BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18500.1
Length=2007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941374 jgi|Araly1|941374|scaffold_601918.1 2453 0.0
Ahg937473 jgi|Araly1|937473|scaffold_501664.1 115 1e-24
Ahg932794 jgi|Araly1|932794|scaffold_400782.1 115 1e-24
Ahg932909 jgi|Araly1|932909|scaffold_400897.1 110 6e-23
> Ahg941374 jgi|Araly1|941374|scaffold_601918.1
Length=1496
Score = 2453 bits (1328), Expect = 0.0
Identities = 1440/1496 (96%), Gaps = 0/1496 (0%)
Strand=Plus/Plus
Query 186 AATAAAGCGGAGGTCAGAAGATGGGTTCTGGTTTAAATGACACATTATCTCGGAACTACA 245
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 AATAAAGCGGAGGTCATAAGATGGGTTCTGGTTTAAACGACACATTATCTCGGAACTACA 60
Query 246 ATGGTTTGGAGCTATGGGAGATAATAGTGATTGTTCTCTCCGCGATATTCGTTGTAGTTT 305
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 ATGGTTTGGAGCTATGGGAGATAATAGTGATCGTTCTCTCCGCGATATTCGTTGTAGTTT 120
Query 306 TAGCTATATCGCTATGGCTTACTTTCAGAAGAAAAACCTCTAGATCTTCTTCTAATCTAA 365
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TAGCTATATCGCTTTGGCTTACTTTCAGGAGAAAAACCTCTAGATCTTCTTCTAATCTAA 180
Query 366 TCCCTGTTAGTCGCCAGATTCCTCCTAGTGTTCCTGAAGAGATTAAAGAGATTAGAGTCG 425
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
Sbjct 181 TCCCTGTTAGTCGCCAGGTTCCTCCTAGTGTTCCTGAAGAGATAAAAGAGATTAGAGTTG 240
Query 426 ACGAGGTTTCTTCAAGCAATGGTGGGAATGGATACCCCTCTATTAGTGAGAAATTTGGCG 485
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 241 ACGAGGTTTCTTCAAGCAATGGTGGCAATGGATATCCCTCTATTAGTGAGAAATTTGGCG 300
Query 486 ATAAAGAACCCGAAAAAGGGATAAAAGCAGAGTCAGAAAATGGCGATAGTAGCCGGTCAG 545
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 ATAAAGAACCTGAAAAGGGGATAAAAGCAGAGTCAGAAAATGGCGATAGTAGCCGGTCTG 360
Query 546 GCTCGTTTAATCACTTGGAGAAAAAAGACGGATCGAGCGTATCTTCTGCTAATCCTTTGA 605
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 361 GCTCGTTTAATCACTTGGAGAAAAAAGATGGATCAAGCGTATCTTCTGCTAATCCTTTGA 420
Query 606 CAGCTCCATCTCCTTTGTCTGGTCTTCCTGAGTTTTCTCACCTTGGATGGGGACATTGGT 665
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 421 CAGCTCCATCTCCTTTGTCTGGCCTTCCTGAGTTTTCTCACCTCGGATGGGGACATTGGT 480
Query 666 TCACTCTTAGAGATCTTCAGATGGCTACTAATCAGTTTTCAAGGGATAATATCATCGGTG 725
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 481 TCACTCTTAGAGATCTTCAGATGGCTACTAATCAGTTTTCGAGGGATAATATAATCGGTG 540
Query 726 ATGGTGGATATGGAGTTGTTTACCGCGGTAACCTTGTTAATGGTACTCCTGTTGCTGTTA 785
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 541 ATGGTGGATATGGAGTTGTTTATCGTGGTAACCTTGTTAATGGTACTCCTGTTGCTGTTA 600
Query 786 AAAAGTTGCTCAACAATTTAGGACAAGCTGATAAAGACTTCAGAGTTGAAGTTGAAGCTA 845
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 601 AAAAGTTGCTCAACAATTTAGGGCAAGCTGACAAAGACTTCAGAGTAGAAGTTGAAGCTA 660
Query 846 TAGGTCACGTTCGACATAAAAACTTGGTCCGCCTTCTCGGATATTGTATGGAAGGAACGC 905
||||||| ||||| || ||||| ||||| |||||||| |||||||| ||||||||||| |
Sbjct 661 TAGGTCATGTTCGCCACAAAAATTTGGTGCGCCTTCTTGGATATTGCATGGAAGGAACAC 720
Query 906 AGAGGATGCTGGTGTATGAGTATGTTAACAATGGAAATTTGGAGCAATGGCTCCGTGGAG 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGAGGATGCTGGTGTATGAGTATGTTAACAATGGAAATTTGGAGCAATGGCTCCGTGGAG 780
Query 966 ACAATCAAAATCATGAGTATCTTACATGGGAGGCACGAGTGAAAATTCTTATTGGGACAG 1025
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 781 ACAATCAAAACCATGAGTATCTTACATGGGAGGCACGAGTGAAAATTCTTATTGGAACAG 840
Query 1026 CCAAAGCGCTCGCGTACCTTCACGAGGCGATTGAGCCAAAAGTGGTGCACAGAGACATTA 1085
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCAAAGCGCTCGCGTATCTTCACGAGGCGATTGAGCCAAAAGTGGTGCACAGAGACATTA 900
