BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18630.1
Length=1585
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488750 jgi|Araly1|488750|fgenesh2_kg.6__1884__AT5G18630.1 1703 0.0
Ahg893788 jgi|Araly1|893788|Al_scaffold_0006_1784 1352 0.0
> Ahg488750 jgi|Araly1|488750|fgenesh2_kg.6__1884__AT5G18630.1
Length=1472
Score = 1703 bits (922), Expect = 0.0
Identities = 1056/1122 (94%), Gaps = 3/1122 (0%)
Strand=Plus/Plus
Query 140 CTTTTGGTTGCTGAAATCTCTTTCGGGTTTTGTCCTAATCCTCATTAGTTTGGGTTTCGT 199
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 108 CTTTTGGTTGCTGAAATCTCTTTCGGGTTTTGTCCTAATCATCGTTAGTTTGGGTTTCGT 167
Query 200 GAGTCTCGTTTTATAAGAACATGGGACAAAAGAGATTGTTGTTCTTGCTGGCAGTTTTTA 259
||||||||| ||| |||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 168 GAGTCTCGTATTACAAGAACATGGGACAAAAGAGATGGTTCCTCTTGCTGGCAATTTTTG 227
Query 260 CTTTTCTTGTTTCATCTTCATATGGTAGAGGTGTTCTCAAGTTGAAGAGCGATGATGATC 319
||| |||| |||| | ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 228 CTTGTCTTCTTTCCTTTTCATGTGGTAGAGGTGTTCTCAAGTTGAAAAGCGATGATGATC 287
Query 320 GACCTGTTTACAACCATACGCTTGCCGTCACGCTTGTGGAGTATGCCTCTGCGGTCTATG 379
|||||||||||||||||||||||||| | || |||||||||||||| |||||||| ||||
Sbjct 288 GACCTGTTTACAACCATACGCTTGCCATAACACTTGTGGAGTATGCTTCTGCGGTTTATG 347
Query 380 AGTCTGATTTGACAAAACTCTTCACTTGGACGTGCGAAAGATGCAATGGTTTGACAAAGG 439
|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 348 AGTCGGATTTGACAAAACTCTTCACTTGGACTTGCGAAAGATGCAATGGTTTTACAAAGG 407
Query 440 ATTTCGAAGTAATAGAGGTCATATTTGACGTTGAACACTGCTTACAGGCGTATGTTGGGG 499
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 ATTTCGAAGTAATAGAGATCATATTTGACGTTGAACACTGCTTACAGGCGTATGTTGGGG 467
Query 500 TGGCTAAGGATTTGAATGCTATCATTATTGCATTTCGGGGAACTCAAGAACACAGCATAC 559
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TGGCTGAGGATTTGAATGCTATCATTATTGCATTTCGGGGAACTCAAGAACACAGCATAC 527
Query 560 AAAATTGGGTCTCAGACTTGTTCTGGAAACAGCTCGATCTGAATTACCCTGACATGCCAG 619
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 528 AAAATTGGGTCTCAGACTTGTTCTGGAAACAGCTCGATCTGAATTACCCTGATATGCCAG 587
Query 620 ATGCAATGGTGCACCATGGCTTTTACAGTGCTTATCACAATACAACTTTACGGCCTGCGG 679
||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |
Sbjct 588 ATGCAATGGTGCACCATGGCTTTTATAGTGCTTATCACAATACAACTGTACGTCCTGCAG 647
Query 680 TTTTGGATGCAATAACACGAGTGAAAAAAGTCTACGGGGCGAACATCAACATCATAGTGA 739
||||||||||||||||||||| |||| ||||||| ||| |||||||||||||||| || |
Sbjct 648 TTTTGGATGCAATAACACGAGCGAAACAAGTCTATGGGACGAACATCAACATCATTGTCA 707
Query 740 CCGGTCATTCAATGGGAGGAGCCATGGCTTCCTTTTGTGGTCTAGACCTAGTTGTAAATG 799
| |||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 708 CTGGTCATTCAATGGGAGGAGCCATGGCTTCCTTTTGTGGGCTAGACTTAGTCGTAAATG 767
Query 800 AAGGTGAAGAAAACGTACAGGTTATGACATTTGGGCAACCTCGTGTTGGGAATGCCGCTT 859
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 AAGGAGAAGAAAACGTACAGGTTATGACATTTGGGCAACCTCGTGTTGGGAATGCCGCTT 827
Query 860 TTGCATCTTATTACAGTTTGCTTGTGCCCAATACCTTCCGGATCACGCATGACCGTGATA 919
