BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18490.1
Length=1996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941373 jgi|Araly1|941373|scaffold_601917.1 2586 0.0
Ahg477694 jgi|Araly1|477694|fgenesh2_kg.3__395__AT3G04350.1 1037 0.0
> Ahg941373 jgi|Araly1|941373|scaffold_601917.1
Length=1703
Score = 2586 bits (1400), Expect = 0.0
Identities = 1601/1700 (94%), Gaps = 5/1700 (0%)
Strand=Plus/Plus
Query 196 TCTCGAAATCAAAACGATGTTTTGCGATTGCTTCTACTGGAATAAAGGTTTCTCCGAGTT 255
|||||||||| ||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 7 TCTCGAAATC-AAACGATGTTTTGCGATTGCTTCTACTGGAACAAATCAATCACCGAGTT 65
Query 256 GGAATCGGAATCGTCCGAGTCAAAGCCCTTCTCGCTTCCATCTCCTCTTCCTCAATGGCC 315
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 66 GGAATCGGAATCGTCCGAGTCAAAGCCCTTCTCGCTTCCGTCTCCTCTTCCTCGATGGCC 125
Query 316 ACAAGGCAGAGGTTTTGCTACTGGAAGGATAAGTCTTGGAGAAATCCAAGTGGTGAAAGT 375
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 126 ACAAGGCAGCGGTTTTGCTACTGGAAGGATAAATCTTGGAGAAATCCAAGTGGTGAAAGT 185
Query 376 CACCGAGTTCGATAGAGTTTGGAAATGTGGCACCTCGCGTGGTAAATTAAGATGCGCATC 435
|||||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||
Sbjct 186 CACCGAGTTCGATAGAGTTTGGAAATGTGGCAGGTCGCGTGGTAAATCGAGTTGCGCCTC 245
Query 436 TTTTTACAAACCTGTGGGGATACCAGAAGGTTTCCATTGCCTTGGTCATTACTGCCAGCC 495
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 TTTTTACAAGCCCGTGGGGATACCAGAAGGTTTCCATTGCCTTGGTCATTACTGCCAGCC 305
Query 496 AAACAATCAGCCATTGAGAGGCTTTGTTCTTGCAGCTCGGGCTAACAAGCCCGGTCATCT 555
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 306 AAACAATCAGCCATTGAGAGGCTTCGTTCTTGCAGCTCGGGCTAACGAGCCCGGTCATCT 365
Query 556 AGCGGATGATCATCGCCCTCCTTTGAAAAAGCCTTTGAATTATTCTTTAGTTTGGAGTTC 615
|||||||| ||||||||||| |||||||| ||| ||||||||||||||||||| |||||
Sbjct 366 TGCGGATGAGCATCGCCCTCCCTTGAAAAAACCTGTGAATTATTCTTTAGTTTGTAGTTC 425
Query 616 AGATTCAGATTGCTACTTCTGGTTACCTAATCCTCCTGTTGGTTATAGAGCCGTGGGAGT 675
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 426 AGATTCAGATTGCTACTTCTGGTTACCTAATCCTCCGGTTGGTTATAGAGCCGTGGGAGT 485
Query 676 TATTGTCACTGATGGATCAGAGGAGCCTGAAGTTGATGAAGTGAGATGTGTACGAGAGGA 735
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 486 TATTGTCACTGATGGATCAGAGGAGCCTGAAGTTGATGAAGTGAGATGTGTAAGAGAGGA 545
Query 736 TCTTACAGAGAGCTGTGAAACCGGTGAGAAGGTTCTTGGTGTAGGATCTTTTAATGTTTG 795
|||||| ||||| |||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct 546 TCTTACGGAGAGTTGTGAAACCGGTGAGAAGGTTCTTGGCATGGGATCTTTTAATGTCTG 605
Query 796 GAGCACTAAACCTTGCGAGA-GAGGTATTTGGTCTCGTGGAGTGGAGGTTGGGTCATTCG 854
