BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18480.1
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488728 jgi|Araly1|488728|fgenesh2_kg.6__1862__AT5G18480.1 2772 0.0
> Ahg488728 jgi|Araly1|488728|fgenesh2_kg.6__1862__AT5G18480.1
Length=1805
Score = 2772 bits (1501), Expect = 0.0
Identities = 1718/1820 (94%), Gaps = 25/1820 (1%)
Strand=Plus/Plus
Query 28 AACGAAGAAAATTCAAAATCTTATTTCAATTCAACGTATACTTTCCTTAAATTAGGAATT 87
|||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1 AACGAAGAAATTTCAAAATC-TATTTCAATTCAACGTATACTTTCCTCAAATTAGGAATT 59
Query 88 TGGTTT-TCGAGAAAATTGAGATCCGAATAACTATGGTGAGACTCAAGACGAGTCTCTGG 146
| ||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 T--TTTCTCCACAAAATTGAGATCCGAATAACTATGGTGAGACTCAAGACGAGTCTCTGG 117
Query 147 GTTCTTCTCCTTGCCCTCG-TT--TCAATTCAGTTAAATGGTTCGTTTGGATCTGAATCA 203
||||||||||| || |||| || |||||||||||||| |||||||||||||||||| ||
Sbjct 118 GTTCTTCTCCTCGCGCTCGTTTCATCAATTCAGTTAAAGGGTTCGTTTGGATCTGAACCA 177
Query 204 AGTAAAGTAGCTTATGTCACACTTTTGTATGGAGATGAGTTCTTATTAGGAGTTAGGGTA 263
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 178 AGTAAAGTAGCTTATGTCACACTTTTGTATGGTGATGAGTTCTTATTGGGAGTTAGGGTA 237
Query 264 TTGGGTAAATCGATTCGTGACACTGGATCCACTAAGGATATGGTCGCTTTGGTTTCTGAT 323
||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 238 TTGGGAAAATCGATTCGTGACACTGGATCCAAAAAAGATATGGTCGCTTTGGTTTCTGAT 297
Query 324 GGTGTCTCAGACTACTCTAAGAAGTTACTCAAGGCTGATGGATGGAAAGTAGAGAAGATT 383
|||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||
Sbjct 298 GGTGTCTCAGACTACTCTAACAAGCTACTCAAGGCTGATGGATGGAAAGTTGAGAAGATT 357
Query 384 AGTTTACTGGCAAATCCAAATCAAGTTCATCCGACTAGGTTCTGGGGTGTTTATACAAAG 443
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 358 AGTTTACTGGCAAATCCAAATCAAGTTCATCCGACAAGGTTCTGGGGTGTTTATACAAAG 417
Query 444 CTTAAGATCTTTAACATGACTGATTATAAGAAAGTTGTGTATCTTGATGCTGATACTATT 503
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 418 CTTAAGATCTTTAACATGACTGATTACAAGAAAGTTGTGTATCTTGATGCTGATACTATT 477
Query 504 GTGGTAAAGAACATTGAGGATCTGTTTAAGTGTTCTAAGTTTTGCGCAAACTTGAAGCAT 563
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 478 GTGGTAAAGAACATTGAGGATCTGTTCAAGTGTTCCAAGTTTTGCGCAAACTTGAAGCAT 537
Query 564 TCTGAGAGGCTAAACTCTGGTGTGATGGTTGTTGAACCATCTGAAGCTCTTTTTAATGAC 623
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 538 TCTGAGAGGCTAAACTCTGGTGTCATGGTTGTTGAACCATCTGAAGCTCTTTTCAATGAT 597
Query 624 ATGATGCGGAAAGTGAAGACTTTGTCTTCTTATACTGGAGGAGATCAAGGGTTCTTGAAT 683
|||||||| ||||| ||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 598 ATGATGCGAAAAGTCAAGACTTTGTCATCTTATACCGGAGGAGACCAAGGGTTCTTGAAT 657
Query 684 TCGTATTATCCGGATTTCCCGAATGCTCGTGTTTTCGATCCTAGTGTAACTCCTGAAGTC 743
|| || ||||| |||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 658 TCCTACTATCCAGATTTCCCAAATGCTCGTGTTTTCGATCCGAGTGTAACCCCTGAAGTC 717
Query 744 TTGAAAACCAGACCAGTTCCTGCTATGGAGAGGCTTTCGACATTATACAATGCGGATGTT 803
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 718 TTGAAAACCAGACCAGTTCCTGCTATGGAGAGGCTTTCTACATTATACAATGCGGATGTT 777
Query 804 GGTCTTTATATGCTTGCTAATAAGTGGATGGTTGATGACAGTAAACTTCACGTCATTCAC 863
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 778 GGTCTTTATATGCTTGCTAATAAGTGGATGGTTGATGACAGTAAACTTCACGTTATTCAC 837
Query 864 TACACTCTAGGCCCTCTTAAGCCTTGGGACTGGTGGACAGCATGGCTCGTGAAACCTGTT 923
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 838 TACACTCTAGGCCCTCTTAAGCCTTGGGACTGGTGGACAGCATGGCTTGTGAAACCTGTT 897
