BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18620.2
Length=3600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488746 jgi|Araly1|488746|fgenesh2_kg.6__1880__AT5G18620.2 5962 0.0
Ahg477943 jgi|Araly1|477943|fgenesh2_kg.3__644__AT3G06400.1 3703 0.0
> Ahg488746 jgi|Araly1|488746|fgenesh2_kg.6__1880__AT5G18620.2
Length=3596
Score = 5962 bits (3228), Expect = 0.0
Identities = 3487/3609 (97%), Gaps = 30/3609 (1%)
Strand=Plus/Plus
Query 1 TTGTTGCTTTTAATTTCACTTTTGTTTA-TTT-ACTAACCAAAGC--aaaaaaaaCTCAG 56
|||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||
Sbjct 1 TTGTTGCTTTTAATTTCACTTTTGTTTATTTTCACTAACCAAAGCAAAAAAAAAACTCAG 60
Query 57 GAACCCTCGATTCGATCTCTCAGACGAAATCAGGATTCGTAGAGGCGCGTCGATGGCTAG 116
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAACCCTCGATTCGA--TCTCAGACGAAATCAGGATTCGTAGAGGCGCGTCGATGGCTAG 118
Query 117 AGCTTCGAAGCGGGAAGTTTCTTCAGACGAGGCTTACTCGTCGGAGGAAGAGGAGCAAGT 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGCTTCGAAGCGGGAAGTTTCTTCAGACGAGGCTTACTCGTCGGAGGAAGAGGAGCAAGT 178
Query 177 TAACGATCAGGCCAATGTGGAAGAAGATGATGACGAGCTCGAGGCCGTCGCTCGCTCTGC 236
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 179 TAACGATCAGGCCAATGTGGAAGAAGATGATGAAGAGCTCGAGGCCGTCGCTCGCTCTGC 238
Query 237 GGGCTCTGACGAGGAAGATGTTGCGCCCGACGAAGCACCTGTCTCTGACGACGAGGTTGT 296
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 239 GGGTTCTGACGAGGAAGATGTTGCGCCCGACGAAGCACCTGTCTCTGACGACGATGTTGT 298
Query 297 CCCCGTAGAAGATGACGCTGAAGAGGACGAAGAAGACGAGGAGAAAGCTGAGATCAGCAA 356
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 299 CCCCGTAGAAGATGACGCTGAAGAGGACGAAGAAGACGAGGAAAAAGCTGAGATCAGCAA 358
Query 357 ACGTGAGAAGGCTAGACTCAAAGAAATGCAGAAGATGAAGAAGCAGAAAATTCAGCAAAT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ACGTGAGAAGGCTAGACTCAAAGAAATGCAGAAGATGAAGAAGCAGAAAATTCAGCAAAT 418
Query 417 CTTAGACTCCCAAAATGCTTCCATAGATGCTGATATGAACAATAAAGGAAAGGGGAGGA- 475
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 419 TTTAGACTCCCAAAATGCTTCCATAGATGCAGATATGAACAATAAAGGAAAGGGGA-GAT 477
Query 476 TAAAGTATCTTCTGCAGCAAACTGAGTTATTTGCACATTTTGCTAAAAGTGACCCGTCTC 535
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TGAAGTATCTTCTGCAGCAAACTGAGTTATTTGCACATTTTGCTAAAAGTGACCCGTCTC 537
Query 536 CGTCCCAGAAGAAGGGAAAAGGAAGGGGTCGCCATTCTTCCAAACTAACCGAGGAAGAGG 595
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 538 CGTCCCAGAAGAAGGGGAAAGGAAGGGGTCGCCATTCTTCCAAACTAACTGAGGAAGAGG 597
Query 596 AAGATGAAGAGTGTTTAAAAGAAGAAGAGGGTGGTATAGTTGGATCTGGAGGCACACGGT 655
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 598 AAGATGAAGAGTGTTTAAAAGAAGAAGAGGGTGGTACAGCTGGATCTGGAGGCACACGGT 657
Query 656 TGCTCACTCAGCCCGCTTGTATTCAGGGGAAGTTAAGAGATTACCAATTAGCTGGTTTAA 715
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 658 TGCTCACACAGCCCGCTTGTATTCAGGGAAAGTTAAGAGATTACCAATTAGCTGGTTTAA 717
Query 716 ACTGGCTCATTCGGCTGTATGAGAACGGCATAAATGGGATTCTTGCAGATGAAATGGGTC 775
|||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 718 ACTGGCTCATTCGGTTGTACGAGAATGGCATAAATGGGATTCTTGCGGATGAAATGGGTC 777