|||||||||||| ||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 606 GAGCACTAAACCATGCGAGACG-GGTATTTGGTCTCGGGGAGTGGAGGTTGGGTCATTCT 664
Query 855 TTTGCTCTACTAATGATCTGTCTTCTGATAATAAAGCCGCCATGAACATTGCGTGTTTGA 914
||||||||||||||||| |||||||| || |||||||||||||||| |||||||||||||
Sbjct 665 TTTGCTCTACTAATGATATGTCTTCTAATTATAAAGCCGCCATGAAGATTGCGTGTTTGA 724
Query 915 AAAATCTCGACCCGAGCCTACAAGGTATGCCAAATCTTGATCAGGTCCATGCACTTATTC 974
|||||||||| ||||||||||| || |||||||||| ||| |||||||||||||||||||
Sbjct 725 AAAATCTCGATCCGAGCCTACATGGCATGCCAAATCCTGACCAGGTCCATGCACTTATTC 784
Query 975 ACCATTATGGACCGATGGTCTACTTCCATCCCGAAGAGACTTACATGCCTTCGTCTGTGC 1034
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 785 AGCATTATGGACCGATAGTCTACTTCCATCCCGAAGAGACTTACATGCCTTCGTCCGTGC 844
Query 1035 CATGGTTCTTTAAAAACGGAGCTTTGTTGCACCGGTTTGGGAAATCTCAAGGCGAACCGA 1094
||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||
Sbjct 845 CATGGTTCTTTAAAAACGGAGCTTTGTTGTACCGGTCTGGGAAATCGCAAGGCGAACCGA 904
Query 1095 TTAACTCA-GCTGGCTCGAACTTGCCTGCGGGTGGAGAAAACGATGGGAGCTTCTGGATT 1153
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 TTAACT-ATACTGGCTCGAACTTGCCTGCGGGTGGAGAAAACGATGGGAGCTTCTGGATT 963
Query 1154 GATCTCCCTGAAGATGAAGAAGTTAGAAGTAATCTAAAGAAGGGAAATATAGAAAGCTCA 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 GATCTCCCTGAAGATGAAGAAGTTAGAAGTAATCTAAAGAAGGGAAATATAGAAAGCTCA 1023
Query 1214 GAGCTTTACGTCCACGTGAAACCCGCGCTTGGCGGGATTTTCACGGACGTTGTAATGTGG 1273
|||||||| |||||||||||||| || ||||||||||||||||| ||| |||| ||||||
Sbjct 1024 GAGCTTTATGTCCACGTGAAACCAGCACTTGGCGGGATTTTCACAGACATTGTGATGTGG 1083
Query 1274 ATATTCTGTCCATTTAATGGTCCAGCCACTCTCAAAATCGGGCTTCTCACGGTACCAATG 1333
|| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 1084 ATTTTCTGTCCATTTAATGGCCCAGCCACTCTCAAAATCGGGCTTCTCACCGTACCCATG 1143
Query 1334 AACCGCCTTGGAGAGCATGTTGGTGATTGGGAACATTTCACATTCCGGATAAGCAACTTC 1393
|||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| |||
Sbjct 1144 AACCGCATTGGAGAGCATGTTGGTGATTGGGAACACTTCACATTCAGGATAAGCAATTTC 1203
Query 1394 AACGGCGATCTTACACAGATGTTCTTCTCACAGCATAGTGGTGGAGGATGGGTTGATGTA 1453
|||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1204 AACGGCGAGCTTACACAAATGTTCTTCTCACAACATAGCGGTGGAGGATGGGTTGATGTA 1263
Query 1454 TCGGATCTTGAGTTTGTCAAAGGAAGCAATAAACCGGTTGTGTACTCATCCAAACACGGT 1513
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1264 TCGGATCTTGAGTTTGTCAAAGGAAGCAACAAACCGGTTGTGTACTCATCCAAACACGGC 1323
Query 1514 CACGCTAGTTTCCCACACCCGGGAATGTATCTTCAAGGCCCGTCGAAGCTCGGGATTGGA 1573