|||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||
Sbjct 828 TTGCATCTTATTACAGTTTGCTTGTGCCTAATACCTTCAGAATCACGCATGACCGTGATA 887
Query 920 TGGTTCCTCATCTGCCTCCTTACTATTACCATTTCCCTCAAAAAACATACCACCACTTCC 979
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TGGTTCCCCATCTGCCTCCTTACTATTACCATTTCCCTCAAAAAACATACCACCACTTCC 947
Query 980 CAACAGAGGTGTGGGTGAAAGATTTCAGTTTTTCGAATTTTGTTCTTTTTGGTTTGGAGA 1039
|||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 948 CAACAGAGGTGTGGGTTAAAGAATTCAGTTTTTCGAACTTTGTTCTTTTTGGTTTGGAGA 1007
Query 1040 AAGTTTGTGACAACACTGGTGAAGATCCTACTTGCAGCAGATCGGTAAGGGGAAATAGCA 1099
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1008 AAGTTTGTGACAACACCGGTGAAGATCCTACTTGCAGCAGATCGGTGAGGGGAACTAGCA 1067
Query 1100 TTTCTGACCATTTAAGGTACTTTGGGGTAGAGTTGAAGTGTGAGAGTTGGAGACAGTGCA 1159
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||
Sbjct 1068 TTTCTGACCATTTAAGGTACTTTGGGGTGGAGTTGATGTGTGAGAGTTGGAGACAATGCA 1127
Query 1160 GCATAGTGATGAATCAAGATATGGAGCGTTACAGCAGGAAAGATTCAAGGGGTAACTTAT 1219
||||||||||||| || || |||||||||||||||||||||||||||| ||||||| |||
Sbjct 1128 GCATAGTGATGAACCAGGAGATGGAGCGTTACAGCAGGAAAGATTCAAAGGGTAACATAT 1187
Query 1220 TCCTCTCGCGGACAGTTCCT-CCTAAGGACGTAGTC-AAAAC 1259
|||| ||||||||||||||| || ||| ||| | || |||||
Sbjct 1188 TCCTGTCGCGGACAGTTCCTTCC-AAGTACGCAATCGAAAAC 1228
Score = 126 bits (68), Expect = 4e-28
Identities = 89/98 (91%), Gaps = 5/98 (5%)
Strand=Plus/Plus
Query 9 ATATAATAATATATAAGCTCGCCGTATAATTTTCTTGCCGGGAATAATCTCCGATCATCG 68
|||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 ATAT-AT-ATATATAAG-TCGCCGTATAATTTTCTTGCCGGGAATAATCTCCGATCATCG 70
Query 69 TCGGAAATTTCCGAATT-GTTGTAAAAGAAGTCCAATT 105
||||||||||| || | ||||||||||| || |||||
Sbjct 71 CCGGAAATTTCC-AACTCGTTGTAAAAGACGTTCAATT 107
> Ahg893788 jgi|Araly1|893788|Al_scaffold_0006_1784
Length=1110
Score = 1352 bits (732), Expect = 0.0
Identities = 976/1092 (89%), Gaps = 23/1092 (2%)
Strand=Plus/Plus
Query 215 AGAACATGGGACAAAAGAGATTGTTGTTCTTGCTGGCAGTTTTTACTTTTCTTGTTTCAT 274
|||| |||||||||||||||| ||| |||||||||||| ||||| ||| |||| ||||||
Sbjct 32 AGAATATGGGACAAAAGAGATGGTTCTTCTTGCTGGCATTTTTTGCTTGTCTTTTTTCAT 91
Query 275 CTTCATATGGTAGAGGTGTTCTCAAGTTGAAGAGCGATGATGATCGACCTGTTTACAACC 334
|||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 92 CTTCATGTGGTAGA---GTTCTCAAGTTGAAGAGTGATGATGATCGACCTGTTTACAACC 148
Query 335 ATACGCTTGCCGTCACGCTTGTGGAGTATGCCTCTGCGGTCTATGA-GTCTGATTTGACA 393
| ||||||||| | || |||||||||||| | |||||||||||| | |||||||||| ||
Sbjct 149 ACACGCTTGCCATAACACTTGTGGAGTATACTTCTGCGGTCTAT-ATGTCTGATTTGTCA 207
Query 394 AAACTCTTCACTTGGACGTGCGAAAGATGCAATGGTTTGACAAAGGATTTCGAAGTAATA 453
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 208 GAACTCTTCACTTGGACATGCGAAAGATGCAATGGTTTGACAAAGGGTTTCGAAGTAATA 267
Query 454 GAGGTCATATTTGACGTTGAACACTGCTTACAGGCGTATGTTGGGGTGGCTAAGGATTTG 513
||| | ||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 268 GAGATAATAGTTGACGTTGAGCACTGCTTACAGGCGTATGTTGGGGTGGCTAAGGATTTA 327