Query 776 TGGGGAAGACGCTTCAAACCATTTCTTTGTTGGCTTACCTGCATGAGTACAGGGGAATTA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TGGGGAAGACGCTTCAAACCATTTCTTTGTTGGCTTACCTGCATGAGTACAGGGGAATTA 837
Query 836 ATGGCCCTCATATGGTAGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTC 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATGGCCCTCATATGGTAGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTC 897
Query 896 GCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGAAGAC 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 898 GCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGGAGAC 957
Query 956 ATATTCGTGAAGAACTGCTAGTTGCAGGGAAATTCGACATTTGTGTAACAAGCTTTGAGA 1015
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 958 ATATTCGTGAAGAACTGCTAGTTGCAGGGAAATTCGACATTTGTGTTACAAGCTTTGAGA 1017
Query 1016 TGGCTATCAAAGAGAAGACAACATTGCGCCGTTTTAGCTGGCGATATATAATCATTGATG 1075
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TGGCTATCAAAGAGAAGACATCATTGCGCCGTTTTAGCTGGCGATATATAATCATTGATG 1077
Query 1076 AAGCACATCGAATTAAAAATGAGAATTCACTCCTTTCGAAAACCATGAGACTTTTCAGCA 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AAGCACATCGAATTAAAAATGAGAATTCACTCCTTTCGAAAACCATGAGACTTTTCAGCA 1137
Query 1136 CCAACTATCGGCTTCTTATCACGGGAACCCCCCTTCAGAATAATCTCCATGAATTGTGGG 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CCAACTATCGGCTTCTTATCACGGGAACCCCCCTTCAGAATAATCTCCATGAATTGTGGG 1197
Query 1196 CCCTTCTCAATTTTCTTCTCCCTGAGGTTTTTAGTTCAGCAGAAACTTTTGACGAGTGGT 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CCCTTCTCAATTTTCTTCTCCCTGAGGTTTTTAGTTCAGCAGAAACTTTTGACGAGTGGT 1257
Query 1256 TTCAAATTTCTGGTGAAAACGACCAGCAAGAAGTTGTTCAACAACTTCACAAGGTTCTGC 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TTCAAATTTCTGGTGAAAACGACCAGCAAGAAGTTGTTCAACAACTTCACAAGGTTCTGC 1317
Query 1316 GACCATTTCTTCTTCGGAGGTTAAAATCAGATGTAGAGAAAGGCTTACCTCCAAAAAAGG 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GACCATTTCTTCTTCGGAGGTTAAAATCAGATGTAGAGAAAGGCTTACCTCCAAAAAAGG 1377
Query 1376 AGACAATACTCAAAGTTGGCATGTCTCAAATGCAAAAACAGTACTACAAGGCTTTACTGC 1435
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AGACAATACTTAAAGTTGGCATGTCTCAAATGCAAAAACAGTACTACAAGGCTTTACTGC 1437
Query 1436 AGAAGGATCTTGAAGTGGTTAATGGTGGTGGAGAACGCAAACGTCTGTTGAACATAGCAA 1495
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1438 AGAAGGATCTTGAAGTGGTTAATGGTGGTGGAGAACGTAAACGTCTGTTGAACATAGCAA 1497
Query 1496 TGCAATTGCGGAAATGCTGCAATCACCCTTATCTCTTCCAGGGTGCGGAGCCTGGTCCCC 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TGCAATTGCGGAAATGCTGCAATCACCCTTATCTCTTCCAGGGTGCGGAGCCTGGTCCCC 1557
Query 1556 CATATACTACAGGAGATCACCTTGTAACAAACGCAGGTAAGATGGTTCTCTTAGATAAAT 1615
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1558 CATATACCACAGGAGATCACCTTGTAACAAATGCAGGTAAGATGGTTCTCTTAGATAAAT 1617
Query 1616 TGCTACCTAAGTTGAAGGATCGAGATTCAAGGGTTCTGATATTTTCTCAGATGACAAGGC 1675
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TGCTACCCAAGTTGAAGGATCGAGATTCAAGGGTTCTGATATTTTCTCAGATGACAAGGC 1677
