BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18590.1
Length=2719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488743 jgi|Araly1|488743|fgenesh2_kg.6__1877__AT5G18590.2 3461 0.0
> Ahg488743 jgi|Araly1|488743|fgenesh2_kg.6__1877__AT5G18590.2
Length=2588
Score = 3461 bits (1874), Expect = 0.0
Identities = 2095/2201 (95%), Gaps = 17/2201 (1%)
Strand=Plus/Plus
Query 391 AGGATTTAT-TTT-TTCTGGGGATTTCTGAG--ATTGGAAGAAAATGTTCAGCTTTTCAA 446
||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 365 AGGGTTTATATTTCTTCTGGGGATTTCTGAGAAATTGGAAGAAAATGTTCAGCTTTTCTA 424
Query 447 AGAGGCGCATGAGACTTGGCAGAGTTAAGAAGGTACAGCTCTCGGATTCTGTTCAAGGAT 506
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 425 AGAGGCGCATGAGACTTGGCAGGGTTAAGAAGGTACAGCTCTCGGATTCTGTTCAAGGAT 484
Query 507 ATAAGAGTCCTTTACGAGTGACCAAAC-GCGCTGATAGCTCTAGTAATGAAGCTG-CTGT 564
||||||||||||| ||||| ||||||| | ||||||| ||||||||||||||||| || |
Sbjct 485 ATAAGAGTCCTTTGCGAGTAACCAAACTG-GCTGATAACTCTAGTAATGAAGCTGCCT-T 542
Query 565 TGCTGCAACTAGTTATTCTGATGAACTTGATTTCCAGCCTTCATCAGGGAATTCCGAAAA 624
|||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||
Sbjct 543 GGCTGCAACTAGTTATTCTGATGAATTTGATTTCCAGCCTTCATCGGGGAATTCTGAAAA 602
Query 625 TTGGATGGTGTTATCGGTTAATGGCGAAAAACCCGCTCCACGCTTTAATCATGCAGCGGC 684
||||||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||
Sbjct 603 TTGGATGGTGTTATCGGTTGGTGGGGAAAAACCCGCTCCACGCTTTAATCATGCGGCCGC 662
Query 685 GACTATTGGGAACAAAATGATAGTAGTTGGTGGAGAGTCTGGTAGTGGCTTGTTGGATGA 744
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 663 GGCTATTGGGAACAAAATGATAGTAGTTGGTGGAGAATCTGGTAGTGGCTTGTTGGATGA 722
Query 745 TGTACAGGTGCTTAACTTTGATTCATGTACATGGTCCACCGCATCTTCAAAAGTTTACTT 804
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 723 TGTACAGGTGCTTAACTTTGATTCATGTACATGGTCCACCGCGTCTTCAAAAGTTTACTT 782
Query 805 ATCGCCGAGTAGTCTTCCTCTCATGATCCCTGCTTGGAAAGGCCATTGCTTGGTCTCTTG 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 ATCGCCGAGTAGTCTTCCTCTCATGATCCCTGCTTGGAAAGGCCATTGCTTGGTCTCTTG 842
Query 865 GGGTAAAAAAGTGCTGTTGGTGGGTGGAAAAACAGATCCTAGCAGTGATAGAGTTTCAGT 924
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 843 GGGTAAAAAAGTGCTATTGGTGGGTGGAAAAACAGATCCTTCCAGTGATAGAGTTTCAGT 902
Query 925 GTGGGCATTTGATACTGATTCGGAATGCTGGTCACTAATGGATGCAAAAGGAGACTTACC 984
|||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 903 TTGGGCATTTGATACTGATTCGGAATGCTGGTCGCTTATGGATGCAAAAGGAGACGTACC 962
Query 985 GGTCAGTCGCAGCGGTCACACAGTGGTGAGGGCTAGTTCGGTATTGATACTATTCGGTGG 1044
||||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||| ||
Sbjct 963 GGTCAGTCGCAACGGTCACACGGTGGTGAGGGCCAGTTCGGTATTGATACTTTTCGGCGG 1022
Query 1045 TGAAGACTCTAAGAAGAGGAAACTAAACGATCTTCATATGTTTGATCTCAAATCATCCAC 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TGAAGACTCTAAGAAGAGGAAACTAAACGATCTTCATATGTTTGATCTCAAATCATCCAC 1082
Query 1105 ATGGCTTCCTCTTAATTGCACAGGAACACGGCCGTGTGCAAGGTCACATCATGTAGCCAC 1164
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1083 ATGGCTTCCTCTTAATTGCACAGGAACACGGCCGTGTGCAAGATCACATCATGCAGCCAC 1142
Query 1165 GTTATTCGACGACAAAATTCTGTTTGTGTTTGGAGGTTCGGGCAAGAACAAAACACTAAA 1224
