BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18600.1
Length=697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488744 jgi|Araly1|488744|fgenesh2_kg.6__1878__AT5G18600.1 911 0.0
> Ahg488744 jgi|Araly1|488744|fgenesh2_kg.6__1878__AT5G18600.1
Length=604
Score = 911 bits (493), Expect = 0.0
Identities = 574/611 (94%), Gaps = 14/611 (2%)
Strand=Plus/Plus
Query 18 ACAATACCCTTATTCTCCACGTAGAATCAAGAGTACTTCTTTTCCTTAAATCTCTACaaa 77
|||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1 ACAAAACCCTTATTCTCCACGTAGAACCAAGAGT-TTTCTTTTCCTTAAATCTCTACAAA 59
Query 78 aaaaaaaTCGATCTATATACTAAGAG-ATCATAAATATAGATTCATAGACCTATTTAAGA 136
||||||||||||| |||| ||||| | |||| |||| |||||||| ||||||||||||
Sbjct 60 AAAAAAATCGATC--TATA--AAGAGCA-CATACATATTGATTCATAAACCTATTTAAGA 114
Query 137 AACGACTTAAGAAGCTGTTGGATC--ATATACCATATAAAATAGCAATGGATATGATAAC 194
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 115 AACGACTTAAGAAGCTGTTGGATCATATATACCATATAAAATAGCTATGGATATGATAAC 174
Query 195 GAAGATGGTGATGGAGAGACCGGTGGTGATTTACAGCAAGAGCTCTTGCTGTATGTCTCA 254
||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct 175 GAAGATGGTGATGGAGAGACCGGTGGTTATATACAGCAAGAGTTCTTGTTGTATGTCTCA 234
Query 255 CACGATCAAGACTTTGCTCTGCGATTTCGGAGCAAATCCAGCGGTTTACGAGCTGGATGA 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 CACGATCAAGACTTTGCTCTGCGATTTCGGAGCAAATCCAGCGGTTTACGAGCTGGATGA 294
Query 315 GATATCTAGAGGGAGGGAGATCGAGCAGGCGTTGTTGCGGCTCGGGTGTAGCCCCGCAGT 374
| || ||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 295 GCTACCTAGAGGGAAGGATATCGAGCGGGCGTTGTTGCGGCTCGGGTGTAGCCCCGCAGT 354
Query 375 TCCGGGCG-TTTTCATTGGTGGAGAGTTGGTCGGTGGAGCCAACGAGGTCATGAGTCTAC 433
||||| || ||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 355 TCCGG-CGGTTTTCATCGGTGGAGAGTTGGTCGGTGGAGCCAATGAGGTCATGAGTCTAC 413
Query 434 ATCTTAACGGATCCTTGATTCCCATGCTTAAGCGGGCTGGTGCATTGTGGGTTTGACTTA 493
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 414 ATCTTAACGGATCCTTGATTCCTATGCTTAAGCGGGCTGGTGCATTGTGGGTTTGACTTA 473
Query 494 TCATGTTTTTAACTAGTTTACTTAACACTAAGTTAAGTACGCAGAATAA--TTTTAACAC 551
| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 474 TTATATTTTTAACTAGTTTACTTAACACTAAGTTAAGTACGCAGAATAAAATTTTAACAC 533
Query 552 ATCTATGATCT-TGGCATGGTGATATGATGAGTCCACGTCGGATCAATAATCAGTGTGTT 610
|||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 534 ATCTATGAGCTATGGCATGGTGATATGATAAGTCCACGTCGGATCAATAATCAGTGTGTT 593
Query 611 GTCtttttttt 621
|||||||||||
Sbjct 594 GTCTTTTTTTT 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25618600224
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5