BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18510.1
Length=2109
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326260 jgi|Araly1|326260|fgenesh1_pm.C_scaffold_6001480 2143 0.0
Ahg337228 jgi|Araly1|337228|fgenesh1_pg.C_scaffold_1003793 503 2e-141
> Ahg326260 jgi|Araly1|326260|fgenesh1_pm.C_scaffold_6001480
Length=1665
Score = 2143 bits (1160), Expect = 0.0
Identities = 1516/1684 (90%), Gaps = 39/1684 (2%)
Strand=Plus/Plus
Query 442 ATGAGAGATTCCGCAGAGAAACTTGAAAAAGTAAGACGAGACAGTCTTGGCAAGGCTAAG 501
||||||| ||||||||||||||| || |||||||||||||||||| ||||||||||||||
Sbjct 1 ATGAGAGCTTCCGCAGAGAAACTGGAGAAAGTAAGACGAGACAGTGTTGGCAAGGCTAAG 60
Query 502 CGAGTGAGCCAAAGATCATGGACTTCGAGCTTCATGGGTAGAGGTGGTCAGATGGAGCAT 561
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CGAGTGAGCCAAAGATCATGGACTTCGAGTTTCATGGGTAGAGGTGGTCAGATGGAGCAT 120
Query 562 GAAGCTTTTCTTGTATTGTGGCTTTCACTTTTTGTTTTTCCAGGTAAATTTTGTCGTTCT 621
|||||||||||||||||||||||||| |||||||||||||||||| | | |||||||||
Sbjct 121 GAAGCTTTTCTTGTATTGTGGCTTTCGCTTTTTGTTTTTCCAGGTGACTGCTGTCGTTCT 180
Query 622 ATATCGACAAACGTAATCCCTATAGCTGTTCGTTTAGCTAGAGGTGAAAGAATTGCTCTT 681
||||| | ||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 181 ATATCTAGAAATGTAATCCCTATCGCTGTTCGTTTAGCTAGCGGTGAAAGGATTGCTCTT 240
Query 682 GCGCCTGCTGTTCTCGCATTCCTGTACAAAGATTTGGATCGAATCTGTGATTTCTCTAGA 741
|||||| |||||||||||||||| ||||||||||||| ||||||| | |||||
Sbjct 241 GCGCCTACTGTTCTCGCATTCCTATACAAAGATTTGGGTCGAATC---G------CTAGA 291
Query 742 GGAAAATGTGCTGGCAAAGTTAATTTGAAGTCTCTGTTTAAGTTAGTCCAAGTTTGGACT 801
|||||||||||||| ||||||| |||||||||| ||||||||||||| |||||||||||
Sbjct 292 GGAAAATGTGCTGGGAAAGTTAGTTTGAAGTCTTTGTTTAAGTTAGTACAAGTTTGGACA 351
Query 802 TGGGAGAGATTCAGTAACATAAGACCAAAAGCTAAAGAGATACCTAAAGGTGAACCTAGA 861
|||||||||||||| ||||| |||||||| ||||||| ||||| ||||||||| |||
Sbjct 352 TGGGAGAGATTCAGGAACATCGGACCAAAACCTAAAGATATACCCGTAGGTGAACCAAGA 411
Query 862 ATAGCTCAGTGGGATGGTCTGCA-ACAAATATCTAAGAATGTGAAACTG-AGTTTTGATG 919
|||||||||||||| |||| || ||||| |||||||||||||| | || | ||||||||
Sbjct 412 ATAGCTCAGTGGGACAGTCT-CATACAAAGATCTAAGAATGTGAGATTGTA-TTTTGATG 469
Query 920 -TTTTCGAGTGGCGTCCTTACACTAAACCGTTGAAGAACTGGAACCCACTTCGGTTTTAC 978
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 ATTTT-GACTGGCGTCCTTACACTAAACCGTTGAAGAACTGGAACCCACTTCGGTTTTAC 528
Query 979 GTTGATGAAGCTATGTGGCTGACTGTTGATGACAGTGTTGATGATGCATTTGCTTCTTTT 1038