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1143 ACTATTCGACGACAAAATTCTCTTTGTGTTTGGAGGTTCGGGCAAGAACAAAACACTTAA 1202
Query 1225 TGACTTATACTCACTCGACTTTGAAACGATGGTATGGTCAAGAATAAAGATAAGAGGATT 1284
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1203 TGACTTATACTCACTTGACTTTGAAACGATGGTATGGTCAAGAATAAAAATAAGAGGATT 1262
Query 1285 TCACCCATCACCAAGAGCGGGTAGTTGTGGAGTTCTTTGCGGTACTAAATGGTATATAAC 1344
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 TCACCCGTCTCCAAGAGCGGGTAGTTGTGGAGTTCTTTGCGGTACTAAATGGTATATAAC 1322
Query 1345 CGGAGGAGGAAGCAGAAAGAAGAGACATGCGGAAACATTGGTCTTCGATATCCTTAAGGT 1404
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1323 TGGAGGAGGAAGCAGAAAGAAGAGACATGCGGAAACATTGGTCTTCGATATCTTTAAGGT 1382
Query 1405 CGAGTGGTCTGTAGCAAGCATCTCCTCTCAATCTTCTG-TCACATCCAACAAGGGATTTA 1463
||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||
Sbjct 1383 CGAGTGGTCTGTAGCAAACATCTCCTCTCAATCTTC-GATCACATCCAACAAGGGATTTA 1441
Query 1464 GTCTAGTTCTTCTGCAACACAAGGATAAAGATTTCCTTGTAGCTTTTGGAGGAACGAAAA 1523
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1442 GTCTAGTTCTTCTCCAACACAAGGATAAAGATTTCCTCGTAGCTTTTGGAGGAACAAAAA 1501
Query 1524 AAGATCCTTCAAATCAGGTCGATGCTTTTACCATTGACAAGAACAAGAGTGAATCACCAA 1583
||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||
Sbjct 1502 AAGATCCTTCAAATCAGGTCGCGGCTTTTATCATTGACAAGAACAAGAGTGAATCGCCAT 1561
Query 1584 CACATCCGCAAACAACTTCCAAGAAAAACCCCGGCCGGTTACTGTTTGGAAAAAGATCTT 1643
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1562 CACATCCTCAAACAACTTCCAAGAAAAACCCCGGCCGGTTACTGTTTGGAAAACGATCTT 1621
Query 1644 CTTCCTCGGCAGTTTTAACCTCTGATGAATCGGTTAAAGCCTCTTCACAGAGGCTGATTG 1703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 CTTCCTCGGCAGTTTTAACCTCTGATGAATCGGTTAAAGCCTCTTCACAGAGGCTGATTG 1681
Query 1704 ATTCAGTTGCCAGACAGAAACTTGCTTCAGCCATTGAAGAGCATGGTGGCTCTGGTAGAA 1763
||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1682 ATTCAGTCGCCAGACAGAAACTTGCTTTAGCCATTGAAGAACATGGTGGCTCTGGTAGAA 1741
Query 1764 GGTCTTTATCAGAGATTGCTTTCGGTGATCATCGTAACCCACCTTCTGGAAATGTCTCTT 1823
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1742 GGTCTTTATCAGAGATTGCTTTCGGTGATCAACGTAACCCATCTTCTGGAAATGTCTCTT 1801
Query 1824 TGCGTAAACAGTTTAGCACCGAAGAGGAATACAGAGCGGTGATTGAACCCGCAAAGTGTT 1883
||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |
Sbjct 1802 TGCGTAAACAGTTTAGCACTGAAGAGGAGTACAGAGCGGTAATTGAACCCGCAAAGTGCT 1861
Query 1884 CAGAAGAAGA-CATTTCCGTGCCTCCTCCGACCACAGATGACAATACTGGAGGAG---CA 1939
|| || |||| | |||||||||||| ||||||| |||||||||||| |||||||| ||
Sbjct 1862 CACAAAAAGAAC-TTTCCGTGCCTCTTCCGACCGCAGATGACAATAATGGAGGAGGAGCA 1920
Query 1940 AAGATTACAGCAGAGAAAACACTTTCTATGGTTTCTGACCGTGAAATCTTAAGTCTCCAG 1999
|||||||||||||||||||||||||| |||||||| ||||||||| |||||| |||||||
Sbjct 1921 AAGATTACAGCAGAGAAAACACTTTCGATGGTTTCAGACCGTGAAGTCTTAAATCTCCAG 1980
Query 2000 AAGCAATGCTCTGAAACATATCCTTTAGAAAACGTTGATGGCGCCTTGATATTCCAAGAA 2059
||||||||||||||||||| |||||||||||| || |||||| ||||| ||||||| |||
Sbjct 1981 AAGCAATGCTCTGAAACATTTCCTTTAGAAAATGTCGATGGCACCTTGGTATTCCAGGAA 2040
Query 2060 ATGGATAATATCAACTTTGCAGGATCAGCGTCCTCATCGAGCGTGTACCAATTCCATGAA 2119