Query 1086 AGTCTAGTAACATTCTGATTGATGACAAATTCAATTCTAAAATTTCTGACTTTGGACTTG 1145
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGTCTAGCAACATTCTGATTGATGACAAATTCAATTCTAAAATTTCTGACTTTGGACTTG 960
Query 1146 CTAAACTACTTGGTGCTGATAAGAGTTTTATAACTACTAGAGTTATGGGTACCTTCGGTT 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 961 CTAAACTACTTGGTGCTGATAAGAGTTTTATAACTACTAGAGTTATGGGTACCTTTGGTT 1020
Query 1206 ACGTAGCTCCAGAGTATGCGAATTCCGGTCTTCTGAATGAGAAAAGCGATGTCTACAGCT 1265
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1021 ATGTAGCTCCAGAGTATGCGAATTCCGGTCTTCTGAATGAGAAAAGTGATGTCTACAGCT 1080
Query 1266 TCGGGGTTGTACTCTTGGAAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCAC 1325
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1081 TCGGGGTTGTACTCTTGGAAGCTATAACTGGTAGATATCCGGTAGATTATGCTCGTCCAC 1140
Query 1326 CACCCGAGGTACATTTGGTGGAGTGGCTGAAGATGATGGTCCAACAAAGACGATCAGAAG 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CACCCGAGGTACATTTGGTGGAGTGGCTGAAGATGATGGTCCAACAAAGACGATCAGAAG 1200
Query 1386 AAGTGGTTGATCCAAACCTTGAAACAAAACCATCTACAAGTGCTTTGAAAAGAACACTAT 1445
||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1201 AAGTGATTGACCCAAACCTTGAAACAAAACCATCTACAAGTGCTTTAAAAAGAACACTCT 1260
Query 1446 TGACTGCTTTGAGATGTGTTGATCCAATGTCTGAGAAAAGACCGAGGATGAGCCAAGTTG 1505
|||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1261 TGACTGCTCTAAGATGTGTTGATCCAATGTCTGAGAAACGACCAAGGATGAGCCAAGTTG 1320
Query 1506 CACGTATGCTTGAATCCGAAGAATACCCAATTGCTAGAGAGGATAGGAGAAGACGAAGGA 1565
| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1321 CCCGTATGCTTGAATCCGAAGAATACCCAATTCCTAGAGAGGATAGGAGAAGAAGAAGGG 1380
Query 1566 GTCAGAACGGGACAACAAGAGATTCAGATCCTCCGAGGAACAGCACAGACACTGACAAGA 1625
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1381 GTCAGAACGGGACAACAAGAGATTCAGATCCTCCTAGGAACAGCACAGACACTGACAAGA 1440
Query 1626 GTGAGTACCATGACCTAAAGCCTGAAGGTGGATAGCCATTGGAAATAATGGAGGTG 1681
||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct 1441 GTGAGTACCATGACCTAAAGCCTGAAGGTGGGTAGCCACTGGAAATAATCGAGGTG 1496
> Ahg937473 jgi|Araly1|937473|scaffold_501664.1
Length=449
Score = 115 bits (62), Expect = 1e-24
Identities = 64/65 (98%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1070 GTGCACAGAGACATTAAGTCTAGTAACATTCTGATTGATGACAAATTCAATTCTAAAATT 1129
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 GTGCACAGAGACATTAAGTCTAGCAACATTCTGATTGATGACAAATTCAATTCTAAAATT 420
Query 1130 TCTGA 1134
|||||
Sbjct 421 TCTGA 425
> Ahg932794 jgi|Araly1|932794|scaffold_400782.1
Length=829
Score = 115 bits (62), Expect = 1e-24
Identities = 64/65 (98%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1070 GTGCACAGAGACATTAAGTCTAGTAACATTCTGATTGATGACAAATTCAATTCTAAAATT 1129
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 741 GTGCACAGAGACATTAAGTCTAGCAACATTCTGATTGATGACAAATTCAATTCTAAAATT 800
Query 1130 TCTGA 1134
|||||
Sbjct 801 TCTGA 805
> Ahg932909 jgi|Araly1|932909|scaffold_400897.1
Length=962
Score = 110 bits (59), Expect = 6e-23
Identities = 63/65 (97%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1070 GTGCACAGAGACATTAAGTCTAGTAACATTCTGATTGATGACAAATTCAATTCTAAAATT 1129
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 874 GTGCACAGAGACATTAAGTCTAGCAACATTCTGATTGATGACAAATTCAATTCTAAAATT 933
Query 1130 TCTGA 1134
| |||
Sbjct 934 TTTGA 938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75456775345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5