BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18580.1
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941384 jgi|Araly1|941384|scaffold_601928.1 2514 0.0
> Ahg941384 jgi|Araly1|941384|scaffold_601928.1
Length=1484
Score = 2514 bits (1361), Expect = 0.0
Identities = 1444/1485 (97%), Gaps = 2/1485 (0%)
Strand=Plus/Plus
Query 139 GGTTGTGACGATCTCCGAGAATGTATAGCGGATCTAGCGATGGTGAGAGTCATGATACAT 198
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGTTGTGACGATCTCCGAAAATGTATAGCGGATCTAGCGATGGTGAGAGTCATGATACAT 60
Query 199 CGACGCAGAGGAAGATCCCACCGGCGTCTTCGATGCTTTGGGTTAGAAATCTACGACGAT 258
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |
Sbjct 61 CGACGCAGAGGAAGATTCCACCGGCGTCTTCGATGCTTTGGGTCAGAAATCTACGGCGGT 120
Query 259 ATATTGGTTCCGGTGCCGGATTAGGATCCGAAGCTCTAATGGAGCTTGAGACGAAGAGAA 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATATTGGTTCCGGTGCCGGATTAGGATCCGAAGCTCTAATGGAGCTTGAGACGAAGAGAA 180
Query 319 TCTTGCTCGAGATTTTTAAAGAGAAGCAACAGAAAAGCCAAGAAGCAGGCACAATACCGA 378
||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 181 TCTTGCTTGAGATATTTAAAGAGAAGCAACAGAAAAGTCAAGAAGCAGGCACTATACCGA 240
Query 379 GTTTCTACAAGAAGAAACCAGAAGAAGGATCTATTAGTCAAAGGGTCCAGAAGCTTGCAA 438
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 GCTTCTACAAGAAGAAACCAGAAGAAGGATCTATTAGTCAAAGGGTCCAGAGGCTTGCAA 300
Query 439 AGTACCGTTTCTTGAAGAAACAATCGGATCTTTTGTTAAACGCTGATGATTTGGCTGCTA 498
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATACCGTTTCTTGAAGAAACAATCGGATCTTTTGTTAAACGCTGATGATTTGGCTGCTA 360
Query 499 TGTGGGTTTGTTTGAGAGAAAATTGTGTGATTGATGATGCCACTGGTGCTGAAAAGATGA 558
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 361 TGTGGGTTTGTTTGAGAGAGAATTGTGTTATTGATGATGCCACTGGTGCAGAAAAGATGA 420
Query 559 ACTATGAAGACTTCTGTCACATTGCCTCTGTATGCACTGAACAAATCGGTCCCAAATGTC 618
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 ACTATGAAGACTTCTGTCACATTGCCTCTGTATGTACTGAACAAATCGGTCCCAAATGTC 480
Query 619 GCCGGTTTTTTAGCCCATCCAATTTCATGAAATTTGAGAAGGATGAGGCTGGGAGGATTG 678
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCCGGTTTTTTAGCCCTTCCAATTTCATGAAATTTGAGAAGGATGAGGCTGGGAGGATTG 540
Query 679 CCATTTTACCGTTTTATCTTTATGTGATGCGCACGGTGTCGCTTACACAAGCTAGGATTG 738
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCATTTTACCATTTTATCTTTATGTGATGCGCACGGTGTCGCTTACACAAGCTAGGATTG 600
Query 739 ATATGAGTGAGCTTGACGAAGACTCTGATGGTTTCCTTCATTCTGATGAAATGGAGTCCT 798
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 601 ATATGAGTGAGCTTGACGAAGACTCTGATGGTTTCCTTCAATCTCATGAAATGGAGGCCT 660
Query 799 ATATTGGTGGTCTAATCCCTAATCTGGCACAACTGAGAGACATGCCTCCGGCCTTTAATC 858
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 661 ATATTGGTGGTCTAATCCCTAATCTGGCACAACTGAGGGACATGCCTCCGGCCTTTAATC 720
