BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18680.1
Length=1474
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941395 jgi|Araly1|941395|scaffold_601939.1 1903 0.0
> Ahg941395 jgi|Araly1|941395|scaffold_601939.1
Length=1216
Score = 1903 bits (1030), Expect = 0.0
Identities = 1156/1217 (95%), Gaps = 8/1217 (1%)
Strand=Plus/Plus
Query 92 TAAGTATCCCCAGAAGTCGTATGACCTTACGTAGCTTAATCCTTGAGATGCGTTCGAGAC 151
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 TAAGTATCCCCACAAGTCGTATGACCTTACGTAGCTTAATCCTTGAGATGCGTTCGAGGC 60
Query 152 CGCATCGTGTGGTCCACGACCTT---GCCGCCGCCGCAGCTGCCGATTCCACTTCTGTGT 208
| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 61 CACATCGTGTGGTCCACGACCTTGCCGCCGCCGCCGCAGCTGCCGATTCCACTCCTGGGT 120
Query 209 CATCGCAAGATTATCGCTGGTCAGAGATTCCTGAAGAGCTTCTTAGGGAGATTCTGATTC 268
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 121 CATCGCAAGATTATCGCTGGTCAGATATCCCTGAAGAGCTTCTTAGAGAGATTCTGATTC 180
Query 269 GTGTTGAAGCGGCGGACGGTGGCGGATGGCCGTCACGACGCAGCGTGGTGGCTTGTGCCG 328
||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| ||||
Sbjct 181 GTGTTGAGGCGGCGGACGGTGGCGAATGGCCGTCACGACGCAGCGTGGTTGCTTGCGCCG 240
Query 329 GCGTTTGTCGTGGCTGGCGGCTACTTATGAACGAAACCGTCGTTGTCCCTGAGATCTCTT 388
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCGTTTGCCGTGGCTGGCGGCTACTTATGAACGAAACCGTCGTTGTCCCTGAGATCTCTT 300
Query 389 CTAAGTTGACTTTCCCCATCTCTCTCAAGCAGCCTGGTCCAAGGGATTCACTGGTTCAAT 448
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 301 CTAAGTTGACTTTCCCCATCTCTCTCAAGCAGCCTGGTCCAAGGGATTCTCTGGTTCAGT 360
Query 449 GCTTTATCAAACGTAATCGAATTACGCAATCATATCATCTCTATCTCGGATTAACCAACT 508
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 GCTTTATCAAACGTAATCGAATTACGCAATCATATCATCTTTATCTCGGATTAACCAACT 420
Query 509 CTTTAACGGATGATGGGAAGTTTTTGCTTGCTGCGTGTAAGTTGAAGCACACAACTTGTA 568
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTTAACGGATAATGGGAAGTTTCTGCTTGCTGCGTGTAAGTTGAAGCACACAACTTGTA 480
Query 569 CGGATTACATTATCTCTTTACGTTCTGATGATATGTCGAGAAGAAGCCAAGCTTATGTTG 628
| ||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||
Sbjct 481 CTGATTACATTATCTCTCTACGTTCTGATGATATGTCGAGGAGAAGCCAAGCGTATGTTG 540
Query 629 GCAAAGTGAGATCGAACTTCCTAGGAACGAAATTCACTGTCTTTGATGGAAATCTGCTGC 688
||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 541 GCAAAGTGAGATCAAACTTCCTAGGAACAAAATTCACCGTCTTTGATGGAAATCTGCTGC 600
Query 689 CTTCAACGGGAGCCGCAAAGTTGAGAAAGAGCCGATCTTATAATCCCGCAAAAGTTTCAG 748
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 CTTCAACGGGAGCCGCTAAGTTGAGAAAGAGCCGATCTTCTAATCCCGCAAAAGTTTCAC 660
Query 749 CAAAAGTTCCTCTTGGAAGTTATCCTGTCGCTCATATCACATATGAGCTGAATGTCTTAG 808
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 661 CAAAAGTTCCTCTTGGAAGTTACCCTGTCGCTCATATCACATACGAGCTGAATGTCTTAG 720
Query 809 GATCCCGGGGACCAAGAAAGATGCAATGTCTTATGGACACAATACCTACAAGCACAATGG 868
||||||||||||||||||||||||||||| | ||||||||||||||||||| | ||||||
Sbjct 721 GATCCCGGGGACCAAGAAAGATGCAATGTGTAATGGACACAATACCTACAAACGCAATGG 780
Query 869 AG-CCTCAAGGAGTAGCTTCAGAACCATCAGAGTTTCCCTTACTCGGTACTCGGTCAACC 927
|| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 781 AGTCC-CAAGGAGTAGCTTCAGAACCATCAGAGTTTCCCTTCCTCGGTACTCGGTCAACT 839
Query 928 TTATCCAGGTCTCAGTCAAAACCATTACGCAGTAGCTCAAGCCACCTGAAAGAAACACCA 987
|| ||||||||||| || |||||||||||| | |||||||||||||||||||||||||||
Sbjct 840 TTCTCCAGGTCTCAATCGAAACCATTACGCTGCAGCTCAAGCCACCTGAAAGAAACACCA 899
Query 988 TTAGTGCTGAGCAACAAGACACCACGGTGGCACGAGCAGCTACGCTGCTGGTGCTTGAAT 1047
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 900 TTAGTGCTGAGCAACAAGACACCACGGTGGCACGAGCAGCTACGTTGTTGGTGCTTGAAT 959
Query 1048 TTCCATGGCCGTGTCACAGTAGCGTCAGTGAAGAACTTTCAGCTCGTGGCA--G-CAGGA 1104
||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |
Sbjct 960 TTCCATGGCCGTGTCACAGTAGCATCAGTGAAGAACTTTCAGCTCGTGGCATCGGCAGCA 1019
Query 1105 GCTAGCTGTGGCAGTGGCACGGGAATGTCACCGGAGAGGCAGAGCGAGCGGATTATATTG 1164
|||||| ||||| |||| |||||| ||||||| |||||||||| ||||||||||||||||
Sbjct 1020 GCTAGCGGTGGCGGTGGGACGGGATTGTCACCAGAGAGGCAGAACGAGCGGATTATATTG 1079
Query 1165 CAGTTTGGGAAAGTCGGGAAAGATATGTTCACGATGGATTATGGATACCCGATCTCAGCT 1224
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1080 CAGTTTGGGAAAGTCGGGAAAGATATGTTCACGATGGATTATGGCTACCCGATCTCAGCT 1139
Query 1225 TTCCAGGCTTTTGCCATTTGCTTGAGCAGCTTTGAGACTAGAATCGCTTGTGAATGATTT 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTCCAGGCTTTTGCCATTTGCTTGAGCAGCTTTGAGACTAGAATCGCTTGTGAATGATTT 1199
Query 1285 ACAAGACTTTGTTAAGA 1301
| |||||||||||||||
Sbjct 1200 ATAAGACTTTGTTAAGA 1216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55154674760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5