BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18460.1
Length=1847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488725 jgi|Araly1|488725|fgenesh2_kg.6__1859__AT5G18460.1 2785 0.0
> Ahg488725 jgi|Araly1|488725|fgenesh2_kg.6__1859__AT5G18460.1
Length=1801
Score = 2785 bits (1508), Expect = 0.0
Identities = 1739/1843 (94%), Gaps = 45/1843 (2%)
Strand=Plus/Plus
Query 1 GAATCTTGATTTGATCTTCTTCTCGAAAACCTCATTGCTTCTGCTTCTTCTCTTCCATTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 GAATCTTGATTTGATCTTCTTCTCGAAAACCTCATTGCTTCTGCTTCTTCTCTTCGATTT 60
Query 61 CCATATTTACACTTCATAATATCTCTTCACCCACTTCTCTTCTTCCCCATTTATAACTCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCATATTTACACTTCATAATATCTCTTCACCCACTTCTCTTCTTCCCCATTTATAACTCA 120
Query 121 CAAATATATACATACTCTTACATTTATATATCTTGGGCTAGCTAAGTAGCTATAGTAATT 180
||||||||||| | | || | ||||| | || || || ||||||||||||||
Sbjct 121 CAAATATATAC--A-T-TT--A--TATAT-T-TT-GG---GC----TAGCTATAGTAATT 162
Query 181 TTCTAATATCTCTTTCCA-TTTCTTGAAATGGTCCTCCTCTCACCTTAACTTT-ATAAGA 238
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 163 CTCTAATATCTCTTTCCATTTTCTTGAAATGGTCCTCCTCTCACCTTAACTTTAATAAGA 222
Query 239 ATCTGACCACCTCTCAGGTTTCCAGTTTCTTCACTTTCTCGTTCTCTGGACACTGAATGT 298
|||||||| ||||||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 223 ATCTGACCTCCTCTCA-GTTTCCAATTTCTTCACTTTCTCGTTCTTTGGACACTGAATGT 281
Query 299 GATACATATATAGAAGAAGAAAGCTATAAGAGATTGATCGATGGAGG-TGAATGTTCTTG 357
|||||||||||| |||||||||||| ||| |||| |||||||||||| || ||||||||
Sbjct 282 GATACATATATACAAGAAGAAAGCTTTAAAAGATCGATCGATGGAGGTTG-TTGTTCTTG 340
Query 358 CATCCAAGAGAAGTCTTCTCCTTTTTCTTCTTATTGTAAGTCTCTCTTTGAGCCAGAAGG 417
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 341 CATCCAAGAGAAGTCTTCTTCTTTTTCTTCTTATTGTAAGTCTCTCTTTGAGCCAGAAGG 400
Query 418 TCAGACATATCTCTGCCTTTAACGACACCAAACCATACAGACAAGTCAGTAGCTTGAGAC 477
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 401 TCATACATATCTCTGCCTTTAACGACAGCAAACCATACAGACAAGTCAGTAGCTTGAGAC 460
Query 478 TTGCGAGGATCCAAAAGCACTTGAACAAGATCAACAAGTCTCCTGTCTTCACCATTCAGA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 TTGCGAGGATCCAAAAGCACTTGAACAAGATCAACAAGTCTCCTGTCTTCACCATTCAGA 520
Query 538 GTCCAGATGGTGATGTAATAGATTGTGTACCCAAAAGAAAGCAGCCAGCTTTGGATCATC 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 GTCCAGATGGTGATGTAATAGATTGTGTACCCAAAAGAAAGCAGCCAGCTTTGGATCATC 580
Query 598 CACTCTTAAAGCATCACAAGATTCAGAAAGCACCGAAGAAAATGCCGAAGATGAAGGGAA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 CACTCTTAAAGCATCACAAGATTCAGAAAGCACCGAAGAAAATGCCGAAGATGAAGGGAA 640
Query 658 AAGATGATGATGTTAAAGAAGCAGAGAATGTATTGGAAGGTGCATGGCAAATGTGGCACG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 AAGATGATGATGTTAAAGAAGCAGAGAATGTATTGGAAGGTGCATGGCAAATGTGGCACG 700
Query 718 TGAACGGCACGAGGTGCCCTAAGGGGACCGTTCCCATACGACGCAACACAATGAACGATG 777
||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 701 TGAACGGCACGTGGTGTCCTAAGGGGACGGTTCCCATACGACGCAACACAATGAACGATG 760
Query 778 TGCTCAGAGCCAAGTCTTTGTTTGACTTTGGCAAAAAGCGACGGAGTATTTACCTTGATC 837
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 761 TGCTCAGAGCCAAGTCTTTGTTTGACTTTGGCAAAAAGAGACGGAGTATTGACCTTGATC 820
Query 838 AACGGACAGAAAAGCCTGATGCCCTTGGTACCAATGGACATGAGCATGCGATCGCTTATA 897
|| |||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 821 GACAGACAGAGAAGCCTGATGCACTTGGTACCAATGGACATGAGCATGCGATCGCGTATA 880
