BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18660.1
Length=1448
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488753 jgi|Araly1|488753|fgenesh2_kg.6__1887__AT5G18660.1 2218 0.0
> Ahg488753 jgi|Araly1|488753|fgenesh2_kg.6__1887__AT5G18660.1
Length=1414
Score = 2218 bits (1201), Expect = 0.0
Identities = 1348/1419 (95%), Gaps = 9/1419 (1%)
Strand=Plus/Plus
Query 34 CTTCACTTTCTCGCACTTTCCCTCTCATTTTCCCGATCAT-AGAAACAGCATTGTACAGA 92
|||||||||||||||||||||||||||||||||||||| | | ||||| |||||||||||
Sbjct 1 CTTCACTTTCTCGCACTTTCCCTCTCATTTTCCCGATCGTCA-AAACAACATTGTACAGA 59
Query 93 GATTTCAAAGAATGTCACTTTGCTCTTCCTTCAACGTATTCGCTTCCTACTCACCAAAAC 152
|||||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||||||
Sbjct 60 GATTTCAAAGCATGTCACTTTGTTCTTCGTTCAACGTTTTCGCTTCATACTCACCAAAAC 119
Query 153 CCAAAACCATCTTCAAAGATTCCAAATTCATTTCACAATTTCAGGTAAAGTCGTCTCCTT 212
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 120 CCAAAACCATCTTCAAAGATTCCAAATTCATTGCACAATTTCAGGTAAAGTCGTCTCCTT 179
Query 213 TAGCTTCAACATTCCACACAAATGAATCCTCA-ACGAGTCTTAAGTATAAGAGAGCGAGA 271
|||||||||||||| | || ||||||||||| | || |||||||| ||| |||||||||
Sbjct 180 TAGCTTCAACATTCAAAACCCATGAATCCTCAGA-GACTCTTAAGTTTAAAAGAGCGAGA 238
Query 272 CTCAAACCAATTTCATCTCTAGACTCGGGAATTTCAGAAATCGCTACATCACCTTCATTC 331
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 239 CTCAAACCAATTTCATCTCTAGACTCGGGAATTTCAGAAATCGCTACATCGTCTTCCTTC 298
Query 332 AGGAACAAAAGCCCTAAAGATATAAACGTTTTAGTGGTTGGTTCAACTGGGTACATAGGT 391
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 299 AGGAACAAAAGCCCTAAAGATATAAACGTTTTAGTGGTTGGTTCAACTGGATACATAGGT 358
Query 392 AGATTTGTAGTGAAAGAGATGATCAAAAGAGGGTTCAATGTGATTGCTGTTGCGAGAGAG 451
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 359 AGATTCGTAGTGAAAGAGATGATCAAAAGAGGGTTCAATGTGACTGCTGTTGCGAGAGAG 418
Query 452 AAGAGTGGGATTAGAGGCAAA-AACGACAAGGAAGAGACTTTGAAGCAATTACAAGGCGC 510
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 419 AAGAGTGGGATTAGAGG-AAAGAACGACAAGGAAGAGACTTTGAAGCAATTACAAGGCGC 477
Query 511 CAATGTGTGTTTCTCTGATGTTACTGAGTTAGATGTTCTTGAGAAATCTATTGAGAATCT 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CAATGTGTGTTTCTCTGATGTTACTGAGTTAGATGTTCTTGAGAAATCTATTGAGAATCT 537
Query 571 AGGATTTGGTGTTGATGTTGTTGTTTCCTGTCTCGCTAGTCGTAATGGAGGGATTAAAGA 630
||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 538 AGGGTTTGGTATTGATGTTGTTGTGTCCTGTCTCGCTAGTCGTAATGGAGGGATTAAAGA 597
Query 631 TTCGTGGAAGATTGATTATGAAGCTACCAAAAACAGTCTTGTAGCTGGGAAGAAGTTTGG 690
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 598 TTCTTGGAAGATTGATTATGAAGCTACCAAGAATAGTCTTGTAGCTGGGAAGAAGTTTGG 657
Query 691 TGCTAAGCATTTTGTTTTGCTCTCTGCGATTTGTGTGCAGAAGCCTTTACTGGAGTTTCA 750
