BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18560.1
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488739 jgi|Araly1|488739|fgenesh2_kg.6__1873__AT5G18560.1 2139 0.0
> Ahg488739 jgi|Araly1|488739|fgenesh2_kg.6__1873__AT5G18560.1
Length=1388
Score = 2139 bits (1158), Expect = 0.0
Identities = 1322/1399 (94%), Gaps = 20/1399 (1%)
Strand=Plus/Plus
Query 3 aaaaaaaaaCTTACTCATCATAAGATATCTTTAACCAAAACCCTAAAAGAAACCTCCTTT 62
|||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAACCTTACTCATCATAACACATCTTTAACCAAAACCCTAAAAGAAACCTCCTTT 60
Query 63 CaaaaaaaCCATTTCTTCATCATCATGTCAACCTCCAAAACCCTAGACCATAATAAACCA 122
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CGAAAAAACCATTTCTTCATCATCATGTCAACCTCCAAAACCCTAGATCATAATAAACCA 120
Query 123 TTTGAAACATCCCAAACGCAAATGGGTTTTGCTCTGATCCACCAAAACACATCCGCCAAC 182
||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 TTTGAGACATCCCAAACTCAAATGGGTTTTGCTCTGATCCACCAAAACACATCCACCAAC 180
Query 183 ACAACCACCACCACCACAACCGGCGAGAGACGAGGCCGGAGATCAAAGCAAGCGGAGCCA 242
|||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||
Sbjct 181 ACAACCACCACCACCACAACGGGAGAGAGAAGAGGCCGGAGATCAAAGCAAGCGGAGCCA 240
Query 243 GGGAGGTTCCTAGGAGTCCGGAGACGTCCATGGGGTCGTTACGCAGCCGAGATAAGAGAT 302
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGCAGGTTCCTAGGAGTCCGGAGACGTCCATGGGGTCGTTACGCAGCCGAGATAAGAGAT 300
Query 303 CCAACCACCAAAGAACGTCACTGGCTAGGCACTTTCGACACAGCTCACGAAGCTGCTCTT 362
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 CCAACCACCAAAGAACGTCACTGGCTCGGCACTTTCGACACAGCTCACGAAGCTGCTCTT 360
Query 363 GCCTACGATAGAGCTGCTCTTTCAATGAGAGGTACTCAAGCTCGAACCAACTTCGTCTAC 422
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 GCCTACGATAGAGCTGCTCTTTCAATGAGAGGCACTCAAGCTCGAACCAACTTCGTCTAC 420
Query 423 ACTCCAACTGATGTCCACACCATCCTCACAAACCCTAATCTCCACTCTCTCATTGTCTCT 482
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 421 ACTCCAACTGATGTTCACACCATCCTTACAAACCCTAATCTTCACTCTCTCATTGTCTCT 480
Query 483 CCTTACAATAACAACCAATCTTTCTTACCAAACTCTTCTCCACAGTTTGTCATCGATCAT 542
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTTACAATAATAACCAATCTCTCTTACCAAACTCTTCTCCACAGTTTGTCATCGATCAT 540
Query 543 CATCCTCATTATCAAAACTATCATCAACCACAACAACCTAAACACACTCTCCCCCAAACT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CATCCTCATTATCAAAACTATCATCAACCACAACAACCTAAACACACTCTCCCCCAAACT 600
Query 603 GTCTTACCCGCGGCTTCTTTCAAAACGCCAGTTCGTCATCAAAGCGTGGATATTCAAGCG 662
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 601 GTCTTACCTGCGGCTTCTTTCAAAACGCCAGTTCGTCATCAAAGCGCGGATATTCAATCG 660
Query 663 TTTGGTAATAGTCCTCAAAACTCATCTTCTAACGGCTCGTTATCTTCTTCACTAGACGAA 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTTGGTAATAGTCCTCAAAACTCATCTTCTAACGGCTCGTTATCTTCTTCACTAGACGAA 720
