BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18540.1
Length=851
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488737 jgi|Araly1|488737|fgenesh2_kg.6__1871__AT5G18540.1 1273 0.0
> Ahg488737 jgi|Araly1|488737|fgenesh2_kg.6__1871__AT5G18540.1
Length=839
Score = 1273 bits (689), Expect = 0.0
Identities = 800/852 (94%), Gaps = 14/852 (2%)
Strand=Plus/Plus
Query 1 AAGACGGCCGTCAAAGTTTCGGTGACGGAGAATATTGTTGCCGACGGAAATTGGAATGGG 60
|||||||||||||||||||||||||||||||||| | |||||||||| ||||| ||||||
Sbjct 1 AAGACGGCCGTCAAAGTTTCGGTGACGGAGAATA-T-TTGCCGACGGGAATTGCAATGGG 58
Query 61 AGGAGGAGCGATTGACGAGGAGCTGACAGAAGATGAGAAGAGAGCTCTCAGAGGAAGCAA 120
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 59 AGGAGGAGCTATTGACGAAGAGCTGACAGAAGATGAGAAGAGAGCTCTCAGAGGAAGCAA 118
Query 121 ATTCGCTCCTCTTACTTCTCTTCCTTCGTCTTCTCGCTCTAAGCCTCCCAGATTGGCTCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ATTCGCTCCTCTTACTTCTCTTCCTTCGTCTTCTCGCTCTAAGCCTCCCAGATTGGCTCA 178
Query 181 TCCAGGTGGACCATTGAAGACGAATAAAGCGGCGGCTTTAGCCAAGTTTCTAGAGAGGAA 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCCAGGTGGACCCTTGAAGACGAATAAAGCGGCGGCTTTAGCCAAGTTTCTAGAGAGGAA 238
Query 241 GCTGCAAGATCCTAATGGGTTAGCTTCCATTGATCCAGCTCTTGTCGAATTGGCCGTCAA 300
||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 239 GCTGCAAGATCCTAACGGGTTAGATTCCATTGATCCAGCTCTCGTCGAATTGGCCGTCAA 298
Query 301 AAACGCCAAAGACACTGTTATTTCGAGTGGGGCCTCGAGTTCAGGAAGAAGAATTCAACA 360
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 299 AAACGCCAAAGACACTGTTATTTCGAGTGGGGCTTCGAGTTCAGGAAGGAGAATCCAACA 358
Query 361 CGTTGCTTCATTCGAAGATGTCGAGGTATCTTCTGATGACGATAAGATAGAGAACACTAA 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 359 CGTTGCTTCATTCGAAGATGTCGAGGTATCTTCTGACGACGATAAGATAGAGAACACTAA 418
Query 421 GCTTAACaaaaagaaaaagaagaaaaacgcaaagaagaaaaaagaagagaaaaagaagaa 480
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 419 GCATAACAAAAAGAAAAAGAAGAAAAACGCAAAGAAGAAAAAAGATGAGAAAAAGAAGAA 478
Query 481 gaaaaacaaaaagCATAAGCAACAGATCACTGTCGATGAAGATGCCAAGTTAAAGAGACC 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 479 GAAAAACAAAAAGCATAAGCAACAGATCACGGTCGATGAAGATGCCAAGTTAAAGAGACC 538
Query 541 CAATAAGAAGTTGAAGCTTTAGTTTCCtttttttCGCTACACATTACTGGTTACATATTT 600
|||||||||||||||||||||||||| ||||| | |||| ||||||||||| ||||||||
Sbjct 539 CAATAAGAAGTTGAAGCTTTAGTTTCATTTTTCTGGCTATACATTACTGGTCACATATTT 598
Query 601 GATGAAGATGGTTTAGCTGGGTCTTTAGAAGAACAAACTCAATCACTCTTATGTGTCTGA 660
|||||||| |||||| | ||| |||| |||||||||||||||||||| ||| |||
Sbjct 599 GATGAAGACGGTTTAACAGGGACTTTCGAAGAACAAACTCAATCACTGGTAT----CTG- 653
Query 661 AAATGTCTGATCCAAAGAATCTGTTAGTCCGATGGTTAGCCAAAGATTAGCATGATGATC 720
| |||||||||||||||||||||||| ||||||||| ||||||||||||||| |||
Sbjct 654 ---T--CTGATCCAAAGAATCTGTTAGTCCAATGGTTAGCTAAAGATTAGCATGATAATC 708
Query 721 TTTCTTCTTAATGT-AGGTTAGATTTCTCCGGCTCTATTTGGTTAAATCTGAGACCGGAG 779
||||||||| |||| || ||||||||||||| || |||| ||||||||||||||| ||||
Sbjct 709 TTTCTTCTTTATGTCAG-TTAGATTTCTCCGTCTTTATTCGGTTAAATCTGAGACTGGAG 767
Query 780 TTGATTGTAATTTTAGAACGAATAGCTTCATGGATCTGAAATTTGTATTTTGGTTAAAGA 839
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TTGATTGTGGTTTTAGAACGAATAGCTTCATGGATCTGAAATTTGTATTTTGGTTAAAGA 827
Query 840 GCAAATGCTTGT 851
|||||||||||
Sbjct 828 TCAAATGCTTGT 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31489529442
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5