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 658 TGCTAAGCATTTCGTTTTGCTCTCTGCGATTTGTGTGCAGAAGCCTTTGTTGGAGTTTCA 717
Query 751 GAGAGCGAAACTGAAGTTCGAAGCAGAGTTGATGGATTTGGCTGAGCAACAAGACTCTAG 810
|||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| ||
Sbjct 718 GAGAGCGAAACTGAAGTTCGAAGCCGAGTTGATGGATTTGGCGGAGAAACAAGACTCGAG 777
Query 811 CTTTACATACAGCATTGTGAGACCAACGGCTTTTTTCAAGAGCTTAGGTGGTCAAGTTGA 870
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CTTTACTTACAGCATTGTGAGACCAACGGCTTTTTTCAAGAGCTTAGGTGGTCAAGTTGA 837
Query 871 GATTGTGAAAGATGGGAAACCTTACGTGATGTTTGGAGATGGTAAGCTATGCGCTTGTAA 930
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 838 GATTGTGAAAGATGGGAAACCTTATGTGATGTTTGGAGATGGTAAGCTATGCGCTTGTAA 897
Query 931 ACCGATCAGCGAACAAGATTTAGCAGCGTTTATAGCGGATTGCGTGTTGGAAGAGAACAA 990
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 898 ACCGATCAGCGAACAGGATTTAGCAGCGTTTATAGCGGATTGTGTGTTGGAAGAGAATAA 957
Query 991 GATCAATCAAGTTTTGCCAATTGGTGGACCAGGCAAGGCATTAACGCCATTAGAGCAAGG 1050
||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 958 GATCAATCAAGTTTTACCAATTGGTGGACCAGGGAAGGCGTTAACGCCATTGGAGCAAGG 1017
Query 1051 AGAGATTCTGTTTAAGATTCTTGGGAGAGAGCCTAAGTTCTTGAAAGTACCTATCGAGAT 1110
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AGAGATTTTGTTTAGGATTCTTGGGAGAGAGCCTAAGTTCTTGAAAGTACCTATCGAGAT 1077
Query 1111 TATGGATTTTGTGATTGGTGTTCTCGATTCTATTGCAAAGATCTTTCCTTCGGTTGGAGA 1170
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1078 TATGGATTTTGTGATTGGGGTTCTTGATTCTATTGCAAAGATTTTTCCTTCGGTTGGAGA 1137
Query 1171 GGCTGCCGAATTTGGGAAGATTGGAAGGTATTACGCCGCAGAGAGTATGTTGATTCTTGA 1230
|||||| || ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1138 GGCTGCTGAGTTTGGGAAGATCGGGAGGTATTACGCCGCAGAGAGTATGTTGATTCTTGA 1197
Query 1231 TCCAGAGACTGGAGAGTATAGCGAGGAGAAGACACCGAGTTACGGGAAAGACACGCTTGA 1290
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1198 TCCAGAGACTGGAGAGTATAGCGAGGAGAAGACACCGAGTTATGGGAAAGACACGCTTGA 1257
Query 1291 GGATTTCTTTGCGAAAGTGATCAGAGAAGGCATGGCGGGTCAAGAACTCGGTGAACAGTT 1350
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1258 GGATTTCTTTGCGAAAGTGATCAGAGAAGGAATGGCAGGTCAAGAACTCGGTGAACAGTT 1317
Query 1351 CTTCTAGTATGAATTGTTTTTGTGCGAAATGAGTTTG-CTGTGTAGTTTGTAACTGATGA 1409
|||||||| |||| | |||| ||| ||||||||||| |||||||||||||||||||||
Sbjct 1318 CTTCTAGTGTGAAAT-TTTTA-TGCAAAATGAGTTTGGCTGTGTAGTTTGTAACTGATGT 1375
Query 1410 GATTATAAATATAAAACCTGTGAATTTGAGAGATTCGTT 1448
|||||||||||||||| |||||||||||||||||| |||
Sbjct 1376 GATTATAAATATAAAATCTGTGAATTTGAGAGATTTGTT 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54164328390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5