BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18640.1
Length=1724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893788 jgi|Araly1|893788|Al_scaffold_0006_1784 1650 0.0
Ahg488750 jgi|Araly1|488750|fgenesh2_kg.6__1884__AT5G18630.1 1389 0.0
> Ahg893788 jgi|Araly1|893788|Al_scaffold_0006_1784
Length=1110
Score = 1650 bits (893), Expect = 0.0
Identities = 1016/1077 (94%), Gaps = 2/1077 (0%)
Strand=Plus/Plus
Query 361 ATATGGGACAAAAGAGATGGTTCTTCTTGTTGGCAATTTTTGTTTGTCTTGTTTCATCTT 420
||||||||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||
Sbjct 35 ATATGGGACAAAAGAGATGGTTCTTCTTGCTGGCATTTTTTGCTTGTCTTTTTTCATCTT 94
Query 421 CATGTGGTAGAGTTCTCAAGTTTAAGAGCGATGATGGTCGACCTGTGTACAATCATACGC 480
|||||||||||||||||||||| ||||| ||||||| ||||||||| ||||| || ||||
Sbjct 95 CATGTGGTAGAGTTCTCAAGTTGAAGAGTGATGATGATCGACCTGTTTACAACCACACGC 154
Query 481 TTGCCATCACACTTGTGGAGTATACTTCTGCGGTCTATATGTCTGATTTGTCAGAACTCT 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 TTGCCATAACACTTGTGGAGTATACTTCTGCGGTCTATATGTCTGATTTGTCAGAACTCT 214
Query 541 TCACTTGGACATGCGAAAGATGCAATGGTTTGACAAAGGGTTTTGAGGTAATAGAGATAA 600
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 215 TCACTTGGACATGCGAAAGATGCAATGGTTTGACAAAGGGTTTCGAAGTAATAGAGATAA 274
Query 601 TAGTTGACGTTGAGCACTGCTTACAGGCATATGTTGGGGTGGCTAAGGATTTGAATGCTA 660
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 275 TAGTTGACGTTGAGCACTGCTTACAGGCGTATGTTGGGGTGGCTAAGGATTTAAATGCTA 334
Query 661 TCATTATTGCATTTCGGGGAACTCAAGAACACAGCATACAAAATTGGGTCTCAGACTTGT 720
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 TCATCATTGCATTTCGGGGAACTCAAGAACACAGCATACAAAATTGGGTCTCAGACTTGT 394
Query 721 TCTGGAAACAGCTCGATCTAAATTACCCTGATATGCCAGATGCAATGGTGCACCATGGCT 780
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct 395 TCTGGAAACAGCTCGATTTGAATTACCCTGATATGCCAGATGCAATGGTGCACCATGGAT 454
Query 781 TTTATAGTGCTTATCACAATACAACTGTACGGCCTGCAGTTTTGGATGCAGTAAAACGAG 840
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 455 TTTATAGTGCTTATCACAACACAACTGTACGGCCTGCGGTTTTGGATGCAGTAAAACGAG 514
Query 841 CAAAGGAATCCTATGGGGCCAACCTCAACATCATGGTGACTGGTCATTCAATGGGAGGAG 900
||||| |||| |||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 515 CAAAGAAATCATATGGGGCGAATCTCAGCATCATGGTGACTGGTCATTCAATGGGAGGAG 574
Query 901 CCATGGCTTCCTTTTGTGCGCTAGACCTAGTTGTTAATGAAGGA-GAAGAAAACGTACAA 959
|||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct 575 CCATGGCTTCCTTTTGTGCGCTAGACCTAGTTGTAAATGAAG-ATGAAGAAAACGTACAG 633
Query 960 GTTATGACATTTGGGCAACCTCGTGTTGGGAATGCTGCTTTTGCATCTTATTTCAATTTG 1019
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 634 GTTATGACATTTGGGCAACCCCGTGTTGGGAATGCTGCTTTTGCATCTTATTACAATTTG 693
Query 1020 CTTGTGCCTAATACCTTCCGGATCATACATGACCGTGACATAGTTCCTCATCTGCCTCCT 1079
|||||||||||||||||| ||||||||||||||| ||| |||||||||||||| ||||||