||||| |||||||||||| ||||||||||||||| ||||||||||| |||||||||||||
Sbjct 529 GTTGAAGAAGCTATGTGGGTGACTGTTGATGACAATGTTGATGATGAATTTGCTTCTTTT 588
Query 1039 GCTCGATGTGTGAAAGTTTCATACCTTGCTGGAAATGGTTTTGTTGAAGATTACTTCCCT 1098
||||||||||||||||||||||||||||||||||| |||||||| || | |||||||||
Sbjct 589 GCTCGATGTGTGAAAGTTTCATACCTTGCTGGAAAAGGTTTTGTAGAGGCTTACTTCCCG 648
Query 1099 TATCGAGTGGCGAGGCAGTTCGGTTTGTCTCAAGATCTTCCTGGTTTGGTTACTCGTCGT 1158
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 649 CATCGAGTGGCGAGGCAGTTTGGTTTGGCTCAAGATCTTCCTGGTTTGGTTACTCGTCGT 708
Query 1159 AGAAAAATCACAGAAAAGGATGCTTGGGATGATTACAGTAATTCTCTTGAGGGTTTAAAT 1218
|||||| ||||||||||||| |||||||||||||||||||| ||| |||| ||| ||||
Sbjct 709 AGAAAATTCACAGAAAAGGAGGCTTGGGATGATTACAGTAAGTCTGTTGATGGTCTAAAG 768
Query 1219 CTCTACTTGCCTTCTCAACTTGATCGAGGTTATGTCACTGCCAGGTACCAAGACTGGTGG 1278
|||||| ||||||| | |||||||||||||| ||| || ||||| |||||||||||||||
Sbjct 769 CTCTACATGCCTTCACGACTTGATCGAGGTTCTGTGACAGCCAGATACCAAGACTGGTGG 828
Query 1279 TTTAAATCAGCTTCAGAATATT-TTGGTTCTGAAGAGATACAGAAAGAATCGACTGAAGC 1337
|| ||||||| |||||| | || |||||||||||||||| ||||||||||||||||||||
Sbjct 829 TTGAAATCAGTTTCAGACT-TTCTTGGTTCTGAAGAGATGCAGAAAGAATCGACTGAAGC 887
Query 1338 TTTTGATGCAAGGAATACATTTGATCATCTTGATAAAGATGATGATGATGGTGATATTGA 1397
|| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct 888 TTCTGATGCAAGGAATACATTTGATCATCTTGGTAAAGATGGTGATGATGGTGATATTCA 947
Query 1398 TGTATCTACCAAGGTACCTCCTTTGAGTCAAGTAGTTCAGAAGTTGGAAGAAGGCTTTAC 1457
||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| ||| |
Sbjct 948 TGTATCTCCCAAGGTACTTCCTTTGAGTCAAGTAGTTCAGAAGTTGGAAAAAGGATTTCC 1007
Query 1458 TGCAAAACGCAGAATATCGAGGATGCATAGATCAGCAAAGAGATATAAGATAACTGAGTC 1517
|||||||||||||| |||||||| |||||| | | ||||||||||||||||| |||||||
Sbjct 1008 TGCAAAACGCAGAAGATCGAGGAAGCATAGGTTACCAAAGAGATATAAGATATCTGAGTC 1067
Query 1518 TGATGTTCACATGAAGCGAGCTCGTGAGGCTGATGCTGAGATTTCTACGGATAAAGAAGA 1577
| || || ||||||||||||||||||| |||| ||||| ||||||||||||||||||
Sbjct 1068 TC-TG--CAGATGAAGCGAGCTCGTGAGGATGATTATGAGAGTTCTACGGATAAAGAAGA 1124
Query 1578 TGACTGCATGACCGTTGCTCAATTGATCAGATCTAGGAATAAGTACTTTAGTGATGTAGA 1637
||| ||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct 1125 TGATTGCATGACCGTTGCTCAATTGATCAGATCTAGGAACAAGT--TT-AGTGATGTAGA 1181
Query 1638 -----C---A-AGAAAACTGGAGGTGATGCTTCTGAATCACTTGGAAAAAGAAGTAGAAG 1688
