BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18610.1
Length=2005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941387 jgi|Araly1|941387|scaffold_601931.1 2712 0.0
> Ahg941387 jgi|Araly1|941387|scaffold_601931.1
Length=1585
Score = 2712 bits (1468), Expect = 0.0
Identities = 1544/1582 (98%), Gaps = 0/1582 (0%)
Strand=Plus/Plus
Query 62 CGAGGGACTTAGCTTCGGAGATGAGTGGGTGTTTGCCTTGTTTTGGATCTTCGGCTAAAG 121
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 CGAGGGACTTAGCTTCGGAGATGAGTGGGTGTTTGCCTTGCTTTGGATCTTCGGCTAAAG 60
Query 122 ACGCTGCTTCTAAAGATTCGGTGAAGAAGGAACTTTCAGCTAAAGACGGCTCAGTTACTC 181
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 61 ACGCTGCTTCTAAAGATTCTGTGAAGAAGGAACTTTCAGCTAAAGACGGCTCTGTTACTC 120
Query 182 AGTCTCACCATATCAGCTTAGATAAATCAAAGTCTCGACGAGGTCCTGAACAGAAGAAGG 241
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 AGTCTCACCATATCAGCTTAGATAAATCAAAGTCGCGACGAGGTCCTGAACAGAAGAAGG 180
Query 242 AGCTAACTGCTCCAAAAGAAGGGCCTACTGCGCATATTGCTGCACAAACCTTTACTTTCC 301
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 181 AGCTAACTGCTCCAAAAGAAGGGCCTACCGCGCATATCGCTGCACAAACGTTTACTTTCC 240
Query 302 GAGAGTTAGCTGCCGCCACTAAAAACTTTCGACCGGAATGTCTTCTTGGAGAAGGAGGTT 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGAGTTAGCTGCTGCCACTAAAAACTTTCGACCGGAATGTCTTCTTGGAGAAGGAGGTT 300
Query 362 TCGGACGTGTTTACAAAGGTCGTCTAGAGACCACAGGACAGATAGTAGCTGTTAAACAGC 421
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCGGACGTGTTTACAAGGGTCGTCTAGAGACCACAGGACAGATAGTAGCTGTTAAACAGC 360
Query 422 TTGATCGAAACGGTCTACAAGGAAACAGAGAGTTTCTTGTAGAGGTTCTTATGCTGAGCC 481
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 TTGATCGAAACGGTCTACAAGGAAACAGAGAGTTTCTTGTAGAAGTTCTTATGCTGAGCC 420
Query 482 TTCTGCATCATCCCAATCTTGTGAATTTGATTGGTTATTGTGCTGATGGGGACCAGCGTC 541
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 TTCTGCATCATCCCAATCTTGTGAATTTGATTGGTTATTGTGCTGATGGTGACCAGCGTC 480
Query 542 TTCTTGTGTATGAGTATATGCCACTAGGATCATTGGAGGATCATCTACACGATCTTCCAC 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTCTTGTGTATGAGTATATGCCACTAGGATCATTGGAGGATCATCTACACGATCTTCCAC 540
Query 602 CTGATAAAGAGCCTCTAGACTGGAGTACTAGAATGACAATAGCGGCAGGAGCAGCAAAGG 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTGATAAAGAGCCTCTAGACTGGAGTACTAGAATGACAATAGCGGCAGGAGCAGCAAAGG 600
Query 662 GACTGGAGTATCTGCATGATAAAGCGAATCCGCCTGTGATCTACAGAGACCTGAAATCAT 721
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 GACTGGAGTATTTGCATGATAAAGCGAACCCGCCTGTGATCTACAGAGACCTGAAATCAT 660
Query 722 CCAACATTCTTCTCGGTGATGGCTATCACCCAAAGTTATCTGATTTTGGGTTAGCTAAGT 781
||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 661 CCAACATTCTTCTTGGTGATGGTTATCACCCAAAGTTATCTGATTTCGGGTTAGCTAAGT 720
Query 782 TAGGTCCCGTGGGCGATAAAACACATGTGTCAACTCGTGTGATGGGCACATATGGTTATT 841
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 721 TAGGTCCCGTGGGCGATAAAACACACGTGTCAACTCGTGTGATGGGCACATATGGTTATT 780