Query 1676 TTTTGGATATTCTCGAGGATTACCTAATGTATCGTGGTTACCAGTACTGCCGTATTGATG 1735
||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1678 TTTTGGATATTCTTGAGGATTATCTAATGTATCGCGGTTACCAGTACTGCCGTATTGATG 1737
Query 1736 GAAATACTGGTGGTGACGAACGAGATGCTTCCATAGAAGCCTATAACAAGCCAGGAAGTG 1795
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1738 GAAATACTGGTGGTGACGAACGAGATGCTTCCATAGAAGCCTACAACAAGCCAGGAAGTG 1797
Query 1796 AGAAATTCGTTTTCTTGTTATCCACTAGAGCTGGAGGACTTGGTATCAATCTTGCTACTG 1855
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 AGAAATTTGTTTTCTTGTTATCCACTAGAGCTGGAGGACTTGGTATCAATCTTGCTACTG 1857
Query 1856 CAGATGTTGTGATCCTCTATGATAGTGACTGGAACCCTCAAGTTGACTTGCAAGCTCAGG 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 CAGATGTTGTGATCCTCTATGATAGTGACTGGAACCCTCAAGTTGACTTGCAAGCTCAGG 1917
Query 1916 ATCGTGCACATAGGATTGGTCaaaaaaaaGAAGTTCAAGTGTTCCGGTTCTGCACCGAGA 1975
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1918 ATCGTGCACATAGGATTGGTCAAAAAAAAGAAGTTCAAGTATTCCGGTTCTGCACCGAGA 1977
Query 1976 ATGCTATTGAGGCTAAAGTCATTGAGAGAGCTTACAAGAAGTTGGCACTTGATGCTCTGG 2035
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 ATGCTATTGAGGCGAAAGTCATTGAGAGAGCTTACAAGAAGTTGGCACTTGATGCTCTGG 2037
Query 2036 TTATTCAGCAAGGGAGATTGGCAGAACAGAAAACTGTTAATAAGGATGAGTTGCTTCAAA 2095
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 TTATTCAGCAAGGGCGATTGGCAGAACAGAAAACTGTTAATAAGGATGAGTTGCTTCAAA 2097
Query 2096 TGGTGAGATATGGTGCTGAAATGGTGTTTAGTTCTAAAGATAGCACAATTACGGATGAGG 2155
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2098 TGGTGAGATATGGTGCTGAAATGGTGTTTAGTTCTAAAGATAGCACAATTACAGATGAGG 2157
Query 2156 ATATTGACAGAATCATTGCCAAAGGAGAAGAGGCAACGGCTGAACTTGATGCCAAGATGA 2215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 ATATTGACAGAATCATTGCCAAAGGAGAAGAGGCAACGGCTGAACTTGATGCCAAGATGA 2217
Query 2216 AGAAATTTACTGAAGATGCAATACAGTTTAAAATGGATGACAGTGCTGACTTTTATGATT 2275
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218 AGAAATTCACTGAAGATGCAATACAGTTTAAAATGGATGACAGTGCTGACTTTTATGATT 2277
Query 2276 TTGACGATGACAACAAGGATGAGAGCAAGGTGGATTTTAAAAAGATTGTGAGTGAAAATT 2335
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 TTGAAGATGACAATAAGGATGAGAGCAAGGTGGATTTTAAAAAGATTGTGAGTGAAAATT 2337
Query 2336 GGAATGATCCACCAAAAAGAGAGAGAAAGCGCAACTACTCTGAAGTTGAATACTTCAAGC 2395
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2338 GGAATGATCCACCAAAAAGAGAGAGAAAGCGCAACTACTCTGAAACTGAATACTTCAAGC 2397
Query 2396 AAACGTTGCGACAAGGTGCTCCAGCTAAACCTAAAGAGCCTAGAATTCCACGCATGCCCC 2455
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 AAACACTGCGACAAGGTGCTCCAGCTAAACCTAAAGAGCCTAGAATTCCACGCATGCCCC 2457
Query 2456 AATTGCATGATTTTCAGTTCTTTAACATTCAGAGGCTGACTGAGCTGTATGAAAAAGAAG 2515
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 2458 AATTGCATGATTTTCAGTTCTTTAACATTCAGAGGTTGACTGAGCTGTACGAAAAAGAAG 2517
Query 2516 TGCGATACCTTATGCAAGCACATCAGAAAACTCAAATGAAAGACACAATTGAGGTTGATG 2575
|||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2518 TGCGCTTCCTTATGCAAGCACATCAGAAAACTCAAATGAAAGACACAATTGACGTTGATG 2577
