BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18475.1
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488727 jgi|Araly1|488727|fgenesh2_kg.6__1861__AT5G18475.1 2403 0.0
> Ahg488727 jgi|Araly1|488727|fgenesh2_kg.6__1861__AT5G18475.1
Length=1577
Score = 2403 bits (1301), Expect = 0.0
Identities = 1490/1581 (94%), Gaps = 13/1581 (1%)
Strand=Plus/Plus
Query 88 CGGTGGTGCCGTCAATCCAATAA-G-AGGAGATACAATGCGCTTCACAACTTCGATAATC 145
||||||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||
Sbjct 1 CGGTGGTGCCGTCAATCCAATAAGGTAAGAGATACAATGCGTTTCACAACTTCGATAATC 60
Query 146 AATGAACATCGCCGGTTCTCATCGTCTTCACGATCATGGGTATCTCCCATTTGCTTCTCG 205
||||| ||||||||||||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 61 AATGAGCATCGCCGGTTCTCATCATCGTCAAGATCATGGGTATCTCCCATTTGCTTCTCG 120
Query 206 GAGAAGAAGAAG-A-AACCAAG-CCCACCACCAGAATCCTCTATCTCACCTGTGGAAACA 262
|||||||||||| | || | || ||||||||| |||||||| |||||| || ||||||||
Sbjct 121 GAGAAGAAGAAGAAGAAGCTAGACCCACCACCTGAATCCTCAATCTCAACTATGGAAACA 180
Query 263 AACCCCAAAACCAAGTTTATCTCTCACGAATCTGCTGTCAGTTTGATGAAACGAGAGAGA 322
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 AACCCCAAAACCAAGTTTATCTCTCACGAATCTACTGTCAGTTTGATGAAACGAGAGAGA 240
Query 323 GATCCTCAGGGTGTGCTTGATATCTTCAACAAAGCTTCTCAGCAGAAAGGTTTTAACCAT 382
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATCCTCAACGTGCGCTTGATATCTTCAACAAAGCTTCTCAGCAGAAAGGTTTTAACCAT 300
Query 383 AACAATGCTACATACTCTGTTCTTTTAGATAATCTCGTTAGGCACAAGAAGTTTCTAGCT 442
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 301 AACAATGCTACATACTCTGTTCTTTTGGATAACCTCGTTAGGCACAAGAAGTTTCTAGCT 360
Query 443 GTTGATGCCATTCTTCATCAGATGAAGTATGAGACTTGCAGGTTCCAAGAAAGTTTGTTT 502
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 361 GTTGATGCTATTCTTCATCAGATGAAGTACGAGACTTGCAGGTTCCAGGAAAGTTTGTTT 420
Query 503 CTTAACCTGATGAGACATTTCTCCAGGTCTGATTTGCATGATAAAGTTATGGAGATGTTT 562
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 CTTAACCTGATGAGACATTTCTCCAGGTTTGATTTGCATGATAAAGTTATGGAGATGTTT 480
Query 563 AACTTGATTCAAGTGATTGCTCGTGTCAAGCCTTCTCTCAATGCCATTAGTACTTGTTTG 622
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 AACTTGATTCAAGTGATTGCTCGTGTGAAGCCTTCTCTCAATGCCATTAGTACTTGTTTG 540
Query 623 AATCTCCTTATTGATTCAGGGGAGGTTAATTTGTCCCGGAAACTACTCTTGTATGCCAAA 682
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 541 AATCTCCTTATTGATTCAGGGGAGGTTGATTTGGCCCGGAAACTACTCTTGTATGCCAAA 600
Query 683 CACAATCTTGGATTGCAGCCAAATACTTGCATTTTCAATATTCTAGTGAAGCACCACTGC 742
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 601 CACAATCTTGGATTGCAGCCAAATACTTGCATTTTCAATATTTTAGTGAAGCACCACTGC 660
Query 743 AAGAATGGGGATATCAATTTTGCGTTTCTAGTTGTGGAGGAGATGAAAAGGTCTGGGATT 802
||||||||||||||| ||| ||| |||| ||||||||||||||||||||| |||||||||
Sbjct 661 AAGAATGGGGATATCGATTCTGCATTTCGAGTTGTGGAGGAGATGAAAAGATCTGGGATT 720
Query 803 TCGTATCCCAATTCGATCACTTACTCAACCCTTATGGACTGTCTGTTTGCACACTCGAGA 862
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCGTATCCCAATTCGATCACTTACTCAACCCTTATGGACTGTCTGTTTGCACACTCGAGG 780