|||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 2041 ATGGATAATATCAATTTTGAAGGATCAGCGTCATCATCGAGCGTGTACCAATTCCATGAG 2100
Query 2120 GCGAAAATGACGGCTCTTATAAGAAGAAATGGGATTCTGGAAGGGCAGTTAGAAGCAGCA 2179
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2101 GCGAAAATGACTGCTCTTATAAGAAGAAATGGGATTCTAGAAGGGCAGTTAGAAGCAGCA 2160
Query 2180 TTGGCGGGAAGAGAGGCGGCTGAGAGGAATGTGTCGGTTGCGTTGAGGAGCAAACAAGAG 2239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 TTGGCGGGAAGAGAGGCGGCTGAGAGGAATGTGTCGGTTGCGTTGAGGAGCAAACAAGAG 2220
Query 2240 ACTGATAAAAAG-TTATCTGACGCCATGAGAGATGTTGAATTGCTTAAGGAGAAGCTGAC 2298
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2221 ACTGATAAAAAGCTT-TCTGACGCCATGAGAGATGTTGAATTGCTTAAGGAGAAGCTTAC 2279
Query 2299 CGGGTTAGAGCTCGCTCAAGAGGAAGCTAATAGTTTGTCAAACATGGTTCACTCCGACAA 2358
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2280 CGGGTTAGAGCTTGCTCAAGAGGAAGCTAATAGTTTGTCAAACATGGTTCACTCCGACAA 2339
Query 2359 TGTCAGGCTTGAGCATGATGTAGCGTTCCTCAAAGCTGTCCTAGACGATACACAAAAGGA 2418
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2340 TGTCAGGCTCGAGCATGATGTAGCGTTCCTAAAAGCTGTCCTAGACGATACACAAAAGGA 2399
Query 2419 GTTGCATTCAACAAGAGGAGTTCTTGCAGGAGAAAGAGCAAGAGCGTTCCAGTTGCAGGT 2478
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2400 GTTGCATTCAACAAGAGGAGTCCTTGCAGGAGAAAGAGCAAGAGCGTTCCAGTTGCAGGT 2459
Query 2479 TGAAGTGTTTCATCTGAAGCAAAGATTACAATCTCTAGAGAACAGAGCTGCTACACCCAG 2538
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2460 TGAAGTGTTTCATCTGAAGCAAAGATTACAATCTCTGGAGAACAGAGCTGCTACACCCAG 2519
Query 2539 AAAGCCTTTCCATGTCTAAACACAGACCAGAGACAACACGA 2579
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2520 AAAGCCTTTCCATGTCTAAACACAGACCAGAGACAACACGA 2560
Score = 316 bits (171), Expect = 4e-85
Identities = 286/336 (85%), Gaps = 30/336 (9%)
Strand=Plus/Plus
Query 76 tctctttctctctct-gtctctagtctctactctcGAACGGGC-----TAAGCTCAGATC 129
||||| ||||||||| ||||||| ||||||||||||||| ||| ||||||||||||
Sbjct 1 TCTCTCTCTCTCTCTAGTCTCTACTCTCTACTCTCGAAC-GGCTAAAGTAAGCTCAGATC 59
Query 130 ATTACAAGATTCGC--TTT--TGTGC---T----GAACTTGGTCCCATTCATTAGTTATT 178
|||||||||||||| ||| ||| | | ||||||||||||||||||||||||||
Sbjct 60 ATTACAAGATTCGCTTTTTACTGTTCAAATACACGAACTTGGTCCCATTCATTAGTTATT 119
Query 179 TGCTTAAAGACAACATTTTTAT--AT--GCTTCCGTTAGCTAAATCCATCACTCCCCCCT 234
|||||||||||||||||||||| || |||||||| ||||||||||||| ||| || |
Sbjct 120 TGCTTAAAGACAACATTTTTATTTATATGCTTCCGTAAGCTAAATCCATCT-TCCTCC-T 177
Query 235 TCAATCATTTCCCTGCTCTGCTGGCCCCAGAAACAGCTTGCTAGGATTCACTACGACGTC 294
|||||||||| ||||| |||||||||||| ||||||||||||| ||| |||||| ||
Sbjct 178 TCAATCATTTTCCTGC---GCTGGCCCCAGA--CAGCTTGCTAGGACTCAATACGACTTC 232
Query 295 GTTTCGGGTTCGTCTCCAGCTGTGGATAATGGCTATTCTCTGAAATTGATTCTATTCACT 354
|||| || |||||| ||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 233 GTTTAGG-TTCGTCACCAGCTGTGGATAATGGCTATTCCCTGATTTTGATTCTATTCACT 291
Query 355 ATTTTGTTACTGGGGATTTTCTCAGCAAACCAAAAC 390
||||| |||||||| || || || ||||||||||||
Sbjct 292 ATTTTTTTACTGGGAATATTATCGGCAAACCAAAAC 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102577029785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5