Query 514 AATGCTATCATTATTGCATTTCGGGGAACTCAAGAACACAGCATACAAAATTGGGTCTCA 573
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 AATGCTATCATCATTGCATTTCGGGGAACTCAAGAACACAGCATACAAAATTGGGTCTCA 387
Query 574 GACTTGTTCTGGAAACAGCTCGATCTGAATTACCCTGACATGCCAGATGCAATGGTGCAC 633
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 388 GACTTGTTCTGGAAACAGCTCGATTTGAATTACCCTGATATGCCAGATGCAATGGTGCAC 447
Query 634 CATGGCTTTTACAGTGCTTATCACAATACAACTTTACGGCCTGCGGTTTTGGATGCAATA 693
||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||||| ||
Sbjct 448 CATGGATTTTATAGTGCTTATCACAACACAACTGTACGGCCTGCGGTTTTGGATGCAGTA 507
Query 694 ACACGAGTGAAA-AAAGTC-TACGGGGCGAA-CATCAACATCATAGTGACCGGTCATTCA 750
| ||||| ||| ||| || || |||||||| | ||| |||||| ||||| |||||||||
Sbjct 508 AAACGAGC-AAAGAAA-TCATATGGGGCGAATC-TCAGCATCATGGTGACTGGTCATTCA 564
Query 751 ATGGGAGGAGCCATGGCTTCCTTTTGTG-GTCTAGACCTAGTTGTAAATGAAGGTGAAGA 809
|||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||
Sbjct 565 ATGGGAGGAGCCATGGCTTCCTTTTGTGCG-CTAGACCTAGTTGTAAATGAAGATGAAGA 623
Query 810 AAACGTACAGGTTATGACATTTGGGCAACCTCGTGTTGGGAATGCCGCTTTTGCATCTTA 869
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 624 AAACGTACAGGTTATGACATTTGGGCAACCCCGTGTTGGGAATGCTGCTTTTGCATCTTA 683
Query 870 TTACAGTTTGCTTGTGCCCAATACCTTCCGGATCACGCATGACCGTGATATGGTTCCTCA 929
||||| |||||||||||| ||||||||| |||||| ||||||| |||||| ||||||||
Sbjct 684 TTACAATTTGCTTGTGCCTAATACCTTCAGGATCATACATGACCATGATATAGTTCCTCA 743
Query 930 TCTGCCTCCTTACTATTACCATTTCCCTCAAAAAACATACCACCACTTCCCAACAGAGGT 989
||| |||||||||||| | | ||||||||||||||||||||| |||||||||||||||||
Sbjct 744 TCTACCTCCTTACTATCATCTTTTCCCTCAAAAAACATACCATCACTTCCCAACAGAGGT 803
Query 990 GTGGGTGAAAGAT-TTCAGT-TTTTCGAATTTTGTTCTTTTTGGTTTGGAGAAAGTTTGT 1047
|||||||| ||| || ||| |||| |||| ||||| || |||| | ||||||||||||
Sbjct 804 GTGGGTGACAGAACTT-AGTGTTTT-GAATATTGTTATTCGTGGTGTAGAGAAAGTTTGT 861
Query 1048 GACAACACTGGTGAAGATCCTACTTGCAGCAGATCGGTAAGGGGAAATAGCATTTCTGAC 1107
|||||||| |||||||||||||| |||||||||||||||| ||||| |||||| || |||
Sbjct 862 GACAACACCGGTGAAGATCCTACGTGCAGCAGATCGGTAATGGGAAGTAGCATATCCGAC 921
Query 1108 CATTTAAGGTACTTTGGGGTAGAGTTGAA-GTGTGAGAGTTGGAGACAGTGCAGCATAGT 1166
||||||| ||||||||| || ||||| || | |||||| ||||||||| |||| ||||||
Sbjct 922 CATTTAACGTACTTTGGAGTGGAGTT-AATGGGTGAGACTTGGAGACAATGCAACATAGT 980
Query 1167 GATGAATCAAGATATGGAGCGTTACAGCAGGAAAGATTCAAGGGGTAACTTATTCCTCTC 1226
||||| || || |||||| |||||||||||||||||||| ||||||| ||||||| ||
Sbjct 981 GATGAGCCATGAGATGGAGAATTACAGCAGGAAAGATTCAAAGGGTAACATATTCCTGTC 1040
Query 1227 GCGGACAGTTCCT-CCTA-AGGACGTAGTCAAAACAAGTTCTCTATCGAAAACCGGAATC 1284
||||||||||||| || | || ||||| |||||||| | ||| ||||||||||||
Sbjct 1041 GCGGACAGTTCCTTCC-ACAG-ACGTAACCAAAACAAAAAGTATATTTAAAACCGGAATC 1098
Query 1285 TCTAGTCTGTAG 1296
|||||||| |||
Sbjct 1099 TCTAGTCTATAG 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59382691955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5