BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18470.1
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488726 jgi|Araly1|488726|fgenesh2_kg.6__1860__AT5G18470.1 2259 0.0
> Ahg488726 jgi|Araly1|488726|fgenesh2_kg.6__1860__AT5G18470.1
Length=1454
Score = 2259 bits (1223), Expect = 0.0
Identities = 1385/1462 (95%), Gaps = 16/1462 (1%)
Strand=Plus/Plus
Query 32 CACTTATACAAAGTTCTACGAAACTCATTAAAGATTTGAGAGTGTACAAGGGACAAAAGG 91
||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1 CACTTATTCAAAGTTCTACAAAACTCATTAAAGATTTGAGAGTGTAAAAGGGACAAAAGG 60
Query 92 TGCTATAAATATCTCTTA-AAAGAGAGCTAAAAGTTAAGGAAACACTTAACCAAGCAAAC 150
|||||||||| |||| || ||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 TGCTATAAATCTCTC-TATAAAGAGAGCTAAAAGTTAAACAAACACTTAACCAAGCAAAC 119
Query 151 AACAAATGGCTCTTTCAATCGTTCTTCTTCCCTTCATTCTCATTCTCATACCGACTTTTC 210
||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||
Sbjct 120 AACAAATGGCTCTTTCACTCGTTCTTGTTCCCTTCATTTTCCTTCTCATACCGACTTTTC 179
Query 211 TCAGTTCGGTTTTCGCCGTTTCACCACTCAAAACTGATACGTTAAAACCGGGGCAGCAGC 270
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 TCAGTTCGGTTTTCGCCATTTCACCACTCAAAACTGATACGTTAAAACCAGGGCAGCAGC 239
Query 271 TCAGAGACTGGGAGCAGTTGATCTCTGCGGATGGTATCTTCACTCTCGGATTCTTTACAC 330
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 240 TCAGAGACTGGGAGCAGTTGATCTCTGCGGGTGGTATCTTCGCTCTCGGATTCTTTACAC 299
Query 331 CTAAAGACTCATCTACTTCCGAACTCGGGTCAGCTGGTCTTAGATATCTTGGTATTTGGC 390
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 300 CTAAAGAATCATCTACTTCCGAACTCGGGTCAGCTGGTCCTAGATATCTTGGTATCTGGC 359
Query 391 CTCAAAGTATTCCAATAAATCTAGTTTGGGTGGGTAACCCAACCGAATCAG-TTTCTGAT 449
||||||| ||||||||||||| |||||||||||||||||||| |||||| | ||||||||
Sbjct 360 CTCAAAGGATTCCAATAAATCCAGTTTGGGTGGGTAACCCAATCGAATC-GATTTCTGAT 418
Query 450 TCATCTGGTTCTCTATCCATTGACACCAATGGGGTTCTAAAGATAACACAGGCAAACGCT 509
||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 419 TCATCTGGTGCTCTATCCATTGACACCAATGGGGTTCTAAAGATAACACAAGAAAATGCT 478
Query 510 ATTCCAATCTTGGTGAACCAAAGACCAGCC-GCGCAGCTTTCATTGGT-CGGGAATGTGT 567
||||||||||||||||||||||||||||| | |||||||||||| || |||||||||||
Sbjct 479 TTTCCAATCTTGGTGAACCAAAGACCAGCCAG-GCAGCTTTCATT-GTCCGGGAATGTGT 536
Query 568 CTGCCATTTTACTCGATACCGGGAACTTTGTGGTCCGAGAGATCAGGCCAGGAGGAGTTC 627
|||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 537 CTGCCACTTTACTCGATTCCGGGAACTTTGTGGTCAGAGAGATCAGGCCAGGAGGAGTTC 596
Query 628 CGGGTCGTGTTCTATGGCAAAGCTTTGACCATCCCACAAACACATTACTTCCCGGGATGA 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CGGGTCGTGTTCTATGGCAAAGCTTTGACCATCCCACAAACACATTACTTCCCGGGATGA 656
Query 688 AGATTGGGTTTAACCTAAGAACCAAGAAAGAAGTATCAGTTACGTCTTGGATAACTGACC 747
|||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||
