BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18550.1
Length=2136
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488738 jgi|Araly1|488738|fgenesh2_kg.6__1872__AT5G18550.1 3096 0.0
Ahg477944 jgi|Araly1|477944|fgenesh2_kg.3__645__AT3G06410.1 811 0.0
> Ahg488738 jgi|Araly1|488738|fgenesh2_kg.6__1872__AT5G18550.1
Length=2152
Score = 3096 bits (1676), Expect = 0.0
Identities = 2025/2181 (93%), Gaps = 74/2181 (3%)
Strand=Plus/Plus
Query 1 GAAAGATCAAAACTTCCCCATCCCTCTTCCAAAATCCATCCCCTCaaaaaaaat----aa 56
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1 GAAAGATCAAAACTTCCCCATCCCTCTTCCAAAATCCAT-CCCTCAAAAAAAATAAAAAA 59
Query 57 aaatacttcctttcgaaatttcgctaaaaaaaaaaatcgaagccgaaaacaaatagtaga 116
|||||| ||||||||||||||||| ||||||||||||||||| | | | |
Sbjct 60 AAATAC-TCCTTTCGAAATTTCGC----AAAAAAAATCGAAGCCG-------A-A--A-A 103
Query 117 agaaagaaaaaagTTTCAGCTTTAAGGAAAGAGATCAAGCGACTGAGAGTGGTGTGGAGA 176
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 A-AAA-AAAAAAGTTTCAGCTTTAAGGAAAGAGATCAAGCGACTGAGAGTGGTGTGGAGA 161
Query 177 CAGAACCAACCACGATCTGTGGtttttttttttttgtccttttttttCTCCAATCTCAGA 236
||||||||||||||||||||||||||||||||||| | | || |||||||||||||||
Sbjct 162 CAGAACCAACCACGATCTGTGGTTTTTTTTTTTTT-T-C-TTCCTTTCTCCAATCTCAGG 218
Query 237 AATaaaaaaaGTTTCTTCCCGACACTCCCATTTGATCGGAGGGCTTCGACATTGGTGGGC 296
|| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 219 AAGAAAAAAAGTTTCTTCCCGACACTCCCATTTGATCGGAGAGC-TCGACATTGGTGGGT 277
Query 297 TCTGTTTCGCCGCTCCGGCTAAAAGTTAGTGTAAAGCAAAAATGGAACGGTACGGTGGCG 356
|||||||||| |||||||||||| ||||| ||||| |||||||||| |||||||||||||
Sbjct 278 TCTGTTTCGCGGCTCCGGCTAAAGGTTAGGGTAAAACAAAAATGGAGCGGTACGGTGGCG 337
Query 357 CCGGAGAAGATGAGTCACGGTCGGATCCATCACATGAATGGTCCGCTCAAGGAACCGAAA 416
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 338 CCGGAGAAGATGAGTCGCGGTCGGATCCATCACATGAATGGTCCGCTCCAGGAACCGAAA 397
Query 417 CTGGTATCGAAGCTTCGATGTGGCGGTTAGGGTTGCGAGGTGGTGGAGGTGGAGGTGAAA 476
| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 398 CCGGTATCGAAGCTTCGATGTGGCGGTTAGGGTTGCGAGGCGCTGGAGGTGGAGGTGAAT 457
Query 477 CGTTCCCGGAGCGACCCGATGAACCCGATTGTATCTATTATTTACGAACCGGTGTTTGCG 536
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 458 CGTTCCCGGAGCGACCCGATGAACCCGATTGTATCTATTTTTTACGAACCGGTGTTTGCG 517
Query 537 GGTACGGGTCTCGATGTCGGTTCAATCACCCACGAAACCGTGCTCCGGTCTTGGGAGGTC 596
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 GGTACGGGTCTAGATGTCGGTTCAATCACCCACGAAACCGTGCTCCGGTCTTGGGAGGTC 577
Query 597 TCAGAACAGAAGCTGGAGAGTTCCCTGAGAGAATGGGACAACCTGTTTGTCAGCATTTCA 656