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1324 CACGCGAGTTTCCCACACCCCGGAATGTACCTTCAAGGCCCGTCGAAGCTCGGGATTGGA 1383
Query 1574 GTAAGAAACGATGTTGCGAAAAGCAAGTATATGGTGGATTCTAGTCAAAGGTACAGAATC 1633
|| ||||||||||||||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 1384 GTGAGAAACGATGTTGCGAAAAGCAAGTATGCGGTGGATTCTAGTCAAAGATATAGAATC 1443
Query 1634 GTAGCAGCAGAGTATTTAGGCGAAGGAGCGGTTTCAGAACCGTACTGGCTGCAGTTTATG 1693
|| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1444 GTGGCAGCGGAGTATTTAGGCGAAGGAGCGGTTTCAGAACCGTGCTGGCTGCAGTTCATG 1503
Query 1694 AGAGAATGGGGACCAACTATAGTATATGATTCAGCAGCTGAGATCAATAAGATCATTGAT 1753
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 1504 AGAGAATGGGGACCAACTATAGTGTACGATTCTGCAGCTGAGATCAATAAGATCATTGAT 1563
Query 1754 CTACTTCCACTGATTCTGAGGAATTCTTTTGAGAGTCTGTTTCCTATTGAGCTTTACGGT 1813
|| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1564 CTTCTTCCATTGATTGTGAGGTATTCTTTTGAGAGTCTGTTTCCTATTGAGCTTTACGGC 1623
Query 1814 GAGGAAGGTCCTACAGGACCAAAGGAGAAGGATAATTGGGAAGGAGATGAAATTTGTTGA 1873
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1624 GAGGAAGGTCCTACAGGACCAAAGGAGAAGGATAATTGGGAAGGAGATGAAATGTGTTGA 1683
Query 1874 AAACAGAGCTCCTCTGTTTC 1893
||||||||||||||||||||
Sbjct 1684 AAACAGAGCTCCTCTGTTTC 1703
> Ahg477694 jgi|Araly1|477694|fgenesh2_kg.3__395__AT3G04350.1
Length=2219
Score = 1037 bits (561), Expect = 0.0
Identities = 1365/1736 (79%), Gaps = 123/1736 (7%)
Strand=Plus/Plus
Query 221 GATTGCTTCTACTGGAATAAAGGTTTCTCCGAGTTGGAATCGGAATCGTCCGAGTCAAAG 280
||||| || ||| ||| | ||| |||| | |||||| ||||||||||| ||| |||||
Sbjct 325 GATTGTTTTTACCGGAGCAGAGGACTCTCTGTGTTGGATTCGGAATCGTCTGAGCCAAAG 384
Query 281 CCCTTCTCGCTTCCATCTCCTCTTCCTCAAT-GGCCACAAGGCAGAGGTTTTGCTACTGG 339
||||||||||||||||||||||||||| | | |||||||||| | ||||||||| || ||
Sbjct 385 CCCTTCTCGCTTCCATCTCCTCTTCCT-AGTTGGCCACAAGGTAAAGGTTTTGCCACGGG 443
Query 340 AAGGATAAGTCTT-GGAGAAATCCAAGTGGTGAAAGTCACCGAGTTCGATAGAGTTTGGA 398
||| |||| ||| |||||||| ||||||||||| ||||| ||||| ||||||||||||
Sbjct 444 AAGAATAAA-CTTAGGAGAAATAGAAGTGGTGAAAATCACCAAGTTCCATAGAGTTTGGA 502
Query 399 AATGTGGCACCTCGCGTGGTAAATTAAGATGCGCATCTTTTTACAAA-CCTGTGGGGATA 457
| || | |||| || |||| || ||| ||| | ||||||| | || | || ||
Sbjct 503 GCTCTGATTCATCGCACGGCAAATCAAAATGTGCAACATTTTACAGAGCC-GAGGAAATT 561
Query 458 CCAGAAGGTTTCCATTGCCTTGGTCATTACTGCCAGCCAAACAATCAGCCATTGAGAGGC 517
|||||||||||||||||| ||||||| || ||||| |||| | ||||||| ||||||||
Sbjct 562 CCAGAAGGTTTCCATTGCTTTGGTCACTATTGCCAACCAACCGATCAGCCCTTGAGAGG- 620
Query 518 TT-TGTTCTTGCAGCTCGGGCTAACAA-GCCCGGTCATCTAGCGGATGATCATCGC-CCT 574
|| ||| |||||||||||| ||| ||| ||| | ||| | || ||||||| || | ||
