BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G18690.1

Length=688
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941396 jgi|Araly1|941396|scaffold_601940.1                        436    7e-122


> Ahg941396 jgi|Araly1|941396|scaffold_601940.1
Length=415

 Score =  436 bits (236),  Expect = 7e-122
 Identities = 368/426 (86%), Gaps = 32/426 (8%)
 Strand=Plus/Plus

Query  58   TCATCATTTAAACCAAAAACAAAATGGctttttcttttctcaataa-a-ct-tc-tcatc  113
            |||||||||||| | ||||  |||||||||| ||||||||||| || |  | || |||||
Sbjct  1    TCATCATTTAAA-C-AAAA-GAAATGGCTTTCTCTTTTCTCAA-AACATTTCTCATCATC  56

Query  114  atcttcatcttcatct-tcatctc---t-c-tctct-tcatcttctccgacaatttc-tc  165
            |||||||||||||||| || ||||   | | | ||| || ||||||||||| ||||| ||
Sbjct  57   ATCTTCATCTTCATCTCTC-TCTCATTTCCTTGTCTCTCTTCTTCTCCGACCATTTCTTC  115

Query  166  tcGTCCAACAGCTTTCACCGGAGATCGCCCCTCTCCTCCCTTCCCCCGGAGACGCTTTAC  225
             | ||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct  116  -CTTCCAACAGCTTTCGCCTGAGATCGCCCCTCTCCTCCCTTCCCCCGGTGACGCTTTAC  174

Query  226  CTTCAGACGATGGCAGCGGCACAATCCCATCTTCACCAAGCCCTCCTGATCCCGACACTA  285
            |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  175  CTTCAGGCGACGGCAGCGGCACAATCCCATCTTCACCAAGCCCTCCTGATCCCGACACTA  234

Query  286  ACGACGGCTCCTACCCTGACCCGTTGGCAttct-ctccttttgcttctccgccggtttct  344
            |||||||||||||||||||||||||||| || | |||| || ||||| || |||||||||
Sbjct  235  ACGACGGCTCCTACCCTGACCCGTTGGCCTT-TGCTCCCTTCGCTTCGCCACCGGTTTCT  293

Query  345  tctccttctcctccgccgtctcttccttccgccgGAGTCTTACTCATCTCTC-TTATCAT  403
            |||||||||||   |||||||| |||| |||||||||| |||||| || | | ||||| |
Sbjct  294  TCTCCTTCTCC---GCCGTCTCATCCTCCCGCCGGAGTATTACTCCTCAC-CGTTATCTT  349

Query  404  CTCCTCCGC--C--TCG---TTCCTAGCGTTATAACACTACTATAGTTCACTTCGCTTAT  456
            |||||||||  |  |||   ||| |||||| |||||||||||||||||||||||||||||
Sbjct  350  CTCCTCCGCGTCGCTCGGGCTTCGTAGCGTAATAACACTACTATAGTTCACTTCGCTTAT  409

Query  457  CCATCA  462
             |||||
Sbjct  410  ACATCA  415



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25275493971


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5