Query 723 GAAAACAACTTCTTCTTCTCTTTAACAAGCGAAGAACATAATAAGTCCAATAACAACTCG 782
|||||||||||||||||||| ||||||||||||||||||||||| | || | |||
Sbjct 721 GAAAACAACTTCTTCTTCTCGTTAACAAGCGAAGAACATAATAA--C-AA---C---TCG 771
Query 783 GGTTACTTGGATTGCATTGTCCCAAACCACTGCCTTAAACCACCTCCGGAGGCCACCACC 842
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| |||||
Sbjct 772 GGTTACTTGGACTGCATTGTTCCAAACCACTGCCTTAAACCACCTCCGGATGCCGCCACC 831
Query 843 ACCCAAAATCAAGCCGGAGCTAGTTTCACAACTCCGGTAGCAAGCAAAGCCTCTGAACCA 902
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 832 ACCCAAAATCTAGCCGGAGTTAGTTTCACAACTCCGGCAGCAAGCAAAGCCTCTGAATCA 891
Query 903 TATGGAGGGTTTAGTAATAGCTACTTCGAAGATGGTGAGATGATGATGA-TGAATCATCA 961
|| ||||||| |||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 892 TACGGAGGGTGTAGTAATAGCTACTTCGAAGATGGTGAGATGATGATGAATCA-TCATCA 950
Query 962 TGAGTTTGGTTCGTGTGATCTCTCTGCCATGATCACGAACTATGGTGCTGCTGCCGCTTC 1021
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 951 TGAGTTTGGTTCGTGTGATCTCTCTGCCATGATCACTAACTATGGTGCTGCTGCTGCTTC 1010
Query 1022 AATGTCAATGGAAGATTACGGGATGATGGAGCCGCAAGATTTATCTTCTTCTTCTATCGC 1081
|||||| ||||| ||||||| ||| |||||||||||||||||||||||| ||||| ||||
Sbjct 1011 AATGTCGATGGACGATTACGCGATAATGGAGCCGCAAGATTTATCTTCTCCTTCTCTCGC 1070
Query 1082 TGCTTTTGGAGATGTCGTTGCAGACACTACAGGCTTCTACTCAGTCTTTTAGAACATTCt 1141
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1071 TGCTTTTGGAGATGTTGTTGCAGACACTACAGGCTTCTACTCAGTCTTTTAGAATATTCT 1130
Query 1142 atattatatatgt-tttt-tatatatgcaataatattattagtatttacgttattCGATG 1199
|||||| || | | |||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1131 ATATTACATTTCTGTTTTATATATATCCAATAATATTATTAGTATTTACGTTATTCGATG 1190
Query 1200 GTCGTTTGATTGTTGTTGTTAACTATATGTTATCGACTTTATTATATAAATCCTGCTTAT 1259
||||||||||| ||||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct 1191 GTCGTTTGATTTTTGTTGTTAGCTATATGTTACCGACTTTATTATTTAAATCCTGCTTAT 1250
Query 1260 T-GTTTCATGCATCATAAGGTTACCTTACCTTGAAGTTTTGATTTGTTT-TTT---CTTT 1314
| |||||||||| ||||||||||||||||| |||||||||||||||||| ||| ||||
Sbjct 1251 TTGTTTCATGCACCATAAGGTTACCTTACCATGAAGTTTTGATTTGTTTGTTTTTTCTTT 1310
Query 1315 -AATTTGTATTATGGTTTTGATTAGCAAAAAGGGATAATCCGAGTTGTATTAAAGACCAC 1373
||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 1311 TAATTTGTATTATGGTTTTGATTAGCAAAA-GGGATGATGCGAGTTGTATTAAAGACCAC 1369
Query 1374 TTTTTGTCCATGCTACTTC 1392
|||||||||| ||||||||
Sbjct 1370 TTTTTGTCCACGCTACTTC 1388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52526447855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5