Query 2576 AACCTGAAGAAGTT-G-G-A-GATCCCTTAACTGCTGAAG-AAGTGG-AAGA-AAAGGAG 2628
||||||||||| | | | | || | || || | ||| || ||| ||| |
Sbjct 2578 AACCTGAAGAAATAAGCGGAAGAAAAGG-AGCTATTGCTGGAAGAGGCAAGCGAAACCAT 2636
Query 2629 CT-A--TTGCTGGAAGAGGGTTTCTCAACATGGAGCAGAAGAGACTTCAATGCCTTCATT 2685
| | || ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2637 TTGACCTTACTGT--G-GGGTTTCTCAACATGGAGCAGAAGAGACTTCAATGCCTTCATT 2693
Query 2686 AGGGCTTGTGAGAAGTATGGCCGGAACGACATAAAGAGTATTGCCTCTGAGATGGAAGGG 2745
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2694 AGGGCTTGTGAGAAGTATGGCCGGAATGACATAAAGAGTATTGCCTCTGAGATGGAAGGG 2753
Query 2746 AAAACTGAGGAAGAGGTTGAACGATATGCTCAAGTTTTCCAAGTGCGATATAAAGAGCTG 2805
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2754 AAAACTGAGGAAGAGGTTGAACGATATGCTCAAGTTTTCCAAGAGCGATATAAAGAGCTG 2813
Query 2806 AATGATTACGACAGAATCATCAAGAATATTGAGAGAGGGGAAGCAAGAATCTCTAGGAAA 2865
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2814 AACGATTACGACAGAATCATCAAGAATATTGAGAGGGGGGAAGCAAGAATCTCTAGGAAA 2873
Query 2866 GATGAAATCATGAAAGCTATTGGGAAGAAACTGGATCGCTACAGAAACCCGTGGCTGGAA 2925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2874 GATGAAATCATGAAAGCTATTGGGAAGAAACTGGATCGCTACAGAAACCCGTGGCTGGAA 2933
Query 2926 CTGAAGATTCAATATGGTCAGAACAAAGGGAAGCTGTACAATGAAGAGTGCGACCGTTTC 2985
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2934 CTGAAGATTCAGTATGGTCAGAACAAAGGGAAGCTGTACAATGAAGAGTGCGACCGTTTC 2993
Query 2986 ATGATATGCATGGTCCATAAACTTGGGTATGGAAACTGGGATGAGCTAAAGGCAGCGTTT 3045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2994 ATGATATGCATGGTCCATAAACTTGGGTATGGAAACTGGGATGAGCTAAAGGCAGCGTTT 3053
Query 3046 CGGACATCCCCCTTGTTTAGGTTTGACTGGTTTGTAAAATCCCGCACAACTCAGGAACTT 3105
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3054 CGGACATCCCCCTTGTTCAGGTTTGACTGGTTTGTAAAATCCCGCACAACTCAGGAACTT 3113
Query 3106 GCAAGGAGATGTGACACACTAATCAGGTTGATTgagaaagagaatcaagaatttgatgag 3165
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3114 GCAAGGAGATGTGACACACTAATCAGGTTGATTGAGAAAGAGAATCAAGAATATGATGAG 3173
Query 3166 agagagaggcaagcccgaaaagagaagaagctttcaaagagTGCAACGCCATCAAAACGA 3225
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 3174 AGAGAGAGGCAAGCCCGAAAAGAGAAGAAGCTTGCAAAGAATGCAACGCCATCAAAGCGA 3233
Query 3226 CCTTCGGGTAGGCAAGCAAATGAGAGCCCTTCATCTCTTCTGAAGAAACGAAAGCAGCTG 3285
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3234 CCTTCTGGTAGGCAAGCAAATGAGAGCCCTTCATCTCTTCTGAAGAAACGAAAGCAGCTG 3293
Query 3286 TCAATGGATGATTATGTGAGCTCGGGAAAGCGTAGGAAATAAGAAGGCTTGTGTTGAATC 3345
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3294 TCAATGGATGATTATGTGAGCTCGGGAAAGCGTAGGAAATAAGAAGGCCTGTGTTGAATC 3353
Query 3346 CATCACTAAGTAATCAGAAAGATTTATGATCACTTCTAGGTTTGATTCCGAATCGGAGAA 3405
|||||||||||||||| |||||| |||||| | | |||||| |||||| ||||||||||
Sbjct 3354 CATCACTAAGTAATCATAAAGATATATGATTA-T-CTAGGTACGATTCCAAATCGGAGAA 3411
Query 3406 TTAGTTAGAAGAAGCTCCTTAGAGACAAGGATCTAATATTTTGTACCCGCAAGCATCACT 3465
||||||||| ||||| ||||| ||||||||||| ||||||||||| ||||||||| |||