| | |||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1182 GAAAACTGGAGAGAAAACTGGAGGTGATGCTTCTGAATCACTTAGAAAAAGAACTAGAAG 1241
Query 1689 ATATATGCTGGTGGATAGCGATGATGATTCAGGGCCTTGTCAAAAGCATGCTTTAATGAA 1748
||||||| | |||||||||||||||||||||||| ||||| |||||||||||| ||| |
Sbjct 1242 ATATATGGTAGTGGATAGCGATGATGATTCAGGGTCTTGTGAAAAGCATGCTTGGATGGA 1301
Query 1749 AGTAGAGCAAAGAAGTGTAGAGGATGATGGAACTACCaaaaaaaCAGAGATTACAAGGCA 1808
|||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1302 AGTAGATCAAAGGAGTGTAGAGGATGATGGAACTGCCAATAAAACAGAGATTACAAGGCA 1361
Query 1809 AACATGTGATGATGTAAATGGAAGTGATGCAGAGAAGAAGGCAATAATCAATGATGGAAT 1868
|||||||||| |||||||||||||| ||| ||||| ||||||||| ||| |||||| |||
Sbjct 1362 AACATGTGATTATGTAAATGGAAGTTATGGAGAGAGGAAGGCAATGATCGATGATGCAAT 1421
Query 1869 CAAGGAGGCAGATTCTTGGCTACTTGAAGATAGAGAAATTGA-GAGGAGATGCATTGGAA 1927
|||||| ||||| |||||||||| ||||||||||||||| || || ||||||||||||||
Sbjct 1422 CAAGGAAGCAGAGTCTTGGCTACATGAAGATAGAGAAAT-GAAGAAGAGATGCATTGGAA 1480
Query 1928 AGTTTTGCAGTGAAGTTAAAAAGGAAGAAGATGTTGATGAAAGATTGAGGCAGAGAACGC 1987
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1481 AGCTTTCCAGTGAAGTTAAAAAGGAAGAAGATGTTGATGAAAGATTGAGGCAGAAAAATC 1540
Query 1988 TTGCAATAGAGAAGATGGCACTGGAGCTGGAGACACGTCTTAGT-AAGATGGAGAAGAGT 2046
|||||||||||||||| ||| ||||||||||||||||| ||| | || ||||||| ||||
Sbjct 1541 TTGCAATAGAGAAGATAGCATTGGAGCTGGAGACACGTATTA-TCAAAATGGAGACGAGT 1599
Query 2047 TTGGCAGAGATTAGAAAATGGAAAACCAGAGGAAACCAGACCAAAAAT-GGTTTTTCTGC 2105
|||||||||| |||||||||||||||||||||||||||| ||||| || ||||| ||||
Sbjct 1600 TTGGCAGAGAATAGAAAATGGAAAACCAGAGGAAACCAGTCCAAACATCGGTTT--CTGC 1657
Query 2106 TTAG 2109
||||
Sbjct 1658 TTAG 1661
> Ahg337228 jgi|Araly1|337228|fgenesh1_pg.C_scaffold_1003793
Length=1473
Score = 503 bits (272), Expect = 2e-141
Identities = 475/570 (83%), Gaps = 26/570 (5%)
Strand=Plus/Plus
Query 949 TTGAAGAACTGGAACCCACTTCGGTTTTACGTTGATGAAGCTATGTGGCTGACTGTTGAT 1008
|||||||| ||||| || ||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 556 TTGAAGAATTGGAAACCTCTTCGGTTTTATGTTGAAGAAGCTATGTGGGTGACTGTTGAT 615
Query 1009 GACAGTGTTGATGATGCA-TTTGCTTCTTTTGCTCGATGTGTGAAAGTTTCAT-ACCTTG 1066
|| ||| ||||||||| | ||||||| |||||| ||||||||| |||||| | | ||||
Sbjct 616 GAGAGTATTGATGATG-AGTTTGCTTATTTTGCAAGATGTGTGAGAGTTTC-TCAGCTTG 673
Query 1067 CTGGAAATGGTTTTGTTGAA-GATTACTTCCCTTATCGAGTGGCGAGGCAGTTCGGTTTG 1125
||||||||||||||| | || ||||||||||| || ||||||||| |||||| ||||||