||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
Sbjct 578 TCAGAACAGAAGCTGGAGAATTCCCTGAGAGAATGGGACAGCCTGTGTGTCAGCATTTTA 637
Query 657 TGCGAACAGGAACATGTAAATTTGGTGCTTCTTGTAAGTATCACCATCCTAGAC-A--AG 713
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||
Sbjct 638 TGCGAACAGGAACATGTAAATTCGGTGCTTCTTGTAAGTATCACCATCCTAGACAAGGAG 697
Query 714 GAGGAGGAGGAGATTCTGTTACTCCTGTCTCCCTAAATTACATGGGATTCCCATTACGCC 773
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 698 GAGGAGGAGGAGATTCTGTTACTCCTGTCTCACTAAATTACATGGGATTTCCATTACGCC 757
Query 774 CGGGGGAGAAAGAATGCTCCTATTTCATGAGAACCGGTCAGTGTAAATTCGGTTCCACCT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 CGGGGGAGAAAGAATGCTCCTATTTCATGAGAACCGGTCAGTGTAAATTCGGTTCCACCT 817
Query 834 GTCGATATCACCATCCAGTCCCTCCTGGTGTACAAGCTCCATCTCAGCAGCAGCAACAAC 893
|||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct 818 GTCGATATCACCATCCCGTCCCTCCTGGTGTACAAGCTCCA--TC-GCAGCAGCAACAAC 874
Query 894 AGTTATCCGCTGGTCCAACTATGTATCCATCGCTTCAGTCTCAAACCGTTCCTTCATCGC 953
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 875 AGTTATCCGCTGGTCCAACTATGTATCAATCGCTTCAGTCTCAACCCGTTCCTTCATCGC 934
Query 954 AGCAATACGGAGTAGTTCTAGCAAGACCTCAGCTCTTACCAGGCTCATATGTTCAAAGCC 1013
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 935 AGCAATACGGAGTAGTTCTAGCAAGACCTCAGCTTTTACCAGGCTCCTATGTTCAAAGCC 994
Query 1014 CTTATGGTTACGGTCAAATGGTTCTTCCTCCTGGTATGGTTCCATACTCGGGCTGGAACC 1073
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 995 CTTATGGTTACGGTCAAATGGTTCTTCCTCCCGGTATGGTTCCATACTCGGGCTGGAACC 1054
Query 1074 CTTACCAGGCTTCTGTAAGTGCGATGCCTTCCCCTGGGACTCAACCGTCAATGGGAACCA 1133
|||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||
Sbjct 1055 CTTACCAGGCTTCTGTAAGTGCCATACCTTCTCCTGGGACTCAACCGTCAATTGGAACCA 1114
Query 1134 GCTCTGTTTATGGAATCACTCCGTTATCTCCCTCAGCGCCTGCTTATCAATCCGGTCCAT 1193
|||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1115 GCTCTGTTTATGGAATTACGCCGTTATCTCCTTCAGCGCCTGCCTATCAATCCGGTCCAT 1174
Query 1194 CTTCTACCGGTGTTTCAAATAAGGAACAAACTTTTCCTCAGCGACCTGAACAACCTGAGT 1253
||||||| |||||| |||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1175 CTTCTACGGGTGTTACAAATAAGGAACAAACTTTTCCTCAGCGACCTGAACAACCCGAAT 1234
Query 1254 GTCAATACTTTATGAGAACCGGAGATTGTAAATTCGGAACCTCTTGCAGATTCCATCATC 1313
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1235 GTCAATACTTTATGAGAACCGGAGATTGTAAATTCGGATCCTCATGCAGATTCCATCATC 1294
Query 1314 CTATGGAAGCAGCATCGCCAGAGGCAAGTACCCTCAGCCACATTGGCCTCCCACTTCGTC 1373