Query 898 CAGAATCATCGTCGGAGATATATGGAGCAAAGGCGACTATAAACGTTTGGGATCCAAAGA 957
| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 881 CGGAAACATCGTCGGAGATATATGGAGCAAAGGCGACGATAAACGTTTGGGATCCAAAGA 940
Query 958 TAGAAGAAGTGAATGAGTTTAGTCTCTCTCAGATTTGGATTCTCTCTGGATCTTTCGTAG 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 941 TAGAAGAAGTGAATGAGTTTAGTCTCTCTCAGATTTGGATTCTCTCTGGATCTTTCGTCG 1000
Query 1018 GTCCTGATCTCAATAGTATTGAAGCTGGCTGGCAGGTCAGTCCGGAGCTGTATGGTGACA 1077
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 GTCCTGATCTCAATAGTATAGAAGCTGGCTGGCAGGTCAGTCCGGAGCTGTATGGTGACA 1060
Query 1078 ACAGACCAAGATTGTTCACTTATTGGACGAGTGATTCATATCAAGCAACAGGATGTTACA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 ACAGACCAAGATTGTTCACTTATTGGACGAGTGATTCATATCAAGCAACAGGATGTTACA 1120
Query 1138 ATCTTCTATGTTCGGGATTTATCCAAACAAATAACAAGATTGCCATTGGAGCAGCCATAT 1197
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1121 ATCTTCTATGTTCTGGATTTATCCAAACAAATAACAAGATTGCCATTGGAGCAGCCATTT 1180
Query 1198 CTCCTCTTTCTACGTTCAAAGGAAACCAGTTTGATATCACAATACTCATTTGGAAGGATC 1257
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1181 CTCCTCTTTCTACTTTCAAAGGAAACCAATTTGATATCACAATACTCATTTGGAAGGATC 1240
Query 1258 CGAAAATGGGGAATTGGTGGATGGGTTTAGGGGATAGCACACTAGTCGGGTATTGGCCAG 1317
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1241 CGAAAATGGGGAATTGGTGGATGGGTTTAGGGGACAGTACACTAGTGGGGTATTGGCCAG 1300
Query 1318 CCGAGCTATTCACGCACTTGGCCGACCACGCGACTACCGTGGAATGGGGCGGTGAAGTCG 1377
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1301 CCGAGCTATTCACACACTTGGCCGACCACGCGACTACCGTGGAATGGGGCGGTGAGGTTG 1360
Query 1378 TCAACACACGTGCTTCAGGCAGGCACACGACGACCCAAATGGGCTCTGGTCATTTTCCAG 1437
| |||||||| ||||||||| |||||||||| ||||||||||| ||||||||||||||||
Sbjct 1361 TGAACACACGAGCTTCAGGCCGGCACACGACAACCCAAATGGGTTCTGGTCATTTTCCAG 1420
Query 1438 ACGAAGGGTTTGGGAAAGCAAGTTATTTTCGGAATTTGGAAGTTGTGGATTCGGACAACA 1497
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1421 ACGAAGGATTTGGAAAAGCAAGTTACTTTCGGAATTTGGAAGTTGTGGATTCGGACAACA 1480
Query 1498 GTCTCGTACCGGTGCATGATGTCAAGATACTAGCCGAGAACACCGAATGTTACGACATTA 1557
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1481 GTCTCGTACCGGTGCGTGATGTCAAGATATTAGCCGAGAACACCGAATGTTACGACATTA 1540
Query 1558 AGAGTTCGTATAGTAATGAATGGGGAACTTATTTTTACTATGGTGGGCCGGGGTTTAATC 1617
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 AGAGTTCGCATAATAATGAATGGGGAACTTATTTTTACTATGGTGGGCCGGGGTTTAATC 1600
Query 1618 CTAGGTGTAATTGAAATTAAAGTGTACATAGTTCGGGTTGGAGGAGTGGAGGaaaaaaaa 1677
|||||||||||||||||| | | ||| || |||||||||| ||||||||
Sbjct 1601 CTAGGTGTAATTGAAATT---G-G------GTT-GG-----AGGAGTGGAGAAAAAAAAA 1644
Query 1678 GAGGGGGTCGAAATATGTAAtttttttCAAGTATGGGTAGTGAAAGATTGAATATTGGCT 1737
||||| ||||| ||||||||||||| ||| || ||||||||||| ||||||||||||||
Sbjct 1645 AAGGGG-TCGAA-TATGTAATTTTTT-CAATTACGGGTAGTGAAA-ATTGAATATTGGCT 1700
Query 1738 TATTGTTTTTGATTTGTCATATTGTTGGTTGAAATCTAGTAATTTATTGCCCTCATAGGA 1797
|||||||||||||||||| | | ||||||| ||||||||||||||||||| ||||||| |
Sbjct 1701 TATTGTTTTTGATTTGTCGT-T-GTTGGTTTAAATCTAGTAATTTATTGCACTCATAGAA 1758
Query 1798 AAAAGAAGTGTGTATGCAATAATGAAAGTATGAGACAAATTTT 1840
||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1759 AAAAGAAGTGTGTATGCAATAATGAAAGTATGAGATAAATTTT 1801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69362336145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5