Sbjct 674 CTGGAAATGGTTTTG-TAAAGGATTACTTCCCGAATAGAGTGGCGATGCAGTTTGGTTTG 732
Query 1126 TCTCAAGATCTTCCTGGTTTGGTTACTCGTCGTAGAAAAATCACAGAAAAGGATGCTTGG 1185
|||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 733 GCTCAAGATCTTCCTGGTTTGGTTACTCGTCATAGAATCTTCACAGAAAAGGAGGCTTGG 792
Query 1186 GATGATTACAGTAATTCTCTTGAGGGTTTAAATCTCTACTTGCCTTCTCAACTTGATCGA 1245
| || |||||||| ||| |||| |||||||| |||||| ||||||||| |||||||||
Sbjct 793 GGCGAGTACAGTAAGTCTTTTGATGGTTTAAAGCTCTACATGCCTTCTCGCCTTGATCGA 852
Query 1246 GGTTATGTCACTGCCAGGTACCAAGACTGGTGGTTTAAATCAGCTTCAGAA-TATT-TTG 1303
|||| ||||||| | || |||| || ||||||| ||||||| |||| || | || |||
Sbjct 853 GGTTCTGTCACTTCGAGATACCGAGTCTGGTGGCGGAAATCAGTTTCA-AAGT-TTCTTG 910
Query 1304 GTTCTGAAGAGATACAGAAAGAATCGACTGAAGCTTTTGATGCAAGGAATACATTTGATC 1363
|||||| |||||| || |||||||| |||||| ||||| |||||||||| | | |||| |
Sbjct 911 GTTCTGCAGAGATGCATAAAGAATCAACTGAAACTTTTAATGCAAGGAAGAAAGTTGAAC 970
Query 1364 ATCT-TGATAAAGATGATGATGATGGTGATATTGATGTATCTACCAAGGTACCT-CCTTT 1421
|| | ||| |||||| | ||||| |||||||| |||| ||||||||| | |||||
Sbjct 971 AT-TATGACGAAGATG-T--TGATG---ATATTGATACATCTCCCAAGGTAC-TGCCTTT 1022
Query 1422 GAGTCAAGTAGTTCAGA-AGTTGGAAGAAGGCTTTACTGCAAAACGCAGAATATC-GAGG 1479
|||||| || ||||||| | ||| ||||||||||| ||||||||| ||||| ||| | |
Sbjct 1023 GAGTCATGTGGTTCAGAGA-TTGAAAGAAGGCTTTTCTGCAAAACACAGAAGATCTGTG- 1080
Query 1480 ATGCATAGATCAGCAAAG-AGATATAAGAT 1508
||||||||||||| |||| | | |||||||
Sbjct 1081 ATGCATAGATCAGTAAAGCA-AGATAAGAT 1109
Score = 171 bits (92), Expect = 3e-41
Identities = 165/199 (83%), Gaps = 9/199 (5%)
Strand=Plus/Plus
Query 1917 ATGCATTGGAAAGTTTTGCAGTGAAGTTAA-AAAGGAAGAAGATGTTGATGAAAGATTGA 1975
||||| || ||| || |||||||||||||| ||| |||||||| |||||||||||||||
Sbjct 1278 ATGCAATGAAAAATTGTGCAGTGAAGTTAAGAAA-GAAGAAGAAATTGATGAAAGATTGA 1336
Query 1976 GGCAGAGAACGCTTGCAATAGAGAAGATGGCACTGGAGCTGGAGACACGTCTTAGTAAGA 2035
||||||| |||||||||| || |||||| | || |||| ||| ||||| ||| | |||
Sbjct 1337 AACAGAGAAAGCTTGCAATAAAGGAGATGGAATTGAAGCTCGAGGCACGTATTATTGAGA 1396
Query 2036 TGGAGAAGAGTTTGG-CAGAGATTAGAAAATGGAAAACCAGAGGAAACCA-GACCAAAAA 2093
||||||||| ||||| || |||||||||||||||||||||||||||| | ||| |||
Sbjct 1397 TGGAGAAGACTTTGGCCA-TGATTAGAAAATGGAAAACCAGAGGAAAC-ATGACTGGAAA 1454
Query 2094 TGG--TTT-TTCTGCTTAG 2109
||| ||| ||||| ||||
Sbjct 1455 TGGAGTTTCTTCTGTTTAG 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79341980335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5