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 CTATGGAAGCAGCATCGCCCGAGGCAAGTACCCTCAGCCACATTGGCCTCCCACTTCGTC 1354
Query 1374 CCGGCGCAGTGCCATGCACTCACTTTGCGCAACACGGTATTTGCAAGTTTGGGCCTGCCT 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 CCGGCGCAGTGCCATGCACTCACTTTGCGCAACACGGTATTTGCAAGTTTGGGCCTGCCT 1414
Query 1434 GCAAATTTGACCACTCCTTGGGCTCTTCTTCACTAAGCTACAGCCCATCCCCTTCTTCAC 1493
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1415 GCAAATTTGACCACTCCTTGGGCTCTTCTTCACTAAGCTACAGCCCATCCCCCTCTTCTC 1474
Query 1494 TCACGGACATGCCCGTCGCACCTTACCC-CTC----C-TC---GCTCGGCACATTAGCTC 1544
|||||||||||||||||||||||||||| ||| | || |||||||||||||||||
Sbjct 1475 TCACGGACATGCCCGTCGCACCTTACCCTCTCGAGTCCTCCTCGCTCGGCACATTAGCTC 1534
Query 1545 CATCATC--C-TCATC-T-----GACCAATGCACTGAGCTTATCTCTTCCAGCTCTATTG 1595
||||||| | ||||| | |||||| ||||||||||| ||||||||||||||||||
Sbjct 1535 CATCATCATCATCATCCTCATCTGACCAACGCACTGAGCTTCTCTCTTCCAGCTCTATTG 1594
Query 1596 AACCTATAACAACAACAACTGGTGGCTCAGAAACTGTGGCTGCTGGAGTCTCTTCT---- 1651
|||||||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1595 AACCTATAACCACAGCAACAAGTGGCTCAGAAACTGTGGCTGCTGGAGTCTCTTCTTCTT 1654
Query 1652 -----ATGACCAGTGATGTGAGCCATCCCGAGCCTGCTGAGACCAATAAAGGTGATTCAG 1706
|||||||| | ||| |||||||||||||||||||||||| |||||||||| ||||
Sbjct 1655 CTTCTATGACCAGCGGTGTTAGCCATCCCGAGCCTGCTGAGACCGATAAAGGTGACTCAG 1714
Query 1707 CTAGCAATGAGGCTAAGACTTCAAGTTAAAGAGACAAATCTTAAAGGAGAGAAGAGAAtc 1766
|||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1715 CTAGCATTGAGGCTAAGACTTCAAGTTAAAGAGACAAATCTCAAAGGAGGGAAGAGAATC 1774
Query 1767 tctctctattcttcttagattatt-atctctcttattctctctatatctctcttcttctt 1825
|||||||| ||||||||||||||| |||||||||||||||||||| || | |||||||||
Sbjct 1775 TCTCTCTAATCTTCTTAGATTATTCATCTCTCTTATTCTCTCTATCTC-C-CTTCTTCTT 1832
Query 1826 TTCATCAAACTTTCATGAACTCAGGAACATAAAAAGGATATTTTTTGGGTGGAGAGACAA 1885
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1833 TTCATCAAACTTTCATGAACTCAGGAACATAAAAAGGATATTTTTTGGGCGGAGAGACAG 1892
Query 1886 CAACAGA-AAGCAAAGCAGAGAGATAGACGAAAGGAGTtctctctactcttctatgtcat 1944
||| || || ||| |||||||||||||| ||||||| ||||||||||| ||| ||| ||
Sbjct 1893 CAATAGGTAA-CAACGCAGAGAGATAGACAAAAGGAGCTCTCTCTACTCCTCTGTGTTAT 1951
Query 1945 gtctctcctcttaggtctctctTACCATGTTCATATTATTCCTTCATACGGCCAtctctc 2004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 GTCTCTCCTCTTAGGTCTCTCTTACCATGTTCATATTATTCCTTCATACGGCCATCTCTC 2011
Query 2005 tgtcttttgttcttctttt-t---ctttttGGAAACGATGATTAATAAA-TGGCCTTATA 2059
||||||||||| || |||| | ||||||||||||| ||||||||||| ||||||||||
