BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18520.1
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488733 jgi|Araly1|488733|fgenesh2_kg.6__1867__AT5G18520.1 2553 0.0
Ahg947874 jgi|Araly1|947874|scaffold_704103.1 65.8 1e-09
> Ahg488733 jgi|Araly1|488733|fgenesh2_kg.6__1867__AT5G18520.1
Length=1592
Score = 2553 bits (1382), Expect = 0.0
Identities = 1533/1602 (96%), Gaps = 25/1602 (2%)
Strand=Plus/Plus
Query 9 GTTATTCAATCCTCCTCTTACACGTCTCTCTCTCATTCCCCCCGGAGTAACTAACAATGG 68
||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||
Sbjct 1 GTTATTCAATCCTCCTCCTACACGTCTCTCTCTCATTCCCTCCGGAG----TAACAATGA 56
Query 69 CGAAAATGCCCCTCTCCGTCGTCGTCTTCCTCCTCTT-CTCCGCCG-C-T--TTCCTCGC 123
||||||||||||||||||||||| || |||||||||| || ||||| | | || | | |
Sbjct 57 CGAAAATGCCCCTCTCCGTCGTCTTCATCCTCCTCTTCCT-CGCCGTCGTGGTT-C-CAC 113
Query 124 CGTATCTATGGCGGAGATCAAATCACTCGTCATCTCCGATGACGCTCGTCCGATGATCCT 183
| | ||| |||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 114 C-T-TCTCTGGCGGAGATCAAATCCCTCGTCATCTCGGACGACGCTCGTCCGATGATCCT 171
Query 184 CTTCGAGAAATTCGGATTCACACACACCGGCCACGTCACGGTCTCAATCTCCTCCGTCTC 243
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 172 CTTCGAGAAATTCGGATTCACACACACCGGCCACGTCACCGTCTCAATCTCCTCCGTCTC 231
Query 244 CGTCGTGTCCACTTCCTCAGATCCGAATCCAGAAGCATCGCGTCTCGGATTCTTCCTCCT 303
|||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 232 CGTCGTCTCCACTTCCGCAGATCCAAATCCAGAAGCATCGCGTCTCGGATTCTTCCTCCT 291
Query 304 CTCCGAAGAATCTCTTCTCCAGGTCCTCCTCGAGATCCAACAGAACCCTAGATTCTGCGT 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CTCCGAAGAATCTCTTCTCCAGGTCCTCCTCGAGATCCAACAGAACCCTAGATTCTGCGT 351
Query 364 TCTAGATTCGCACTACGTCACTCATCTCTTCACATTCAGAGATCTATCTCCTCCTCCAAA 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 352 TCTAGATTCGCACTACGTCACTCATCTCTTCACATTCAGAGATCTATCTCCTCCGCCAAA 411
Query 424 CTCCAGATTCAACCAATCTTACCCAGTCACTTCCCCAAACGAATACTCTCTCTTCTTCGC 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 CTCCAGATTCAACCAATCTTACCCAGTCACTTCCCCAAACGAATACTCTCTCTTCTTCGC 471
Query 484 GAATTGTGTCCCTGAAACCAAAGTTTCCATGGCGGTTCGTACAGAGATGTATAACAAAGA 543
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 472 GAATTGCGTCCCTGAAACCAAAGTTTCCATGGCGGTTCGCACAGAGATGTATAACAAAGA 531
Query 544 TCCAAACGGATCTAAAGACTATTTACCAGCTGGATCTACTCAATTACCAACTCTCTACTC 603
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 532 TCCAAACGGATCTAAAGACTATCTACCAGCTGGATCTACTCAATTGCCAACTCTCTACTC 591
Query 604 TTTCTTCTTCCTCTGCTACGTTGCTTTCCTCGGTTTCTGGAGCTACACTTGCTGGACTAA 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 592 CTTCTTCTTCCTCTGCTACGTTGCTTTCCTCGGTTTCTGGAGCTACACTTGCTGGACCAA 651
Query 664 CAAACAAACCGTTCATCGGATCCATCTTCTCATGGCAGGTCTTCTTCTTATCAAATCGTT 723
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 652 CAAACAAACCGTTCATCGGATCCATCTTCTCATGGCAGGGCTGCTTCTTATCAAATCGTT 711
Query 724 GAATCTCATCTGTGCAGCTGAAGATAAACATTACGTGAAGATCACTGGAACGCCACATGG 783
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 712 GAATCTGATTTGTGCAGCTGAAGATAAACATTACGTGAAGATCACTGGAACGCCTCATGG 771