Sbjct 621 TTATGTACTTGCAGCTCGGTCTAGCAAAGCC-G-TCAA-T-GCTGATGATC-TCCCACC- 674
Query 575 CCTTTGAAAAAGCCTTTGAATTATTCTTTAGTTTGGAGTTCAGATTCAGA------T--- 625
||| |||||||||| ||| ||||||||||||||||||| |||||||||| |
Sbjct 675 CCT--GAAAAAGCCTGTGAGTTATTCTTTAGTTTGGAGTGCAGATTCAGAGAAAAATGGC 732
Query 626 --TG-CTACTTCTGGTTACCTAATCCTCCTGTTGGTTATAGAGCCGTGGGAGTTATTGTC 682
|| ||| |||||| ||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 733 AGTGGCTATTTCTGGCTACCTAATCCTCCGGTTGGTTACAGAGCAATGGGAGTTATTGTA 792
Query 683 ACTGATGGATCAGAG-GAGCCTGAAGTTGATGAAGTGAGATGTGTACGAGAGGATCTTAC 741
|| |||| ||| | || |||||| || || || ||||||||| |||||||||| ||
Sbjct 793 ACCCCTGGACCAG-GTGAACCTGAACCAGAGGAGGTTAGATGTGTAAGAGAGGATCTCAC 851
Query 742 AGAGAGCTGTGAAACC---G-G-TGAGA----AGGT---T-CTT-G--G--T--GTA-GG 780
|||||| ||||||||| | | ||| | |||| | ||| | | | | | ||
Sbjct 852 AGAGAGTTGTGAAACCTCTGAGATGATACTTGAGGTGGGTTCTTCGAAGAATTCGAACGG 911
Query 781 ----A-T-CT--TTTAA-TGTTTGGAGCACTAAACCTTGCGAGAGAGGTATT-TGGTCTC 830
| | || ||| | ||| |||||||| ||||||||||||||| || || || |
Sbjct 912 CTCTAGTTCTCCTTTTAGTGTGTGGAGCACCCGACCTTGCGAGAGAGGGATGCTG-TCAC 970
Query 831 GTGGAGTGGAGGTTGGGTCATTCGTTTGCT-CTACTAATGATCTGTCTTCTGATAATAAA 889
|| || | |||||||||||| |||||| | ||| |||||||||||||||||| |
Sbjct 971 AAGGTGTAGCTGTTGGGTCATTCTTTTGCTGC-ACTTATGATCTGTCTTCTGATAGGACG 1029
Query 890 GCCGCCATGAACATTGCG-TGTTTGAAA-AATCTCGACCCGAGCCT-ACAAG-GTATGCC 945
| | || ||| |||| | || || ||| ||||| || |||| ||| ||| | | |||||
Sbjct 1030 GTC-CC-TGAT-ATTG-GATGCTT-AAAGAATCTTGATCCGA-CCTTACACGCG-ATGCC 1082
Query 946 AAATCTTGATCAGGTCCATGCACTTATTCACCA-TTATGGACCGATGGTCTACTTCCATC 1004
|||||| || ||||||||||| ||||| | || || ||||| | ||||||||||| |
Sbjct 1083 AAATCTCGACCAGGTCCATGCGGTTATTGAACACTTC-GGACCAACAGTCTACTTCCA-C 1140
Query 1005 CC-GAAGAGACTTACATGCCTTCGTCTGTGCCATGGTTCTTTAAAAACGGAGCTTTGTTG 1063
|| |||||| ||||||||||||| || || | |||||||||||| || ||||||||||||
Sbjct 1141 CCAGAAGAGGCTTACATGCCTTCATCCGTACAATGGTTCTTTAAGAATGGAGCTTTGTTG 1200
Query 1064 CACCGGTTTGGGAAATCTCAAGG-CGAACCGATTAACTC-AGCTGGCTCGAACTTGCCTG 1121
|||||| |||||||| ||||| | ||||||||||||| | | ||||||||||||||||
Sbjct 1201 TACCGGTCAGGGAAATCACAAGGTC-AACCGATTAACTCCA-CGGGCTCGAACTTGCCTG 1258
Query 1122 CGGGTGGA-GAAAACGATG-GGAGCTTCTGGATTGATCT-CCCTGAAGATGAAGAAGTTA 1178
| || ||| | || ||| ||| |||||||| ||||| ||| ||||| ||||||| |
Sbjct 1259 CTGGAGGATGCAAT-GATATGGAA-TTCTGGATAGATCTTCCC-GAAGACGAAGAAGCAA 1315
Query 1179 -GAAGTAATCTAAAGAAGGGAAATATAGAAAGCTCAGAGCTTTACGTCCACGTGAAACCC 1237
|| ||||||| ||||| ||||| | |||||||| ||||||||||| || ||||||||