Query 859 AAATGTATTGCCGCATAGCTTCACAAAAGTTTTTCTTCTTCTGTGATCCCCATAGGCGAG 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAATGTATTGCCGCATAGCTTCACAAAAGTTTTTCTTCTTCTGTGATCCCCATAGGCGAG 780
Query 919 GAAGAGCCTGCATTAAAAAGATACTGCTCAGTAACTGTCTGCAGGAACTAATGGAATTGC 978
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GAAAAGCCTGCATTAAAAAGATACTGCTCAGTAACTGTCTGCAGGAACTAATGGAATTGC 840
Query 979 ATCAGGAAAGCGAGGAGGAAGTCACAGACACTGAACAGGCAGAAAATTGGTTCTCTTTGA 1038
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 841 ATCAGGAAAGCGAGGAGGAAGTGACAGACACTGAACAGGCAGAAAATTGGTTCTCTTTGA 900
Query 1039 CTTCAGCCCAACGCATATGTGATATGTTCCTCGCACTTGATAAAGATATGAGTGGATCGC 1098
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTTCAGCTCAACGCATATGTGATATGTTCCTCGCACTTGATAAAGATATGAGTGGATCGC 960
Query 1099 TGTGCAAACAAGAACTTAAAGAATATGCTGATGGGACCCTAACTGAGATTTTCATTGAAA 1158
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TGTGCAAACAAGAACTCAAAGAATATGCTGATGGGACCCTAACTGAGATTTTCATTGAAA 1020
Query 1159 GAGTGTTCGATGAGCATGTCCGCCGTGGTAAAATCGTG-GCAGGCAATTCCCGGGAAATG 1217
||||||| ||||||||||| || |||||||||| || | ||||||||||||||||||||
Sbjct 1021 GAGTGTTTGATGAGCATGTTCGGCGTGGTAAAAGCG-GCTCAGGCAATTCCCGGGAAATG 1079
Query 1218 GACTTTGACAGTTTCCTCGATTTTGTTCTTGCTTTGGAGAACAAAGATACTCCAGAGGGT 1277
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1080 GACTTTGACAGTTTCCTCGATTTTGTTCTTGCTTTGGAGAACAAAGACACTCCAGAGGGT 1139
Query 1278 TTGACGTATTTATTCCGTTGCCTTGATCTCCAAGGGAGAGGCTTTCTCACTACTGCTGAT 1337
|| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTAACATATTTATTCCGTTGTCTTGATCTCCAAGGGAGAGGCTTTCTCACTACTGCTGAT 1199
Query 1338 ATTCACTCTCTTTTCAGAGATGTTCACCAGAAATGGATAGAAGGTGGGAACTATGAACTG 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 ATTCACTCTCTTTTCAGAGATGTTCACCAGAAATGGATAGAAGGTGGGAACTATGAACTG 1259
Query 1398 TGCATAGAAGATGTTCGAGACGAGATCTGGGACATGGTGAAACCGTCTGACCCATTAAAG 1457
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TGCATAGAGGATGTTCGGGACGAGATCTGGGACATGGTGAAACCGTCTGACCCATTAAAG 1319
Query 1458 ATCACTCTGGGTGATCTCTTGGGATGTAAACAAGGTGGAACCGTTGCGAGCATGCTTATA 1517
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ATCACCCTGGGTGATCTCTTGGGATGTAAACAAGGTGGAACCGTTGCGAGCATGCTTATA 1379
Query 1518 GATGTGCGTGGCTTCTGGGCTCATGACAACCGTGAGAACCTTCTTCAAGAAGAAGAAGAA 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GATGTGCGTGGCTTCTGGGCTCATGACAACCGTGAGAACCTTCTTCAAGAAGAAGAAGAA 1439
Query 1578 CCACCTGAGGAAGAGTCTCAGTGATAATGTTATTTTCTATGTCTA 1622
|||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1440 CCACCTGAGGAAGAGTCTCAGTGATAATGTTATTTTCTTTGTCTA 1484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67115011690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5