BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18570.1
Length=2234
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488740 jgi|Araly1|488740|fgenesh2_kg.6__1874__AT5G18570.1 3256 0.0
> Ahg488740 jgi|Araly1|488740|fgenesh2_kg.6__1874__AT5G18570.1
Length=2081
Score = 3256 bits (1763), Expect = 0.0
Identities = 1989/2095 (95%), Gaps = 28/2095 (1%)
Strand=Plus/Plus
Query 1 AGAGAAACAAATGGCTTCCATATCCATTAACTGTTTCTTCACTCCTCAAGCTCTAGCCCG 60
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1 AGAGAAACAAATGGCTTCCATATCCATAAACAGTTTCTTCACTCCTCAAGCTCTAGCCCG 60
Query 61 ACCCAGTAGGACGA-GGAAGATTTTCGCTAAACCTGACAAAGTCTCGGGAAGAACCCGAA 119
||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 ACCCAACAGGAC-ACGGAAGATCTTCGCTAAACCTGACAAAGTCTCGGGAAGAACCCGAA 119
Query 120 GCCCTAGAAAAACGAAGCTTCAACGCGAAGTCGAGCTTAAATCTCGAGGCGGTGATAAAC 179
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 ACCCTAGAAAAACGAAGCTCCAACGCGAAGTGGAGCTTAAATCTCGAGGCGGTGATAAAC 179
Query 180 TCCAGCCAGTTTCTGATGCCGGCGGCGAAGCCACTACTTATACACGTCTTCCTCCTAGGG 239
|||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 180 TCCAGCCAATTTCTGACGCCGGCGGCGAAGCCACCACTTATACACGTCTTCCTCCTAGGG 239
Query 240 AAGATTACTATGATGTCTCTCTTTTGTCTTCATCTTATTTAAAAGTTTCTGAAGAAGTGA 299
| |||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 AGGATTTCTCTGATGTCTCTCTTTTTTCTTCATCTTATTTAAAAGTTTCTGAAGAAGTGA 299
Query 300 AGCTATCTGAGTCCAATGTCGCGAGGGttgaggaaaagattgaaactttgagggaaattg 359
|| |||||||||| |||||||||||||||||||||||||| ||| ||||| |||||| ||
Sbjct 300 AGTTATCTGAGTCAAATGTCGCGAGGGTTGAGGAAAAGATGGAACCTTTGGGGGAAACTG 359
Query 360 aggaagaagagaaagaaaag-gaggtgaagagTTATGATGATGATGATATTTGGGGAAAT 418
||||||||||||||| |||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 360 AGGAAGAAGAGAAAG-AAAGAGAGGTTAAGAGCTATGATGATGATGATATTTGGGGAAAT 418
Query 419 TACAGAAGATTAGATGTGTTTGAAGGGAGTTCAAGATCAATTGATGAAGATGATGAAGAT 478
|| |||||||| ||||| |||||||| | |||| ||||||||||||||||||||||||||
Sbjct 419 TATAGAAGATTGGATGTTTTTGAAGGTAATTCAGGATCAATTGATGAAGATGATGAAGAT 478
Query 479 TGGGAAGACGAAGTGTTTGAGTATGGTGATGAAACTGATGCGGAGAAAGATGATAGTGAA 538
|||||||| |||||||||||||||||||||| | | | | | ||||| ||||||
Sbjct 479 TGGGAAGAAGAAGTGTTTGAGTATGGTGATG--A-T-A--C---G---GATGAGAGTGAA 526
Query 539 GGGTCTGAATTGAAGGATGGAGAAGTGTTATGTTTCTCCGGT---GA---AGAGG-A-A- 589
|| |||| |||||||||||||||||| ||||||||||| ||| || ||||| | |
Sbjct 527 GGATCTGGATTGAAGGATGGAGAAGTTTTATGTTTCTCGGGTGGAGAGGGAGAGGAAGAG 586
Query 590 G-AG--GATGAAATTGGGGTGAAGGAGAAAGGAGTTCCGGCTGTGATGAGGTGTTTCGAT 646
| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 587 GAAGATGATGAAATTGGGGTGAAGGAGAAAGGGGTTCCGGCGGTGATGAGGTGTTTCGAT 646
Query 647 AGAGCGAAGATATATGTTAGAGCCGGAGATGGAGGGAATGGTGTGGTGGCGTTTAGGAGA 706
||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 647 AGAGCGAAGATATTTGTTAAAGCTGGAGATGGAGGGAACGGTGTGGTGGCGTTTAGGAGA 706
Query 707 GAAAAGTTTGTTCCTTTTGGAGGACCTTCAGGTGGAGATGGAGGGAGAGGAGGGAATGTG 766
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 707 GAAAAGTTTGTTCCTTTTGGAGGACCTTCTGGTGGAGATGGAGGGAGAGGAGGGAATGTG 766
Query 767 TATGTAGAGGTTGATGGGTCTATGAATTCGTTGTTGCCATTTCGCAAGAGTGTGCATTTC 826
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 767 TATGTAGAGGTTGATGGGTCTATGAATTCGTTGTTGCCGTTTCGTAAGAGTGTGCATTTC 826
Query 827 AGGGCGGGACGTGGGGAACATGGGAGAGGGAAGATGCAGAGTGGAGCTAAAGGTGATAAT 886
||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 827 AGGGCGGGAAGAGGGGAACATGGGAGAGGGAAGATGCAGAGTGGAGCTAAAGGAGATAAT 886
Query 887 GTCGTGGTGAAAGTGGCTCCTGGGACGGTGGTTAGACAGGCTAgagaggttgggagtgag 946
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 887 GTTGTGGTGAAAGTGGCTCCTGGGACGGTGGTGAGACAGGCTAGAGAGGTTGGGAGTGAG 946
Query 947 gtggagggtgaggaaggggaggagaaggaggtgCTTTTGGAGTTGTTGCATCCGGGACAG 1006
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 947 GTGGAGGGTGAGGAAGGGGAGGAGAAGGAGGTGCTTTTGGAGTTGCTGCATCCGGGACAG 1006
Query 1007 AGGGCGTTGTTGTTGCCTGGAGGGAGAGGTGGACGAGGGAATGCTTCGTTTAAGTCGGGG 1066
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 AGGGCATTGTTGTTGCCTGGAGGGAGAGGTGGACGAGGGAATGCTTCGTTTAAGTCGGGG 1066
Query 1067 ATGAATAAAGTTCCTAGGATTGCTGAGAATGGCGAAGAAGGTCCTGAAATGTGGCTGGAC 1126
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1067 ATGAATAAAGTTCCTAGGATTGCTGAAAATGGTGAAGAAGGTCCTGAAATGTGGCTGGAC 1126
Query 1127 TTAGAACTGAAACTGGTCGCAGACGTAGGTATTGTGGGTGCTCCAAATGCAGGAAAAAGC 1186
|| |||||||| |||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1127 TTGGAACTGAAGCTGGTCGCAGACGTTGGGATTGTGGGTGCTCCAAATGCAGGAAAGAGC 1186
Query 1187 ACATTGTTGAGCGTGATAAGTGCCGCACAGCCAACCATAGCAAATTACCCATTCACCACA 1246
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 ACGTTGTTGAGCGTGATAAGTGCCGCACAGCCAACCATAGCAAATTACCCATTCACCACA 1246
Query 1247 TTACTTCCCAATCTAGGTGTGGTTTCATTTGATTACGATTCAACAATGGTGGTCGCAGAT 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 TTACTTCCCAATCTAGGTGTGGTTTCATTTGATTACGATTCAACAATGGTGGTCGCAGAT 1306
Query 1307 CTTCCTGGTTTGCTCGAAGGAGCGCACAGAGGCTTCGGTTTAGGCCATGAGTTTCTTCGG 1366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1307 CTTCCTGGTTTGCTCGAAGGAGCGCACAGAGGCTTCGGTTTAGGCCATGAGTTTCTACGA 1366
