BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18480.1 Length=1837 Score E Sequences producing significant alignments: (Bits) Value Ahg488728 jgi|Araly1|488728|fgenesh2_kg.6__1862__AT5G18480.1 2772 0.0 > Ahg488728 jgi|Araly1|488728|fgenesh2_kg.6__1862__AT5G18480.1 Length=1805 Score = 2772 bits (1501), Expect = 0.0 Identities = 1718/1820 (94%), Gaps = 25/1820 (1%) Strand=Plus/Plus Query 28 AACGAAGAAAATTCAAAATCTTATTTCAATTCAACGTATACTTTCCTTAAATTAGGAATT 87 |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 1 AACGAAGAAATTTCAAAATC-TATTTCAATTCAACGTATACTTTCCTCAAATTAGGAATT 59 Query 88 TGGTTT-TCGAGAAAATTGAGATCCGAATAACTATGGTGAGACTCAAGACGAGTCTCTGG 146 | ||| || | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 T--TTTCTCCACAAAATTGAGATCCGAATAACTATGGTGAGACTCAAGACGAGTCTCTGG 117 Query 147 GTTCTTCTCCTTGCCCTCG-TT--TCAATTCAGTTAAATGGTTCGTTTGGATCTGAATCA 203 ||||||||||| || |||| || |||||||||||||| |||||||||||||||||| || Sbjct 118 GTTCTTCTCCTCGCGCTCGTTTCATCAATTCAGTTAAAGGGTTCGTTTGGATCTGAACCA 177 Query 204 AGTAAAGTAGCTTATGTCACACTTTTGTATGGAGATGAGTTCTTATTAGGAGTTAGGGTA 263 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 178 AGTAAAGTAGCTTATGTCACACTTTTGTATGGTGATGAGTTCTTATTGGGAGTTAGGGTA 237 Query 264 TTGGGTAAATCGATTCGTGACACTGGATCCACTAAGGATATGGTCGCTTTGGTTTCTGAT 323 ||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 238 TTGGGAAAATCGATTCGTGACACTGGATCCAAAAAAGATATGGTCGCTTTGGTTTCTGAT 297 Query 324 GGTGTCTCAGACTACTCTAAGAAGTTACTCAAGGCTGATGGATGGAAAGTAGAGAAGATT 383 |||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| Sbjct 298 GGTGTCTCAGACTACTCTAACAAGCTACTCAAGGCTGATGGATGGAAAGTTGAGAAGATT 357 Query 384 AGTTTACTGGCAAATCCAAATCAAGTTCATCCGACTAGGTTCTGGGGTGTTTATACAAAG 443 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 358 AGTTTACTGGCAAATCCAAATCAAGTTCATCCGACAAGGTTCTGGGGTGTTTATACAAAG 417 Query 444 CTTAAGATCTTTAACATGACTGATTATAAGAAAGTTGTGTATCTTGATGCTGATACTATT 503 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 418 CTTAAGATCTTTAACATGACTGATTACAAGAAAGTTGTGTATCTTGATGCTGATACTATT 477 Query 504 GTGGTAAAGAACATTGAGGATCTGTTTAAGTGTTCTAAGTTTTGCGCAAACTTGAAGCAT 563 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 478 GTGGTAAAGAACATTGAGGATCTGTTCAAGTGTTCCAAGTTTTGCGCAAACTTGAAGCAT 537 Query 564 TCTGAGAGGCTAAACTCTGGTGTGATGGTTGTTGAACCATCTGAAGCTCTTTTTAATGAC 623 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 538 TCTGAGAGGCTAAACTCTGGTGTCATGGTTGTTGAACCATCTGAAGCTCTTTTCAATGAT 597 Query 624 ATGATGCGGAAAGTGAAGACTTTGTCTTCTTATACTGGAGGAGATCAAGGGTTCTTGAAT 683 |||||||| ||||| ||||||||||| |||||||| |||||||| ||||||||||||||| Sbjct 598 ATGATGCGAAAAGTCAAGACTTTGTCATCTTATACCGGAGGAGACCAAGGGTTCTTGAAT 657 Query 684 TCGTATTATCCGGATTTCCCGAATGCTCGTGTTTTCGATCCTAGTGTAACTCCTGAAGTC 743 || || ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||| Sbjct 658 TCCTACTATCCAGATTTCCCAAATGCTCGTGTTTTCGATCCGAGTGTAACCCCTGAAGTC 717 Query 744 TTGAAAACCAGACCAGTTCCTGCTATGGAGAGGCTTTCGACATTATACAATGCGGATGTT 803 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 718 TTGAAAACCAGACCAGTTCCTGCTATGGAGAGGCTTTCTACATTATACAATGCGGATGTT 777 Query 804 GGTCTTTATATGCTTGCTAATAAGTGGATGGTTGATGACAGTAAACTTCACGTCATTCAC 863 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 778 GGTCTTTATATGCTTGCTAATAAGTGGATGGTTGATGACAGTAAACTTCACGTTATTCAC 837 Query 864 TACACTCTAGGCCCTCTTAAGCCTTGGGACTGGTGGACAGCATGGCTCGTGAAACCTGTT 923 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 838 