Sbjct 3412 ATAGTTAGAAAAAGCTTCTTAGTGACAAGGATCTTATATTTTGTACTCGCAAGCATTACT 3471
Query 3466 GCATTGTCTCCGACTTCTCTTATTTCTTCAACGTGTATTTTACTCT-A-TTTTGTTTGTA 3523
||||||||||||||||||||||||| |||||||||||||||||| | | |||| ||| ||
Sbjct 3472 GCATTGTCTCCGACTTCTCTTATTT-TTCAACGTGTATTTTACT-TGAATTTT-TTTATA 3528
Query 3524 GAAATATTCACCACATTCCTAGTAGTGCGTTTTTAGTAAATCTCAAATCAACTTTTGTGG 3583
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3529 GAAATATTCACCACATTCCTAGTAGTG-GTTTTTAGTAAATCTCAAATCAACTTTTGTGG 3587
Query 3584 TCGGATTTG 3592
|||||||||
Sbjct 3588 TCGGATTTG 3596
> Ahg477943 jgi|Araly1|477943|fgenesh2_kg.3__644__AT3G06400.1
Length=3447
Score = 3703 bits (2005), Expect = 0.0
Identities = 2762/3129 (88%), Gaps = 45/3129 (1%)
Strand=Plus/Plus
Query 196 GAAGAAGATGATGACGAGCTCGAGGCCGTCGCTCGCTCTGCGGGCTCTGACGAGGAAGAT 255
||||||||||| || ||||||||||| || ||||| ||| | ||||| ||||| || ||
Sbjct 143 GAAGAAGATGAGGAGGAGCTCGAGGCTGTTGCTCGTTCTTCTGGCTCCGACGATGACGAA 202
Query 256 GTTG-CG-C-CCGACGAAGCACCTGTCTCTGAC-GACGAGGTTGTC-CCCGTAGAAGATG 310
|| | || | |||||||| | || ||||| ||| || |||| || | |||||||||||||
Sbjct 203 GTAGTCGCCGCCGACGAATCCCCAGTCTCCGACGGA-GAGGCTG-CTCCCGTAGAAGATG 260
Query 311 ACGCTGAAGAGGACGAAGAAGACGAGGAGAAAGCTGAGATCAGCAAACGTGAGAAGGCTA 370
| | | |||||||||||||| ||||| |||||||| ||||||||||||||||| || |
Sbjct 261 A---TTACGAGGACGAAGAAGATGAGGAAAAAGCTGAAATCAGCAAACGTGAGAAAGCCA 317
Query 371 GACTCAAAGAAATGCAGAAGA-TGAAGAAGCAGAAAATTC-AGCAAAT-CTTAGACTCCC 427
|||| | ||| |||||||| | ||||||||||||| |||| || | || | | ||||| |
Sbjct 318 GACTTAGAGAGATGCAGAA-ATTGAAGAAGCAGAAGATTCAAG-AGATGC-TGGACTCAC 374
Query 428 AAAATGCTTCCATAGATGCTGATATGAACAATAAAGGAAAGGGGAGGA-TAAAGTATCTT 486
||||||||||||||||||| |||||||||||||| ||||| |||| || | |||||||||
Sbjct 375 AAAATGCTTCCATAGATGCGGATATGAACAATAAGGGAAAAGGGA-GACTGAAGTATCTT 433
Query 487 CTGCAGCAAACTGAGTTATTTGCACATTTTGCTAAAA-GTGACCCGTCTCCGTCCCAGAA 545
|||||||||||||||||||||||||| ||||| |||| |||| | ||| | || |||||
Sbjct 434 CTGCAGCAAACTGAGTTATTTGCACACTTTGC-AAAAGGTGATGCATCTTCTTCTCAGAA 492
Query 546 GAAGGGAAAAGGAAGGGGTCGCCATTCTTCCAAACTAACCGAGGAAGAGGAAGATGAAGA 605
||||| |||||||||||||| ||| |||||||| |||| || || |||||||| |||||
Sbjct 493 GAAGGCTAAAGGAAGGGGTCGTCATGCTTCCAAAATAACTGAAGAGGAGGAAGACGAAGA 552
Query 606 GTGTTTAAAAGAAGAAGAGGGTGG-TATAGTTGGATCTGGAGGCACACGGTTGCTCACTC 664
|| | |||| |||||||||| ||| | || |||||||||| ||||||||| ||||| |
Sbjct 553 GTATCTAAAGGAAGAAGAGGATGGCT-TAACTGGATCTGGAAACACACGGTTACTCACAC 611
Query 665 AGCCCGCTTGTATTCAGGGGAAGTTAAGAGATTACCAATTAGCTGGTTTAAACTGGCTCA 724
||||| |||||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 612 AGCCCTCTTGTATTCAAGGGAAGATGAGAGATTACCAATTAGCTGGTTTAAACTGGCTCA 671
Query 725 TTCGGCTGTATGAGAACGGCATAAATGGGATTCTTGCAGATGAAATGGGTCTGGGGAAGA 784
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 672 TTCGGCTGTATGAGAATGGCATAAATGGAATTCTTGCTGATGAAATGGGTCTGGGGAAGA 731
Query 785 CGCTTCAAACCATTTCTTTGTTGGCTTACCTGCATGAGTACAGGGGAATTAATGG-CCCT 843
|||||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||| |||