Query 842 GTGCACCGGAATATGCCATGACAGGGCAACTCACATTGAAATCCGATGTTTATAGCTTTG 901
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 781 GTGCACCGGAATATGCCATGACCGGGCAACTCACATTGAAATCCGATGTTTATAGCTTTG 840
Query 902 GGGTTGTGTTTCTCGAGCTCATCACGGGTCGAAAAGCTATTGATAATGCTCGAGCACCCG 961
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GCGTTGTGTTTCTTGAGCTCATCACGGGTCGAAAAGCTATTGATAATGCTCGAGCACCCG 900
Query 962 GAGAGCACAACCTTGTCGCATGGGCTAGGCCGTTGTTCAAAGATCGTAGAAAGTTTCCGA 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 901 GAGAGCACAACCTTGTCGCATGGGCTAGGCCGTTGTTCAAAGATCGTAGAAAGTTCCCGA 960
Query 1022 AGATGGCGGATCCATCGCTGCAAGGGCGGTATCCAATGCGTGGTCTATATCAAGCACTTG 1081
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 961 AGATGGCGGATCCATCACTGCAAGGGCGGTACCCAATGCGTGGTCTATATCAAGCACTTG 1020
Query 1082 CAGTTGCAGCAATGTGTTTACAGGAACAAGCAGCGACAAGACCACTGATTGGCGACGTGG 1141
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1021 CAGTTGCAGCAATGTGTTTACAGGAACAAGCAGCGACAAGACCGCTGATTGGCGACGTGG 1080
Query 1142 TGACAGCTCTAACATACTTAGCTTCGCAAACGTTTGACCCAAACGCACCAAGCGGTCAAA 1201
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TGACAGCTCTAACTTACTTAGCTTCGCAAACGTTTGACCCAAACGCACCAAGCGGTCAAA 1140
Query 1202 ACAGTAGAAGTGGGAGTGGGCCACCATTTATCAGAACAAGGGATGATCGGAGGAGCTTGG 1261
|||||||||| || || ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1141 ACAGTAGAAGCGGTAGCGGGCCGCCATTTATCAGAACGAGGGATGATCGGAGGAGCTTGG 1200
Query 1262 GAGATGGGAGTAGCTTGGATAGTCCTGCAGAGACTCGGAGTCGGTTAGGGTCACCAGCCA 1321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1201 GAGATGGGAGTAGCTTGGATAGTCCTGCAGAGACTCGGAGTCGGTTAGGGTCACCAGCGA 1260
Query 1322 CTCACAAGAACTCTCCTGATTACAGAAGAAGGGATATGGTGAGGGAAGTCAATGCAGGAT 1381
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CTCACAAGAACTCTCCTGATTACAGAAGAAGGGATATGGTGAGGGAAGTCAATGCAGGAA 1320
Query 1382 CAGAAGGTGGGAGCGAGACAGGAGGCGGGTCAGGTAGAAAATGGGGATTAAGCGATTTGG 1441
|||||||||| |||| | |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1321 CAGAAGGTGGAAGCGGGTCAGGAGGCGGGTCAGGGAGAAAATGGGGATTAAGCGATTTGG 1380
Query 1442 AAGGGCAAGAATCACAGAGAGGGAGCCCGGCGAGTGTTGGGAGATCATCGAGAGGCACTC 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AAGGGCAAGAATCACAGAGAGGGAGCCCGGCGAGTGTTGGGAGATCATCGAGAGGCACTC 1440
Query 1502 CGAGGAACCGAGATTTAGATAGAGAGAGGGCGGTGGCGGAAGCAAAGGTGTGGGGAGAGA 1561
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CAAGGAACCGAGATTTAGATAGAGAGAGGGCGGTGGCGGAAGCAAAGGTGTGGGGAGAGA 1500
Query 1562 ATTGGAGGGAGAGGAAGAGAGCTACCAATGGACCGGGCAGCTTTGATAGTACAAATGACT 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 ATTGGAGGGAGAGGAAGAGAGCTACCAATGGACCGGGCAGCTTTGATAGTACAAATGACT 1560
Query 1622 GAAATGGGAAAGATGAAAGCTT 1643
||||||||||||| ||||||||
Sbjct 1561 GAAATGGGAAAGAGGAAAGCTT 1582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75380594855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5