Query 784 CTGGGATATTCTCTTCTACATCTTCCAATTCATCCGTGTTGTTCTTCTCTTCACCGTCAT 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 772 CTGGGATATTCTCTTCTACATCTTCCAATTCATCCGTGTTGTTCTTCTCTTCACCGTGAT 831
Query 844 CATCTTGATCGGAACTGGCTGGTCGTTTTTGAAACCTTTCTTGCAGGAGAAGGAGAAGAA 903
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 832 CATCTTGATCGGAACTGGCTGGTCGTTTTTGAAACCTTTCTTGCAGGAGAAAGAGAAGAA 891
Query 904 TGTGTTGATCATTGTGATCCCACTTCAGGTATTAGCCAACATTGCTTCCATTGTCATTGG 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TGTGTTGATCATTGTGATCCCACTTCAGGTATTAGCCAACATTGCTTCCATTGTCATTGG 951
Query 964 TGAAACTGGACCTTTTATCAAAGATTGGGTTACATGGAACCAAGTGTTTTTGCTTGTGGA 1023
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 952 TGAAACTGGACCTTTTATCAAAGATTGGGTTACTTGGAACCAAGTGTTTTTGCTTGTGGA 1011
Query 1024 TATCATCTGTTGCTGTGCTATTATCTTCCCGATTGTTTGGTCGATTCGATCTTTGAGAGA 1083
|||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct 1012 TATCATCTGTTGCTGTGCTATTATCTTCCCCATTGTCTGGTCTATTCGATCCTTGAGAGA 1071
Query 1084 AACCTCGAAAACCGATGGTAAAGCTGCGAGGAACTTGTCGAAGCTCACGTTGTTTAGACA 1143
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 GACCTCGAAAACCGATGGTAAAGCTGCGAGGAACTTGTCGAAGCTCACGTTGTTTAGACA 1131
Query 1144 GTTCTACATTGTTGTCATCGGATATCTTTACTTCACGAGAATCGTGGTGTTTGCGCTTAA 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GTTCTACATTGTTGTCATCGGATATCTTTACTTCACGAGAATCGTGGTGTTTGCGCTTAA 1191
Query 1204 AACCATTGCGGCTTATAAGTACCAGTGGGTGAGCTTTGCAGCTGAGGAGATTGTGAGTTT 1263
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1192 AACCATTGCGGCTTATAAGTACCAGTGGGTGAGTTTTGCAGCGGAGGAGATTGTGAGTTT 1251
Query 1264 GGTGTTCTATGTGATCATGTTTCATATGTTTAGGCCTGAGGAGAAGAATGAGTACTTTGC 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GGTGTTCTATGTGATCATGTTTCATATGTTTAGGCCTGAGGAGAAGAATGAGTACTTTGC 1311
Query 1324 TGTTGATGATGATGAAGAAGAAGCTGCTGCTTTGGCCCTTAGGGACGAAGAGTTTGAGCT 1383
|||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 1312 TGTTGATGATGATGAAGAAGAAGCTGCTGCTTTGGCTCTTAGGGACGAAGAATTCGAGCT 1371
Query 1384 TTGAAAAGCATACA-ATGGAGGA-TTTTTCTTGGTAAGCAAGGATTTATTCTTTTTCT-- 1439
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1372 TTGAAAAGCATACACATGGAGGAATTTTTCTTGGTAAGCAAGGATTTATTCTTTTTTTTT 1431
Query 1440 --CAGTATGTCTATGTTTAAAGTCGTCTAATACTGCAACTGTTATTGTTCCCTTTTT-GT 1496
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1432 TTCAGTATGTCTATGTT-AAAGTCGTCTAATACTGCAACTGTTATTGTTCCCTTTTTTGT 1490
Query 1497 TAAATTTTGTTCTT-T--ACATTTAAATTTTCTCTGTTATCAACACCTTTTATGGCTTTA 1553
||| |||||||||| | |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1491 TAATTTTTGTTCTTCTTTACATTTAAATTTTCTCTGTTATCAACACTTTTTATGGCTTTA 1550
Query 1554 TATCAATGTGGATTTTGGGGCTGTAGCAAATTTTATTTGAAA 1595
||| |||||||||||||||||||||||||||||||||||||
Sbjct 1551 AATCGATGTGGATTTTGGGGCTGTAGCAAATTTTATTTGAAA 1592
> Ahg947874 jgi|Araly1|947874|scaffold_704103.1
Length=309
Score = 65.8 bits (35), Expect = 1e-09
Identities = 41/44 (93%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 64 AATGGCGAAAATGCCCCTCTCCGTCGTCGTCTTCCTCCTCTTCT 107
|||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 20 AATGACGAAAATGCCCCTCTCCGTCGTCGTCTTCTTCCTCCTCT 63
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5