Sbjct 2012 TGTCTTTTGTTGTTTTTTTCTTTTCTTTTTGGAAACGTTGATTAATAAAATGGCCTTATA 2071
Query 2060 TAT-T-CACAAAAATCCCCTGTTTATTTTT-AAAACTTT-ATGGAATATGGGAATTAACT 2115
||| | ||||| |||||||||||||||||| |||| ||| ||||||||| ||||||||||
Sbjct 2072 TATATTCACAACAATCCCCTGTTTATTTTTCAAAAGTTTTATGGAATATTGGAATTAACT 2131
Query 2116 AATTAATAGTCCAATTTTTAT 2136
|||||| ||||||||||||||
Sbjct 2132 AATTAAGAGTCCAATTTTTAT 2152
> Ahg477944 jgi|Araly1|477944|fgenesh2_kg.3__645__AT3G06410.1
Length=1851
Score = 811 bits (439), Expect = 0.0
Identities = 962/1209 (80%), Gaps = 57/1209 (5%)
Strand=Plus/Plus
Query 337 AATGGAACGGTACGGTGGCGCCGGAGAAGATGAGTCACGGTCGGATCCATCACATGAATG 396
|||||| ||||||||| ||||||| ||||| | ||| || ||||||||||| | ||||||
Sbjct 235 AATGGAGCGGTACGGTCGCGCCGGTGAAGAAGGGTCGCGATCGGATCCATCTCTTGAATG 294
Query 397 GTCCGCTCAAGGAACCGAAACTGGTA-TCGAAGCTTCGATGTGGCGGTTAGGGTTGCGAG 455
| || |||| ||| ||||| || | ||||||||||||||||||||||||||||| | |
Sbjct 295 GACCTCTCATGGAGGTGAAACCGG-ACTCGAAGCTTCGATGTGGCGGTTAGGGTTGAGCG 353
Query 456 GTGGTGGAGGTGGAGGTGAAACGTTCCCGGAGCGACCCGATGAACCCGATTGTATCTATT 515
| || ||||| || || ||| ||||||||||||||| || || |||||||| ||||
Sbjct 354 GCGGCGGAGG---AG---AATCGTACCCGGAGCGACCCGACGAGCCTGATTGTATTTATT 407
Query 516 ATTT-ACGAACCGGTGTTTGCGGGTACGGGTCTCGATGTCGGTTCAATCACCCACGAAAC 574
| || | ||||||| ||||||||||||||||| |||||||||| |||||||||||| |
Sbjct 408 ACTTGA-GAACCGGCGTTTGCGGGTACGGGTCAAGATGTCGGTTTAATCACCCACGAGAT 466
Query 575 CGTGCTCCGGTC-TTGGGAGGTCTCAGAACAGAAGCTGGAGAGTTCCCTGAGAGAATGGG 633
|||| |||| |||| |||| | ||| ||||||||||| || || ||||| |||||
Sbjct 467 CGTGGAGCGGTTATTGG-AGGTGTGAGAGGAGAAGCTGGAGCTTTACCGGAGAGGATGGG 525
Query 634 ACAACCTGTTTGTCAGCATTTCATGCGAACAGGAACATGTAAATTTGGTGCTTCTTGTAA 693
||| || |||||||||||||| ||||| || ||||| ||||||||||| |||||||| ||
Sbjct 526 ACATCCGGTTTGTCAGCATTTTATGCGGACGGGAACGTGTAAATTTGGCGCTTCTTGCAA 585
Query 694 GTATCACCATCCTAGACAAGGAGGAGGAGGAGATTCTGTTACTCCTGTCTCCCTAAATTA 753
|||||| |||||||| |||||||| || || | ||| ||| | |||||||| || | |||
Sbjct 586 GTATCATCATCCTAGGCAAGGAGGTGGTGGTGGTTCCGTTGCGCCTGTCTCGCTTAGTTA 645
Query 754 CATGGGAT-TCCCATTACGCCCGGGGGAGAAAGAATGCTCCTATTTCATGAGAACCGGTC 812
|||||| ||| |||||||||||| |||||||| ||||| |||| | ||||||||||||
Sbjct 646 TTTGGGATATCC-ATTACGCCCGGGAGAGAAAGAGTGCTCTTATTACTTGAGAACCGGTC 704
Query 813 AGTGTAAATTCGGTTCCACCTGTCGATATCA-CCATCCAGTCCCTCCTGG-TGTACAAGC 870
|||||||||| |||| || ||| ||| ||| |||||| || || | | | |||||| |
Sbjct 705 AGTGTAAATTTGGTTTGACTTGTAGAT-TCAACCATCCCGTGCCAC-TCGCTGTACAGGG 762