Sbjct 732 CGCTTCAAACGATTTCTTTGTTGGCATACCTTCATGAATACAGGGGAATCAATGGTCCC- 790
Query 844 CATATGGTAGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTCGCCGATTT 903
|||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||| |||
Sbjct 791 CATATGGTGGTTGCTCCAAAATCAACACTTGGTAATTGGATGAACGAAATTCGCCGGTTT 850
Query 904 TGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGAAGACATATTCGT 963
||||||||||| ||||||||||| || || |||||||| ||||| || |||||||||||
Sbjct 851 TGTCCTGTCCTACGTGCTGTGAAGTTCCTTGGTAATCCTGAGGAGAGGAGACATATTCGA 910
Query 964 GAAGAACTGCTAGTTGCAGGGAAATTCGACATTTGTGTAACAAGCTTTGAGATGGCTATC 1023
|| || ||||||||||| |||||||| || ||||| || ||||||||||||||||| |||
Sbjct 911 GACGACCTGCTAGTTGCTGGGAAATTTGATATTTGCGTCACAAGCTTTGAGATGGCCATC 970
Query 1024 AAAGAGAAGACAACA-TTGCGCCGTTTTAGCTGGCGATATATAATCATTGATGAAGCACA 1082
|||||||||||| || || || || ||||||||||| ||||| ||||| |||||||| ||
Sbjct 971 AAAGAGAAGACAGCACTT-CGTCGGTTTAGCTGGCGTTATATTATCATCGATGAAGCGCA 1029
Query 1083 TCGAATTAAAAATGAGAATTCACTCCTTTCGAAAACCATGAGACTTTTCAGCACCAACTA 1142
| |||| || || |||||||| |||||||| ||||||||||||||||| |||||||| ||
Sbjct 1030 TAGAATCAAGAACGAGAATTCTCTCCTTTCTAAAACCATGAGACTTTTTAGCACCAATTA 1089
Query 1143 TCGGCTTCTTATCACGGGAACCCCCCTTCAGAATAATCTCCATGAATTGTGGGCCCTTCT 1202
||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||
Sbjct 1090 TCGGCTTCTTATCACGGGAACCCCCCTTCAGAATAATCTTCATGAACTGTGGGCTCTTCT 1149
Query 1203 CAATTTTCTTCTCCCTGAGGTTTTTAGTTCAGCAGAAACTTTTGACGAGTGGTTTCAAAT 1262
||||||||||| |||||| |||||||||||||||| |||||||| || |||||||||||
Sbjct 1150 AAATTTTCTTCTGCCTGAGATTTTTAGTTCAGCAGAGACTTTTGATGAATGGTTTCAAAT 1209
Query 1263 TTCTGGTGAAAACGACCAGCAAGAAGTTGTTCAACAACTTCACAAGGTTCTGCGACCATT 1322
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1210 TTCTGGTGAGAATGACCAGCAAGAAGTTGTTCAACAACTTCACAAGGTTCTTCGACCATT 1269
Query 1323 TCTTCTTCGGAGGTTAAAATCAGATGTAGAGAAAGGCTTACCTCCAAAAAAGGAGACAAT 1382
||||||||| || |||| |||||||| |||||||| || || || || |||||||| ||
Sbjct 1270 TCTTCTTCGAAGACTAAAGTCAGATGTTGAGAAAGGTTTGCCACCGAAGAAGGAGACCAT 1329
Query 1383 ACTCAAAGTTGGCATGTCTCAAATGCAAAAACAGTACTACAAGGCTTTACTGCAGAAGGA 1442
||| |||||||| |||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1330 ACTTAAAGTTGGTATGTCTCAGATGCAAAAGCAATACTACAAGGCTTTACTGCAGAAGGA 1389
Query 1443 TCTTGAAGTGGTTAATGGTGGTGGAGAACGCAAACGTCTGTTGAACATAGCAATGCAATT 1502
|||||||| |||||||| |||||||||||||||||||||| | ||||| ||||||||| |
Sbjct 1390 TCTTGAAGCGGTTAATGCTGGTGGAGAACGCAAACGTCTGCTAAACATTGCAATGCAACT 1449
Query 1503 GCGGAAATGCTGCAATCACCCTTATCTCTTCCAGGGTGCGGAGCCTGGTCCCCCATATAC 1562
||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1450 GCGTAAATGCTGCAATCACCCTTATCTCTTCCAGGGTGCAGAACCTGGTCCCCCATATAC 1509
Query 1563 TACAGGAGATCACCTTGTAACAAACGCAGGTAAGATGGTTCTCTTAGATAAATTGCTACC 1622
||||||||||||||| ||||||| || |||||||||||||| || ||||||||||| ||
Sbjct 1510 CACAGGAGATCACCTTATAACAAATGCTGGTAAGATGGTTCTGTTGGATAAATTGCTTCC 1569
Query 1623 TAAGTTGAAGGATCGAGATTCAAGGGTTCTGATATTTTCTCAGATGACAAGGCTTTTGGA 1682
||||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1570 TAAGTTGAAAGAACGTGATTCAAGGGTTCTGATATTTTCTCAGATGACAAGACTTTTGGA 1629