TACACTCTAGGCCCTCTTAAGCCTTGGGACTGGTGGACAGCATGGCTTGTGAAACCTGTT 897 Query 924 GATGCTTGGCATAGCATTAGGGTAAAGCTTGAGGAAACTCTTCCTGGAACTGGAGGTGGT 983 ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 898 GATGCTTGGCAAAGCATTAGGGTAAAGCTTGAGGAAACTCTTCCTGCAACTGGAGGTGGC 957 Query 984 AGTAACCAACATGATGAACTCGTCGTCAAGTTCCTTTTCTTGTTACCTCTTTGTGCACTT 1043 | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 958 AAAAACCAACATGATGAACTCGTCGTCAAGTTCCTTTTCTTGTTACCTCTTTGTGGACTT 1017 Query 1044 TTGTTCTGCATTTACCGATCCATTCAGGGCCGTGAGGGTTCATTGTGCTGGAGCTCGTTC 1103 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1018 TTGTTCTGCATTTACCGATCCATTCAGGTTCGTGAGGGTTCATTGTGCTGGAGCTCGTTC 1077 Query 1104 AGCAATCAGATTAGATATCTTTATTAC-AAAGTTAGATCTAATGGAACACTTGGTTATGG 1162 |||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| | Sbjct 1078 AGCAATCATATTAGATATCTTTATTACCAAA-TTAGATCTAATGGAACACTTGGTTATAG 1136 Query 1163 CGGTGTATCTACCATGAGTCCCAGCTATCAACCCCACAGTGGCAACGCACAGTCCAAGGT 1222 |||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 1137 CGGTATATCTACCATGAATCCCAGCTATCAACCCCACAGTGGCAGCGCACAGTCCAAGGT 1196 Query 1223 TCCTCAACACTTAGGCGCAGTTTCAGTTGTCGTCTGTTTTACTGCTGTTCTGTTATCTCT 1282 |||||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||||||| Sbjct 1197 TCCTCAACACTTGGGCGCGGTTGCAGTTGTCGTCTGTTTTACTGCTCTTCTGTTATCTCT 1256 Query 1283 TGGAATTTCCTTTGCGATTGTGCCTAGGCAAATCATGCCATGGACTGGCTTGGTCTTGGT 1342 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1257 TGGAATATCCTTTGCGATTGTGCCGAGGCAAATCATGCCATGGACTGGCTTGGTCTTGGT 1316 Query 1343 GTATGAATGGACTTTTACAATCTTCTTTCTTTTGTTTGGT-GTCTTCTTGCTTTTTGTGC 1401 |||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||| Sbjct 1317 GTATGAATGGACTTTTACAATCTTCTCTCTTTTGTTTGGTTG-CTTCTTGCTTTTTGTGC 1375 Query 1402 ATCAACATGGAAAGAGAATAGCGATACAATCAGAATCATCTTCCTTGGATGATTCCGCAA 1461 ||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 1376 ATCTACATGGAAAGAAAATAGCAATACAATCAGAATCATCATCCTTGGATGATTCCGCAA 1435 Query 1462 AAGTTCATCAGCGAGCAGGTGGGTCTTGTGACGTTACTACATTGTATTATGGATTAGGGA 1521 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1436 AAGTTCATCAGCGAGCAGGTGTGTCTTGTGACGTTACTACATTGTATTATGGATTAGGGA 1495 Query 1522 TGGCTTTTCTGGCTATTGCTGCAGTTTCTTTACCTTACATTTTGGGGATCACTGCTTTAT 1581 |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1496 TGGCTTTTTTGGCTATTGCTGCAGTTTCTTTACCTTACATTTTAGGGATCACTGCTTTAT 1555 Query 1582 TCACGAGGTTGGGTCTAATGGTGGGTCTAGCCATAATTCTAGCTGCCTTCATGACTTATG 1641 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1556 TCACGAGGTTGGGTCTAATGGTGGGTGTAGCCATAATTCTAGCTGCCTTCATGACTTATG 1615 Query 1642 CTTCAGAGCACCTCGCGGTGAGATGGTTCTTGAAAGGTCTAGAAGACCGTCGTGACACGA 1701 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 1616 CTTCAGAGCACCTCGCGGTCAGATGGTTCTTGAAAGGTCTAGAAGACCGTCGCGACACGA 1675 Query 1702 CGAGATCAAATTCCCTATGTTTCCTCTGTTGACAACAAAATATGTAAAAGTGTCACCAAT 1761 | |||||||||||| ||||||||||||| |||| ||||| |||||||||||||| | Sbjct 1676 CAAGATCAAATTCCTTATGTTTCCTCTGCTGACTGCAAAA---GTAAAAGTGTCACC--T 1730 Query 1762 CACCATTGTAACTTTCAGAAACAACAGAGCC--T--ATAATTCTGTCTTGAAATGGTTAC 1817 ||||||||| |||||||||||||||| | ||||| ||||||||||||||||| Sbjct 1731 -----TTGTAACTTGCAGAAACAACAGAGCCAATCTATAATCCTGTCTTGAAATGGTTAA 1785 Query 1818 ACCTTTGTTCTTTCTTTGTC 1837 | |||||||||||||||||| Sbjct 1786 AGCTTTGTTCTTTCTTTGTC 1805 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68981433695 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5