Query 863 TCGAAAGAAGCGGTGGAATTGTTCGAGGATATGATCTCG-AAAGAAGGGATTTCGCCAGA 921
|| |||||||||||||||||||| ||||||||||||||| |||| ||||||||| || ||
Sbjct 781 TCCAAAGAAGCGGTGGAATTGTTTGAGGATATGATCTCGAAAAG-AGGGATTTCACCGGA 839
Query 922 CCCTGTGACTTTCAATGTTATGATCAACGGATTCTGTCGTGCAGGGGAAGTTGAGAGAGC 981
|||||||| |||||| ||||||||||| |||||||||||| |||||||||| || |||||
Sbjct 840 CCCTGTGATTTTCAACGTTATGATCAATGGATTCTGTCGTTCAGGGGAAGTCGAAAGAGC 899
Query 982 CAAGAAGATTTTAGACTTCATGAAGAAGAATGGGTGCAACCCAAATGTGTACAATTACTC 1041
||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 900 CAAGATGATTTTAGACTTCATGAAGAAGAATGGATGCAACCCAAACGTATACAATTACTC 959
Query 1042 AGCTCTAATGAATGGGTTTTGTAAAGTGGGAAAGATTCAGGAAGCTAAACAAACT-TTTG 1100
||||||||||||||||| ||||||| ||||||||||||||||||||||| || | ||||
Sbjct 960 GGCTCTAATGAATGGGTTCTGTAAAGAGGGAAAGATTCAGGAAGCTAAAC-AAGTCTTTG 1018
Query 1101 ACGAGGTGAAGAAAACGGGGTTGAAACTCGACACTGTTGGTTATACCACATTGATGAACT 1160
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1019 ACGAGGTGAAGAAAACCGGGTTGAAACTCGACACAGTTGGTTATACCACATTGATGAACT 1078
Query 1161 GCTTTTGTAGAAATGGTGAAACTGATGAGGCTATGAAACTACTTGGAGAGATGAAAGCAT 1220
|||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1079 GCTTGTGTAGAAATGGTGAAATTGATGAGGCTATGAAGTTACTTGGAGAGATGAAAGCAT 1138
Query 1221 CCAGATGCAGAGCTGATACATTAACTTATAATGTAATACTCAGGGGCTTGTCCAGCGAAG 1280
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CCAGATGCAGGGCTGATGCATTAACTTATAATGTAATACTCAGGGGCTTGTCCAGCGAAG 1198
Query 1281 GAAGATCAGAGGAAGCTCTTCAGATGCTGGATCAATGGGGATCTGAAGGAGTTCATCTGA 1340
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1199 GAAGATCAGAGGAAGCTCTTCAGATGCTGGATCAATGGGGATGTGAAGGAGTTCATCTTA 1258
Query 1341 ACAAAGGTAGTTATAGGATCATATTGAACGCGTTGTGTTGTAATGGTGAGCTCGAGAAAG 1400
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1259 ACAAAGGTAGTTATAGGATCATACTGAACGCGTTGTGTTGTAATGGCGAGCTCGAGAAAG 1318
Query 1401 CGGTGAAGTTTCTGAGTGTGATGTCTGA-GAGAGGGATTTGGCCTCACCATGCTACTTGG 1459
|||| |||||| ||||||||||||| || |||||||||||||||||||||||| ||||||
Sbjct 1319 CGGTAAAGTTTATGAGTGTGATGTC-GAAGAGAGGGATTTGGCCTCACCATGCGACTTGG 1377
Query 1460 AATGAATTGGTGGTTCGGCTTTGCGAATCCGGGTATACAGAAATCGGGGTTCGGGTTCTT 1519
||||||||||||||||||||||| ||||||||| |||||||||| |||||||| |||||
Sbjct 1378 AATGAATTGGTGGTTCGGCTTTGTGAATCCGGGAATACAGAAATTGGGGTTCGAGTTCTG 1437
Query 1520 ATTGGATTTCTGAGGA-TAGGTCTCATACCAGGGCCCAAATCTTGGGGAGCTGTGGTTGA 1578
||||||||||| ||| |||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1438 ATTGGATTTCTT-GGAATAGGTCTCCTACCAGCGCCCAAATCTTGGGGAGCTGTGGTTGA 1496
Query 1579 ATCAATTTGTAAAGAGAGGAAGTTGGTGCATGTCTTTGAACTGCTTGATTCTTTAGTTTC 1638
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1497 ATCAATTTGCAAAGAGAGGAAGTTGGTGCATGTCTTTGAACAGCTTGATTCTTTAGTTTC 1556
Query 1639 TTAATAAACCCCTTTACTGAT 1659
|| ||||| ||||||| ||||
Sbjct 1557 TTGATAAAACCCTTTATTGAT 1577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62239460330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5