Query 1683 TATTCTCGAGGATTACCTAATGTATCGTGGTTACCAGTACTGCCGTATTGATGGAAATAC 1742
|||||| ||||| || |||||||||||||||||| ||| ||||| ||||||||||| ||
Sbjct 1630 TATTCTTGAGGACTATTTAATGTATCGTGGTTACCTGTATTGCCGCATTGATGGAAACAC 1689
Query 1743 TGGTGGTGACGAACGAGATGCTTCCATAGAAGCCTATAACAAGCCAGGAAGTGAGAAATT 1802
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1690 TGGTGGTGACGAACGAGATGCCTCCATAGAAGCCTACAACAAGCCAGGAAGTGAGAAATT 1749
Query 1803 CGTTTTCTTGTTATCCACTAGAGCTGGAGGACTTGGTATCAATCTTGCTACTGCAGATGT 1862
|||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1750 TGTTTTCTTGTTATCTACCAGAGCTGGAGGGCTTGGTATCAATCTTGCTACTGCAGATGT 1809
Query 1863 TGTGATCCTCTATGATAGTGACTGGAACCCTCAAGTTGACTTGCAAGCTCAGGATCGTGC 1922
||| ||||| || |||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 1810 TGTTATCCTGTACGATAGTGATTGGAACCCACAAGTCGACTTGCAAGCTCAGGATCGTGC 1869
Query 1923 ACATAGGATTGGTCaaaaaaaaGAAGTTCAAGTGTTCCGGTTCTGCACCGAGAATGCTAT 1982
||||| ||||||||||||||||||||||||||||| || |||||||| ||| ||||||
Sbjct 1870 CCATAGAATTGGTCAAAAAAAAGAAGTTCAAGTGTTTCGATTCTGCACTGAGTCTGCTAT 1929
Query 1983 TGAGGCTAAAGTCATTGAGAGAGCTTACAAGAAGTTGGCACTTGATGCTCTGGTTATTCA 2042
||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1930 TGAGGAGAAAGTGATTGAAAGAGCTTACAAGAAGTTAGCACTTGATGCTCTGGTTATTCA 1989
Query 2043 GCAAGGGAGATTGGCAGAACAGAAAACTGTTAATAAGGATGAGTTGCTTCAAATGGTGAG 2102
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1990 GCAAGGGAGATTGGCAGAGCAGAAAACTGTCAATAAGGATGAGTTGCTTCAAATGGTAAG 2049
Query 2103 ATATGGTGCTGAAATGGTGTTTAGTTCTAAAGATAGCACAATTACGGATGAGGATATTGA 2162
|||||||||||| |||||||| |||||||||||||||||||| || || |||||||||||
Sbjct 2050 ATATGGTGCTGAGATGGTGTTCAGTTCTAAAGATAGCACAATCACAGACGAGGATATTGA 2109
Query 2163 CAGAATCATTGCCAAAGGAGAAGAGGCAACGGCTGAACTTGATGCCAAGATGAAGAAATT 2222
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2110 TAGAATCATTGCCAAAGGAGAAGAGGCAACAGCTGAACTTGATGCCAAGATGAAGAAATT 2169
Query 2223 TACTGAAGATGCAATACAGTTTAAAATGGATGACAGTGCTGACTTTTATGATTTTGACGA 2282
|| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 2170 CACAGAAGATGCGATACAGTTTAAAATGGATGACAGTGCTGACTTCTATGATTTTGATGA 2229
Query 2283 TGACAACAAGGATGAGAGCAAGGTGGATTTTAAAAAGATTGTGAGTGAAAATTGGAATGA 2342
|||||| |||||||| | |||| | ||||||||||||||||| || || |||||||||||
Sbjct 2230 TGACAATAAGGATGAAAACAAGCTCGATTTTAAAAAGATTGTAAGCGACAATTGGAATGA 2289
Query 2343 TCCACCAAAAAGAGAGAGAAAGCGCAACTACTCTGAAGT-TGAATACTTCAAGCAAACGT 2401
||| || ||| | |||||||||||||||||||||||| | ||||||||| |||||||| |
Sbjct 2290 TCCCCCCAAACGGGAGAGAAAGCGCAACTACTCTGAA-TCTGAATACTTTAAGCAAACAT 2348
Query 2402 TGCGACAAGGTGCTCCAGCTAAACCTAAAGAGCCTAGAATTCCACGCATGCCCCAATTGC 2461
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 2349 TGCGGCAAGGTGCTCCAGCTAAACCTAAAGAGCCTAGAATTCCGCGCATGCCCCAGTTGC 2408
Query 2462 ATGATTTTCAGTTCTTTAACATTCAGAGGCTGACTGAGCTGTATGAAAAAGAAGTGCGAT 2521
| ||||| |||||||||||||||||||| |||| ||| |||||||||| ||||| || |
Sbjct 2409 ACGATTTCCAGTTCTTTAACATTCAGAGATTGACCGAGTTGTATGAAAAGGAAGTACGTT 2468