Sbjct 1316 AGA-GTAATCTCAAGAAAGGAAACCTTGAAAGCTCGGAGCTTTACGTTCATGTGAAACCA 1374
Query 1238 GCGCTTGGCGGGAT-TTTCACGGACGTTGTAATGTGGATATTCTGTCCATTTAATGGTCC 1296
|| ||||| || | ||| || ||| |||| |||||||| ||||| || |||||||| ||
Sbjct 1375 GCACTTGGTGGAACCTTT-ACCGACATTGTGATGTGGATTTTCTGCCCCTTTAATGGCCC 1433
Query 1297 AGCCACTCTCAAAATCGGGCT-TCTCACGGTACCAATGAACCGCCTTGGAGAGCATGTTG 1355
||||| |||||||||||||| | ||||| |||| |||| |||| | ||||| ||||| |
Sbjct 1434 GGCCACGCTCAAAATCGGGCTAT-TCACGTTACCTATGACCCGCATAGGAGAACATGTCG 1492
Query 1356 GTGATTGGGAACATTTCACATTCCGGATAAGCAACTTCAAC-GGCGATCTTACACAGATG 1414
||||||||||||||||||| ||||| ||| |||||||| | || || ||| || |||
Sbjct 1493 GTGATTGGGAACATTTCACTTTCCGCATATGCAACTTCT-CTGGTGAGCTTTGGCAAATG 1551
Query 1415 TTCTTCTCACAGCATAGTGGTGGAGGATGGGTTGATGTATCGGATCTTGAGTTTGTCAAA 1474
|| ||||| |||||||||||||| || |||||||||| ||| ||| |||||||||| |||
Sbjct 1552 TTTTTCTCTCAGCATAGTGGTGGTGGTTGGGTTGATGCATCAGATATTGAGTTTGTGAAA 1611
Query 1475 GGAAGCAATAAACCGGTTGTGTACTCATCCAAACACGGTCACGCTAGTTTCCCACACCCG 1534
| | || ||||||| |||||||||||| |||||||| || || |||||||| ||||||
Sbjct 1612 G-AT--AACAAACCGGCTGTGTACTCATCTAAACACGGACATGCGAGTTTCCCTCACCCG 1668
Query 1535 GGAATGTATCTTCAAGGCCCGTCGAAGCTCGGGATTGGAGTAAGAAACGATGTTGCGAAA 1594
|||||||| || |||||| |||| ||||||||||||||||| |||||||||||||| |||
Sbjct 1669 GGAATGTACCTCCAAGGCTCGTCAAAGCTCGGGATTGGAGTCAGAAACGATGTTGCAAAA 1728
Query 1595 AGCAAGTATATGGTGGATTCTAGTCAAAGGTACA-GAATCGTAGCAGCAGAGTATTTAGG 1653
|||||||| || |||||||| || |||||||| || | |||||||| |||||||||||
Sbjct 1729 AGCAAGTACATTGTGGATTCAAGCCAAAGGTATGTGATT-GTAGCAGCTGAGTATTTAGG 1787
Query 1654 CGAAGGAGCGGTT-TCAGAACCGTACTGGCTGCAGTTTATGAGAGAATGGGGACCAACTA 1712
||||||| || | ||| |||| |||| | |||| |||||| |||||||| || || |
Sbjct 1788 TAAAGGAGCTGTGAT-AGAGCCGTGCTGGTTACAGTATATGAGGGAATGGGGTCCGACCA 1846
Query 1713 TAGTATATGATTCAGCAG-CTGAGATCAATAAGATCATTGA-TCTACTTCCACTGATTCT 1770
| | ||||||||| | | ||||||||||||||||||| || ||| ||||| || || |
Sbjct 1847 TTGCATATGATTCGGG-GTCTGAGATCAATAAGATCAT-GAATCTTCTTCCTTTGGTTGT 1904
Query 1771 GAGGAATTCT-T-TTGAGA-----GTC--T--GTTTCCTATTGAGCTTTACGGTGAGGAA 1819
||| |||| | |||||| || | |||||| |||| ||||| || || |||
Sbjct 1905 TAGG--TTCTCTATTGAGAACATTGTTGATTTGTTTCCCATTGCTCTTTATGGAGAAGAA 1962
Query 1820 GGTCCTACAGGACCAAAGGAGAAGGATAATTGGGAAGGAGATGAAATTTGTTGAAA 1875
|||||||| || ||||||||||| ||||| |||||||||||||| || || |||||
Sbjct 1963 GGTCCTACGGGGCCAAAGGAGAAAGATAACTGGGAAGGAGATGAGATGTGCTGAAA 2018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75037782650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5