Sbjct 694 CTTGTGCCTAATACCTTCAGGATCATACATGACCATGATATAGTTCCTCATCTACCTCCT 753
Query 1080 TACTATCATCTTTTCCCTCAAAAAACATATCACCACTTCCCCACAGAGGTGTGGTTGACA 1139
||||||||||||||||||||||||||||| || |||||||| |||||||||||| |||||
Sbjct 754 TACTATCATCTTTTCCCTCAAAAAACATACCATCACTTCCCAACAGAGGTGTGGGTGACA 813
Query 1140 GAACTAAGTATTTTGAATATTGTTATCCGTGGTGTGGAAAAAGTTTGTGACAACACCGGT 1199
||||| ||| |||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 814 GAACTTAGTGTTTTGAATATTGTTATTCGTGGTGTAGAGAAAGTTTGTGACAACACCGGT 873
Query 1200 GAAGATCCTACATGCAGCAGATCGGTAATGGGAAATAGCATATCTGACCATTTAACGTAC 1259
||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 874 GAAGATCCTACGTGCAGCAGATCGGTAATGGGAAGTAGCATATCCGACCATTTAACGTAC 933
Query 1260 TTTGGAGTGGAGTTGATGGGTGAGACTTGGAGGCAATGTAACATAGTGATGGGCCATGAG 1319
|||||||||||||| ||||||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 934 TTTGGAGTGGAGTTAATGGGTGAGACTTGGAGACAATGCAACATAGTGATGAGCCATGAG 993
Query 1320 ATGGAGAGTTACAGTAGGAAAGATTCAAAGGGTAACATATTCCTTTCGCGGACAGTTCCT 1379
||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 994 ATGGAGAATTACAGCAGGAAAGATTCAAAGGGTAACATATTCCTGTCGCGGACAGTTCCT 1053
Query 1380 TCCACGGAGGTAATCAAAACAAAAAGTATATCCAAAACCGGAATCTCAAGTCTATAG 1436
||||| || |||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1054 TCCACAGACGTAACCAAAACAAAAAGTATATTTAAAACCGGAATCTCTAGTCTATAG 1110
> Ahg488750 jgi|Araly1|488750|fgenesh2_kg.6__1884__AT5G18630.1
Length=1472
Score = 1389 bits (752), Expect = 0.0
Identities = 1005/1125 (89%), Gaps = 25/1125 (2%)
Strand=Plus/Plus
Query 289 TTGCTAAAATCTCTTGT-GGCTTTTGCT-CTGATAC-TTGTTAGTTTGGGTTTCGTGAGT 345
||||| ||||||||| | || ||||| | || || | | |||||||||||||||||||||
Sbjct 115 TTGCTGAAATCTCTT-TCGGGTTTTG-TCCTAAT-CATCGTTAGTTTGGGTTTCGTGAGT 171
Query 346 CTCGCT-TTATAAAGGATATGGGACAAAAGAGATGGTTCTTCTTGTTGGCAATTTTTGTT 404
|||| | ||| ||| | ||||||||||||||||||||| ||||| |||||||||||| |
Sbjct 172 CTCG-TATTA-CAAGAACATGGGACAAAAGAGATGGTTCCTCTTGCTGGCAATTTTTGCT 229
Query 405 TGTCTTGTTTCATCTTCATGTGGTAGA---GTTCTCAAGTTTAAGAGCGATGATGGTCGA 461
|||||| |||| | ||||||||||||| ||||||||||| || |||||||||| ||||
Sbjct 230 TGTCTTCTTTCCTTTTCATGTGGTAGAGGTGTTCTCAAGTTGAAAAGCGATGATGATCGA 289
Query 462 CCTGTGTACAATCATACGCTTGCCATCACACTTGTGGAGTATACTTCTGCGGTCTAT-AT 520
||||| ||||| |||||||||||||| ||||||||||||||| |||||||||| ||| |
Sbjct 290 CCTGTTTACAACCATACGCTTGCCATAACACTTGTGGAGTATGCTTCTGCGGTTTATGA- 348
Query 521 GTCTGATTTGTCAGAACTCTTCACTTGGACATGCGAAAGATGCAATGGTTTGACAAAGGG 580
||| |||||| || |||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 349 GTCGGATTTGACAAAACTCTTCACTTGGACTTGCGAAAGATGCAATGGTTTTACAAAGGA 408
Query 581 TTTTGAGGTAATAGAGATAATAGTTGACGTTGAGCACTGCTTACAGGCATATGTTGGGGT 640
||| || ||||||||||| ||| |||||||||| |||||||||||||| |||||||||||
Sbjct 409 TTTCGAAGTAATAGAGATCATATTTGACGTTGAACACTGCTTACAGGCGTATGTTGGGGT 468