Query 924 GATGCTTGGCATAGCATTAGGGTAAAGCTTGAGGAAACTCTTCCTGGAACTGGAGGTGGT 983
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 898 GATGCTTGGCAAAGCATTAGGGTAAAGCTTGAGGAAACTCTTCCTGCAACTGGAGGTGGC 957
Query 984 AGTAACCAACATGATGAACTCGTCGTCAAGTTCCTTTTCTTGTTACCTCTTTGTGCACTT 1043
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 958 AAAAACCAACATGATGAACTCGTCGTCAAGTTCCTTTTCTTGTTACCTCTTTGTGGACTT 1017
Query 1044 TTGTTCTGCATTTACCGATCCATTCAGGGCCGTGAGGGTTCATTGTGCTGGAGCTCGTTC 1103
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1018 TTGTTCTGCATTTACCGATCCATTCAGGTTCGTGAGGGTTCATTGTGCTGGAGCTCGTTC 1077
Query 1104 AGCAATCAGATTAGATATCTTTATTAC-AAAGTTAGATCTAATGGAACACTTGGTTATGG 1162
|||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |
Sbjct 1078 AGCAATCATATTAGATATCTTTATTACCAAA-TTAGATCTAATGGAACACTTGGTTATAG 1136
Query 1163 CGGTGTATCTACCATGAGTCCCAGCTATCAACCCCACAGTGGCAACGCACAGTCCAAGGT 1222
|||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1137 CGGTATATCTACCATGAATCCCAGCTATCAACCCCACAGTGGCAGCGCACAGTCCAAGGT 1196
Query 1223 TCCTCAACACTTAGGCGCAGTTTCAGTTGTCGTCTGTTTTACTGCTGTTCTGTTATCTCT 1282
|||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1197 TCCTCAACACTTGGGCGCGGTTGCAGTTGTCGTCTGTTTTACTGCTCTTCTGTTATCTCT 1256
Query 1283 TGGAATTTCCTTTGCGATTGTGCCTAGGCAAATCATGCCATGGACTGGCTTGGTCTTGGT 1342
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1257 TGGAATATCCTTTGCGATTGTGCCGAGGCAAATCATGCCATGGACTGGCTTGGTCTTGGT 1316
Query 1343 GTATGAATGGACTTTTACAATCTTCTTTCTTTTGTTTGGT-GTCTTCTTGCTTTTTGTGC 1401
|||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||
Sbjct 1317 GTATGAATGGACTTTTACAATCTTCTCTCTTTTGTTTGGTTG-CTTCTTGCTTTTTGTGC 1375
Query 1402 ATCAACATGGAAAGAGAATAGCGATACAATCAGAATCATCTTCCTTGGATGATTCCGCAA 1461
||| ||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1376 ATCTACATGGAAAGAAAATAGCAATACAATCAGAATCATCATCCTTGGATGATTCCGCAA 1435
Query 1462 AAGTTCATCAGCGAGCAGGTGGGTCTTGTGACGTTACTACATTGTATTATGGATTAGGGA 1521
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1436 AAGTTCATCAGCGAGCAGGTGTGTCTTGTGACGTTACTACATTGTATTATGGATTAGGGA 1495
Query 1522 TGGCTTTTCTGGCTATTGCTGCAGTTTCTTTACCTTACATTTTGGGGATCACTGCTTTAT 1581
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1496 TGGCTTTTTTGGCTATTGCTGCAGTTTCTTTACCTTACATTTTAGGGATCACTGCTTTAT 1555
Query 1582 TCACGAGGTTGGGTCTAATGGTGGGTCTAGCCATAATTCTAGCTGCCTTCATGACTTATG 1641
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1556 TCACGAGGTTGGGTCTAATGGTGGGTGTAGCCATAATTCTAGCTGCCTTCATGACTTATG 1615
Query 1642 CTTCAGAGCACCTCGCGGTGAGATGGTTCTTGAAAGGTCTAGAAGACCGTCGTGACACGA 1701
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1616 CTTCAGAGCACCTCGCGGTCAGATGGTTCTTGAAAGGTCTAGAAGACCGTCGCGACACGA 1675
Query 1702 CGAGATCAAATTCCCTATGTTTCCTCTGTTGACAACAAAATATGTAAAAGTGTCACCAAT 1761
| |||||||||||| ||||||||||||| |||| ||||| |||||||||||||| |
Sbjct 1676 CAAGATCAAATTCCTTATGTTTCCTCTGCTGACTGCAAAA---GTAAAAGTGTCACC--T 1730
Query 1762 CACCATTGTAACTTTCAGAAACAACAGAGCC--T--ATAATTCTGTCTTGAAATGGTTAC 1817
||||||||| |||||||||||||||| | ||||| |||||||||||||||||
Sbjct 1731 -----TTGTAACTTGCAGAAACAACAGAGCCAATCTATAATCCTGTCTTGAAATGGTTAA 1785
Query 1818 ACCTTTGTTCTTTCTTTGTC 1837
| ||||||||||||||||||
Sbjct 1786 AGCTTTGTTCTTTCTTTGTC 1805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68981433695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5