Query 871 TCCATCTCAGCAGCAGCAACAACAGTTATCCGCTGGTCCA-ACTATGTATCC-ATCGCTT 928
|||| ||||||| |||||||| || | || | | | || ||||| ||||| | | |||
Sbjct 763 TCCACCTCAGCATCAGCAACAGCAAC-AGCCACAGCTACAGACTATTTATCCGA-CACTT 820
Query 929 CAGTCTCAAACCGTTCCTTCATCGCAGCAATACGGAGT-AGTTCT-AGCAAGACC-TCAG 985
||||||||| |||||||||| || || ||||| || || |||| | | |||| || ||
Sbjct 821 CAGTCTCAATCCGTTCCTTCCTCTCAACAATATGG-GTTAGTTTTGA-CAAGGCCATCT- 877
Query 986 CTCTTACCAGGCTCATATGTTCAAAGCCCTTATGGTTACGGTCAAATGGTTCTTCCTCCT 1045
|| ||||| || |||||| ||| ||||||||| ||| | || ||||||||| |||||
Sbjct 878 CTTTTACCTGGTTCATATCTTCCAAGCCCTTACGGTC-C--TCCAATGGTTCTGCCTCCG 934
Query 1046 GGTATGGTTCCATACTCGGGCTGGAACCCTTACCAGGCTTCTGTAAGTGCGATGCCTTCC 1105
|| |||||||||||||| || ||||| ||||||||||||||| ||||||| ||||||||
Sbjct 935 GGAATGGTTCCATACTCTGGTTGGAATCCTTACCAGGCTTCTTTAAGTGCAATGCCTTCG 994
Query 1106 CCTGGGACTCAACCGTCAATGGGAACCAGCTCTGTTTATGGAATCACTCCGTTATCTCCC 1165
||||| ||||||||||| || ||| | |||||||||||||||||||| |||||||||||
Sbjct 995 CCTGGAACTCAACCGTCTATTGGATCAAGCTCTGTTTATGGAATCACGCCGTTATCTCCT 1054
Query 1166 TCAGCGCCTGCTTATCAATCCGGTCCATCTTCTACC-GGT--GT-TTCAAATAAGG-AAC 1220
|||| | |||| ||| | | || ||| | | | | || || |||||||| ||
Sbjct 1055 TCAGTGACTGCATAT-A--CAGGAACATAT-CAATCAGGCCCGTCTTCAAATACCTCAA- 1109
Query 1221 AA-ACTTTTCCTCAGCGACCTGAACAACCTGAGTGTCAATACTTTATGAGAACCGGAGAT 1279
|| | ||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct 1110 AAGAGTTT-CCTCAGCGACCTGATCAACCCGAGTGTCAATACTTCATGAGAACCGGTGAC 1168
Query 1280 TGTAAATTCGGAACCTCTTGCAGATTCCATCATCCTATGGAAGCAGCATCG-CC-A-GA- 1335
|||||||||||| |||||||| ||| |||||||||| | || |||| || || | ||
Sbjct 1169 TGTAAATTCGGATCCTCTTGCCGATACCATCATCCTGTAGATGCAGT-TCCACCTAAGAC 1227
Query 1336 -GGCAA-GTACCCTCAGC-CACATTGGCCTCCCACTTCGTCCCGGCGCAGTGCCATGCAC 1392
||| || || ||||| | ||||||||| |||||||||||||| | || || ||||||
Sbjct 1228 TGGCCTTGT-CC-TCAGCTC-CATTGGCCTTCCACTTCGTCCCGGAGTAGCGCAATGCAC 1284
Query 1393 TCACTTTGCGCAACACGGTATTTGCAAGTTTGGGCCTGCCTGCAAATTTGACCACTCCTT 1452
||||||| | |||||||| || ||||||||||| || || || | ||||| ||||| |
Sbjct 1285 TCACTTTTCTCAACACGGAATCTGCAAGTTTGGACCAGCGTGTAGGTTTGATCACTCAAT 1344
Query 1453 GGGCTCTTCTTCACTAAGCTACAGCCCATCCCCTTCTTCACTCACGGACATGCCCGTCGC 1512
| | | | |||| || |||||||| || || | || ||||| || || |||||||| ||
Sbjct 1345 GAG-T-T-CTTCGCTTAGCTACAGTCCGTCTGCATCATCACTAACCGATATGCCCGTGGC 1401
Query 1513 ACCTTACCC 1521
|| |||||
Sbjct 1402 TCCATACCC 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80370416950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5