Query 1367 CACACTGAGAGATGTTCAGCACTGGTACATGTTGTGGATGGTTCAGCTCCACAACCTGAA 1426
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1367 CACACTGAGAGATGTTCAGCACTGGTACATGTCGTGGATGGTTCAGCTCCACAACCTGAA 1426
Query 1427 CTTGAGTTTGAAGCTGTTCGTCTCGAACTCGAACTATTCAGTCCTGAGATCGCCGAGAAG 1486
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1427 CTTGAGTTTGAAGCTGTTCGTCTCGAACTGGAACTATTCAGTCCTGAGATCGCCGAGAAG 1486
Query 1487 CCTTACGTAGTGGCATACAACAAAATGGACCTCCCAGATGCTTACGAGAAGTGGCCAATG 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 CCTTACGTAGTGGCATACAACAAAATGGACCTCCCAGATGCTTACGAGAAGTGGCCAATG 1546
Query 1547 TTTCAAGAAACTCTCCGTGCCCGTGGGATTGAACCTTTTTGTATGAGCGCAGTACAAAGA 1606
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 TTTCAGGAAACTCTTCGTGCCCGTGGGATTGAACCTTTTTGTATGAGCGCAGTACAAAGA 1606
Query 1607 GAAGGTACACATGAAGTAATCTCGTCCGTTTATGAACTCCTGAAGAAGTACAGAGCAGCC 1666
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 GACGGCACACATGAAGTAATCTCGTCCGTTTATGAACTCCTGAAGAAGTACAGAGCAGCC 1666
Query 1667 AATGCAGAACCCAAAGCATTGTTCGATCAAGCAAATGAGAATCTGGACCATGTAGCTAAG 1726
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 AACGCAGAACCCAAAGCATTGTTCGATCAAGCAAATGAGAATCTGGACCATGTAGCTAAG 1726
Query 1727 AAGATTGATAAGGAACGACGAGCAGCCATTAATGAGTTTGAGGTCTTCCGCGATAGCGGT 1786
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1727 AAGATTGATAAGGAACGACGAGCAGCCATTAATGAGTTTGAGATCTTCCGCGATAGCGGT 1786
Query 1787 ACTAGGGCTTGGCATGTAGTTGGAGCCGGGCTTCAACGTTTTGTCCAGATGACTAACTGG 1846
|| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1787 ACCAGGGCTTGGCATGTAGTTGGAGCCGGGCTTCAACGGTTTGTTCAGATGACTAACTGG 1846
Query 1847 AGGTACATGGATTCAGACAAAAGGTTTCAGCATGTACTTGATGCTTGTGGTGTGAATAAA 1906
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1847 AGGTACATGGATTCAGACAAAAGGTTTCAGCATGTACTTGATGCTTGTGGTGTGAACAAA 1906
Query 1907 TCACTGAAGAATATGGGCGTTAAAGAAGGCGATACCGTCATCGTAGGAGAGATGGAGTTG 1966
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1907 TCACTGAAGAATATGGGCGTTAAAGAAGGCGATACCGTGATCGTAGGAGAGATGGAGTTG 1966
Query 1967 ATATGGCATGATTCAGCCAATGGCTCGAGCCGTCCCACAGATTCAAACAAGACTTCGACA 2026
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1967 ATATGGCATGACTCAGCCAATGGCTCGAGCCGTCCTACGGATTCAAACAAGACTTCGACA 2026
Query 2027 GACTCAGTCAGATGGCCTCAATGGAAATGAACCATTTAAGGTCTCTCTTGGTGTT 2081
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2027 GACTCAGTCAGATGGCCTCAATGGAAATGAACCATTTAAGGTCTCTCTTGGAGTT 2081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84103260960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5