Query 641 GGCTAAGGATTTGAATGCTATCATTATTGCATTTCGGGGAACTCAAGAACACAGCATACA 700
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GGCTGAGGATTTGAATGCTATCATTATTGCATTTCGGGGAACTCAAGAACACAGCATACA 528
Query 701 AAATTGGGTCTCAGACTTGTTCTGGAAACAGCTCGATCTAAATTACCCTGATATGCCAGA 760
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 529 AAATTGGGTCTCAGACTTGTTCTGGAAACAGCTCGATCTGAATTACCCTGATATGCCAGA 588
Query 761 TGCAATGGTGCACCATGGCTTTTATAGTGCTTATCACAATACAACTGTACGGCCTGCAGT 820
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 589 TGCAATGGTGCACCATGGCTTTTATAGTGCTTATCACAATACAACTGTACGTCCTGCAGT 648
Query 821 TTTGGATGCAGTAAAACGAGC-AAAGGAA-TCCTATGGGGCCAACCTCAACATCATGGTG 878
|||||||||| ||| |||||| ||| || || |||||| | ||| |||||||||| ||
Sbjct 649 TTTGGATGCAATAACACGAGCGAAAC-AAGTC-TATGGGACGAACATCAACATCATTGTC 706
Query 879 ACTGGTCATTCAATGGGAGGAGCCATGGCTTCCTTTTGTGCGCTAGACCTAGTTGTTAAT 938
|||||||||||||||||||||||||||||||||||||||| ||||||| |||| || |||
Sbjct 707 ACTGGTCATTCAATGGGAGGAGCCATGGCTTCCTTTTGTGGGCTAGACTTAGTCGTAAAT 766
Query 939 GAAGGAGAAGAAAACGTACAAGTTATGACATTTGGGCAACCTCGTGTTGGGAATGCTGCT 998
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 767 GAAGGAGAAGAAAACGTACAGGTTATGACATTTGGGCAACCTCGTGTTGGGAATGCCGCT 826
Query 999 TTTGCATCTTATTTCAATTTGCTTGTGCCTAATACCTTCCGGATCATACATGACCGTGAC 1058
||||||||||||| || |||||||||||||||||||||| | |||| |||||||||||
Sbjct 827 TTTGCATCTTATTACAGTTTGCTTGTGCCTAATACCTTCAGAATCACGCATGACCGTGAT 886
Query 1059 ATAGTTCCTCATCTGCCTCCTTACTATCATCTTTTCCCTCAAAAAACATATCACCACTTC 1118
|| ||||| |||||||||||||||||| | | |||||||||||||||||| |||||||||
Sbjct 887 ATGGTTCCCCATCTGCCTCCTTACTATTACCATTTCCCTCAAAAAACATACCACCACTTC 946
Query 1119 CCCACAGAGGTGTGG-TTGACAGAACTAAGTATTTT-GAA-TATTGTTATCCGTGGTGTG 1175
|| |||||||||||| || | |||| | ||| |||| ||| | ||||| | |||| ||
Sbjct 947 CCAACAGAGGTGTGGGTTAA-AGAATTCAGT-TTTTCGAACT-TTGTTCTTTTTGGTTTG 1003
Query 1176 GAAAAAGTTTGTGACAACACCGGTGAAGATCCTACATGCAGCAGATCGGTAATGGGAAAT 1235
|| |||||||||||||||||||||||||||||||| |||||||||||||| | ||||| |
Sbjct 1004 GAGAAAGTTTGTGACAACACCGGTGAAGATCCTACTTGCAGCAGATCGGTGAGGGGAACT 1063
Query 1236 AGCATATCTGACCATTTAACGTACTTTGGAGTGGAGTTGATGGGTGAGACTTGGAGGCAA 1295
||||| ||||||||||||| ||||||||| |||||||||||| |||||| |||||| |||
Sbjct 1064 AGCATTTCTGACCATTTAAGGTACTTTGGGGTGGAGTTGATGTGTGAGAGTTGGAGACAA 1123
Query 1296 TGTAACATAGTGATGGGCCATGAGATGGAGAGTTACAGTAGGAAAGATTCAAAGGGTAAC 1355
|| | |||||||||| ||| ||||||||| ||||||| |||||||||||||||||||||
Sbjct 1124 TGCAGCATAGTGATGAACCAGGAGATGGAGCGTTACAGCAGGAAAGATTCAAAGGGTAAC 1183
Query 1356 ATATTCCTTTCGCGGACAGTTCCTTCCACGGAGGTAATC-AAAAC 1399
|||||||| ||||||||||||||||||| | | | |||| |||||
Sbjct 1184 ATATTCCTGTCGCGGACAGTTCCTTCCAAGTACGCAATCGAAAAC 1228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64677236010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5