Query 2522 ACCTTATGCAAGCACATCAGAAAACTCAAATGAAAGACACAATTGAGGTTGATGAACCTG 2581
| || |||||| |||||||||||| ||| |||||||||| ||||| ||||| ||||| |
Sbjct 2469 ATCTCATGCAAACACATCAGAAAAATCAGTTGAAAGACACTATTGATGTTGAAGAACCAG 2528
Query 2582 AAGAAGTTGGAGATCCCTTAACTGCTGAAGAAGTGGAAGAAAAGGAGCTATTGCTGGAAG 2641
||| || |||||||||||||||||||||||||| ||||||||||||| ||| |||| |
Sbjct 2529 AAG--GT-GGAGATCCCTTAACTGCTGAAGAAGTAGAAGAAAAGGAGCGATTATTGGAGG 2585
Query 2642 AGGGTTTCTCAACATGGAGCAGAAGAGACTTCAATGCCTTCATTAGGGCTTGTGAGAAGT 2701
|||||||||||||||||||||||||||| |||||| | ||| | ||||| ||||||||||
Sbjct 2586 AGGGTTTCTCAACATGGAGCAGAAGAGATTTCAATACTTTCCTCAGGGCATGTGAGAAGT 2645
Query 2702 ATGGCCGGAACGACATAAAGAGTATTGCCTCTGAGATGGAAGGGAAAACTGAGGAAGAGG 2761
||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||| |
Sbjct 2646 ATGGCCGCAACGACATAAAAAGCATTGCCTCTGAGATGGAAGGGAAAACAGAGGAAGAAG 2705
Query 2762 TTGAACGATATGCTCAA-GTTTTCCAAGTGCGATATAAAGAGCTGAATGATTACGACAGA 2820
||||| ||||||| ||| || ||| ||| |||||| || |||||||| || || || |||
Sbjct 2706 TTGAAAGATATGC-CAAAGTATTCAAAGAGCGATACAAGGAGCTGAACGACTATGATAGA 2764
Query 2821 ATCATCAAGAATATTGAGAGAGGG-GAAGCAAGAATCTCTAGGAAAGATGAAATCATGAA 2879
|| || ||||| |||||||| ||| || ||||| |||||||||||||| |||||||||||
Sbjct 2765 ATAATTAAGAACATTGAGAG-GGGAGAGGCAAGGATCTCTAGGAAAGACGAAATCATGAA 2823
Query 2880 AGCTATTGGGAAGAAACTGGATCGCTACAGAAACCCGTGGCTGGAACTGAAGATTCAATA 2939
||| || |||||||| |||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 2824 AGCCATAGGGAAGAAGCTGGATCGTTACAGAAACCCTTGGCTGGAACTGAAGATTCAGTA 2883
Query 2940 TGGTCAGAACAAAGGGAAGCTGTACAATGAAGAGTGCGACCGTTTCATGATATGCATGGT 2999
||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| |
Sbjct 2884 TGGTCAGAACAAAGGAAAGTTGTACAATGAAGAGTGCGACCGTTTCATGATCTGCATGAT 2943
Query 3000 CCATAAACTTGGGTATGGAAACTGGGATGAGCTAAAGGCAGCGTTTC-GGACATCCCCCT 3058
||| |||||||||||||| || ||||||||||| |||||||| || | ||||||| || |
Sbjct 2944 CCACAAACTTGGGTATGGGAATTGGGATGAGCTGAAGGCAGCATT-CAGGACATCGCCTT 3002
Query 3059 TGTTTAGGTTTGACTGGTTTGTAAAATCCCGCACAACTCAGGAACTTGCAAGGAGATGTG 3118
|||| ||||| ||||||||||| ||||| ||||| | ||||||||||||||| ||||| |
Sbjct 3003 TGTTCAGGTTCGACTGGTTTGTGAAATCTCGCACGAGTCAGGAACTTGCAAGAAGATGCG 3062
Query 3119 ACACACTAAT-CAGGTTGATTgagaaagagaatcaagaatttgatgagagagagaggcaa 3177
|||| || || | | |||| ||||||||||| || || |||||||| ||||||||||||
Sbjct 3063 ACACCCTGATTC-GACTGATAGAGAAAGAGAACCAGGAGTTTGATGAAAGAGAGAGGCAA 3121
Query 3178 gcccgaaaagagaagaagctttcaaagagTGCAACGCCATCAAAACGACCTTCGGGTAGG 3237
||||| |||||||||||||| ||||||||||||| |||||||||||||||| || ||
Sbjct 3122 GCCCGTAAAGAGAAGAAGCTGGCAAAGAGTGCAACACCATCAAAACGACCTTTAGGAAGA 3181
Query 3238 CAAGCAAATGAGAGCCCTTCATCTCTTCTGAAGAAACGAAAGCAGCTGTCAATG-GATGA 3296
||||| | |||||| |||||||| | |||||| |||||||| ||||| ||| |||||
Sbjct 3182 CAAGCCAGTGAGAGTCCTTCATCGA--C-GAAGAAGCGAAAGCACCTGTCGATGAGATGA 3238
Query 3297 --TTATGTG 3303
|||||||
Sbjct 3239 GATTATGTG 3247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135979708329
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5