Sbjct 657 AGATTGGGTTTAACCTTAGAACCAAGAAAGAAGTATCAGTTACTTCTTGGATAAGTGACC 716
Query 748 AAGTCCCAGTCCCAGGAGCATTCAGACTAGGACTAGACCCATCAGGAGCTAACCAGTTAC 807
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 717 AAGTCCCAGTCCCAGGAGCATTCAGACTAGGACTAGACCCATCAGGAGCAAACCAGTTAC 776
Query 808 TCGTCTGGCGCCGCGGGGAAATCTACTGGTCCAGTGGAATCTTGACGAACAATGGAAGCT 867
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TCGTCTGGCGCCGAGGTGAAATCTACTGGTCCAGTGGAATCTTGACGAACAATGGAAGCT 836
Query 868 CTCATTTGAACTTAGAAG-TATCCAGACACTACATTGATTATGAATTCAAGTTCGATTCA 926
||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTCATTTGACCTTAGA-GCTATCCAGACACTACATTGATTATGAATTCAAGTTCGATTCA 895
Query 927 AATAAGTACATGAAGTACTTCAGCTACTCAATCAAGAAAGCTAATAGTTCGGTCTTTTCC 986
||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 896 AATAAGTACATGAGGTACTTCAGCTACTCAATCAAGGAAGCTAACAGTTCGGTCTTGTCC 955
Query 987 AGCTGGTTCTTGGATACTCTAGGCCAAATCACTGTAACCTTT-TCTCTCAGCAGTAACAA 1045
||||||||||||||||||||||||||||||||||||||| | | |||||||| |||||
Sbjct 956 AGCTGGTTCTTGGATACTCTAGGCCAAATCACTGTAACCAATGTG-CTCAGCAGCAACAA 1014
Query 1046 TAGCAGCACCTGGATTTCCGAAAGCAGTGAACCCTGCAAGACGGATTTAAAGAACAGTTC 1105
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AAGCAGCAACTGGATTTCCGAAAGCAGTGAACCCTGCAAGACGGATTTAAAGAACAGTTC 1074
Query 1106 AGCAATCTGCATCACGGAGAAGCCAACGGCTTGTAGGAAAGGGTCAGAGTATTTCGAACC 1165
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 AGCAATCTGCATCAAGGAGAAGCCAACGGCTTGTAGGAAAGGGTCAGAGTATTTCGAACC 1134
Query 1166 CAGAAGAGGATACATGATGGAAAATAATACCGGTTATTATCCATTTTACTATGACGATAG 1225
|||||||||||||||||||| ||||||| |||||||||||| ||||||||||| |||||
Sbjct 1135 GAGAAGAGGATACATGATGGATAATAATAACGGTTATTATCCGTTTTACTATGATGATAG 1194
Query 1226 TTTGAGCGCTGGTCTTAGCGACTGTCATGGAACCTGCTGGAGAAACTGTTCTTGCATAGC 1285
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1195 TTTAAGCGCTGGTCTTAGCGACTGTCATGGAAACTGCTGGAGAAACTGTTCTTGCATAGC 1254
Query 1286 TTTCCAAGCCTTTCCTGATGGATGCCAATATTGGGAAAAAGGATCAAAGTTTGTTCC-TT 1344
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1255 TTTCCAAGCCTTTCCTGATGGATGCCAATATTGGGAAAAAGGATCAAAGTTTGT-CCATT 1313
Query 1345 ATGATAGCTTCAACTCCAATTTAGTAACTTATGTTCTTGATTCTGTAAAGTGATGTGTGG 1404
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1314 ATGATAGCTTCAACTCCAATTTAATAACTTATGTTCTTGATTCTGTTAAGTGATGTGTGG 1373
Query 1405 TTGTAACTTG-AACGAGCAATTATGTAACCAGACTAGTATCAGTAAAGGGGTTTATTAAG 1463
||| |||||| || ||| |||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 1374 TTGCAACTTGTAA-GAGTAATTATGTAACCAGACTAGTATCAATAAAGGGCTTTATCAAG 1432
Query 1464 AAACTAAAGAATCAAGCAGTTC 1485
|| |||||||||||||||||||
Sbjct 1433 AAGCTAAAGAATCAAGCAGTTC 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55726028435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5