATACCTCAGTCGAAGCCGCCATGGCTTACGATGAAGCCGCTAAGAAACTC 260
Query 241 TATGGACACGAGGCTAAACTCAACTTGGTG------C-A-C-C--C-ACAACAACAACAA 288
|||||||||||||||||||||||||||||| | | | | | |||||||||||||
Sbjct 261 TATGGACACGAGGCTAAACTCAACTTGGTGCACCCACAATCACTACGACAACAACAACAA 320
Query 289 CAAGTAGTAGTGAACAGAAACTTGTCTTTTTCTG-GCCACGGGTCGGGTTCTTGGGCTTA 347
|||||||||||||||||||||||||||||||| | |||||||||| ||||||||||| |
Sbjct 321 CAAGTAGTAGTGAACAGAAACTTGTCTTTTTC-GAGCCACGGGTCAGGTTCTTGGGC-T- 377
Query 348 TAATAAGAAGCTCGATATGGTTCATGGGTTGGACCTTGGTCTCGGCCAGGCAAGTTGTTC 407
| | ||||| |||| ||||| || |||||||||||||||||||| ||||||| ||||
Sbjct 378 T-CT---AAGCTTGATACGGTTCCTGTGTTGGACCTTGGTCTCGGCCCGGCAAGTGGTTC 433
Query 408 ACGAGGTTCTTGCTCAGAGAGATCGAGTTTTCTACAAGAAGATGATGATCAT-AGTCATA 466
|||||||||||| |||| |||||||| ||||||||||||||| ||||||||| | | |||
Sbjct 434 ACGAGGTTCTTGGTCAGGGAGATCGAATTTTCTACAAGAAGACGATGATCATAAAT-ATA 492
Query 467 ATCGATGTTCGTCTTCAAGTGGTTCGAATCTTTGTTGGTTATTACCTAAACAAAGTGATT 526
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 ATCGAAGACCGTCTTCAAGTGGTTCGAATCTTTGTTGGTTATTACCTAAACAAAGTGATT 552
Query 527 CACAAGATCAAGAGACCGTTAATGCTACGACTAGTTATGGCGGTGAAGGCGGTGGTGGCT 586
|||||||||||||||||||||||||| ||| | ||| ||||| |||||||||||||||||
Sbjct 553 CACAAGATCAAGAGACCGTTAATGCTGCGAGTGGTTGTGGCGTTGAAGGCGGTGGTGGCT 612
Query 587 CTACGTTAACGTTTTCGACCAATTTGAAACCAAAGAA-TT--TGATGAGTCAGAATTATG 643
|||||||||||||||||||||| |||||||| ||||| || || |||||| |||| |||
Sbjct 613 CTACGTTAACGTTTTCGACCAAGTTGAAACCGAAGAACTTGGTGGTGAGTCCGAATAATG 672
Query 644 GATTATACAATGGAGCTTGGTCTAGGTTTCTTGTGGGGCAAGAAAAGAAGACGGAACATG 703
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 GATTATATAGTGGAGCTTGGTCTAGGTTTCTTGTGGGGCAAGAAAAGAAGACGGAACATG 732
Query 704 ACGTGTCATCGTCGTGTGGATCGTCGGACAACAAGGAGAGTATGTTGGTTCCTAGTTGCG 763
||||||||||||||||||| || || || || |||||||||||| |||||||||| |||
Sbjct 733 ACGTGTCATCGTCGTGTGGCTCATCTGATAATAAGGAGAGTATGGCGGTTCCTAGTGGCG 792
Query 764 GCGGAGAGAGGATGCATAGGCCGGAGTTGGAAGAGCGAACAGGATATTTGGAAATGGATG 823
| |||||||| ||||||||||||||| |||||||||| ||||| ||||||||||||||||
Sbjct 793 GTGGAGAGAGAATGCATAGGCCGGAGGTGGAAGAGCGTACAGGGTATTTGGAAATGGATG 852
Query 824 ATCTTTTGGAGATTGATGATTTAGGTTTGTTGATTGGCAAAAATGGAGATTTCAAGAATT 883
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 853 ATCTTTTGGAGATTGATGATTTGGGTTTGTTGATTGGCAAAAATGGAGATTTCAAGAATT 912
Query 884 GGTGTTGTGAAGAGTTTCAACATCCATGGAATTGGTTCTGA 924
|||||||||| ||||||||||||||||||||||||||||||
Sbjct 913 GGTGTTGTGAGGAGTTTCAACATCCATGGAATTGGTTCTGA 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34272502383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5