BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18710.1
Length=1918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488759 jgi|Araly1|488759|fgenesh2_kg.6__1893__AT5G18710.1 1208 0.0
Ahg488760 jgi|Araly1|488760|fgenesh2_kg.6__1894__AT5G18740.1 198 1e-49
Ahg941405 jgi|Araly1|941405|scaffold_601949.1 176 5e-43
Ahg941401 jgi|Araly1|941401|scaffold_601945.1 172 7e-42
Ahg941400 jgi|Araly1|941400|scaffold_601944.1 152 9e-36
> Ahg488759 jgi|Araly1|488759|fgenesh2_kg.6__1893__AT5G18710.1
Length=1701
Score = 1208 bits (654), Expect = 0.0
Identities = 786/849 (93%), Gaps = 11/849 (1%)
Strand=Plus/Plus
Query 1081 ACGACT-GGAAAGAAGCAGAAGGTGTGCCTCGAGGTGCTTATGAGCTGGATCCTACTGCA 1139
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 853 ACGACTGGGAAAGAAGCAGAAGGTGTGCCTCGAGGTGCTTATGAGCTGGATCCCGCTGCA 912
Query 1140 TTACCAACAAATATCAAAGAGATAGACGTCCCTTTGCATCTACTAGCAGAGCCTAAAGAG 1199
|||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| |
Sbjct 913 TTACCAGCAAATATCAAAGAGATAGATGTCCCTTTACATCTACTAGCAGAGCCTAAAGTG 972
Query 1200 TCAAACTCCGAGAATAATACGTATTCGCAATGCGTGCACTTTGCTTGCAAGGGAAGGAC- 1258
||||| ||||||||||||||| | ||||||||||||||||||||| | |||||||||||
Sbjct 973 TCAAATTCCGAGAATAATACGCAATCGCAATGCGTGCACTTTGCTAGTAAGGGAAGGACT 1032
Query 1259 TTAGAAACAGGCCAAGTCTGGTCATTTTGCAGTGGTGACGATTACTTGCCCCGGTACTAT 1318
|| |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1033 TTCCAAACTGGCCAAGTCTGGTCATTTTGCAGTGGTGAGGATTATTTGCCCCGGTACTAT 1092
Query 1319 GGCAAGATTCAGAAAATCACATTTGTTCAGGCATTTGAGCAGGATCCAGTAGTTAAATTG 1378
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1093 GGCAAGATTCAGAAAATCACATTTGTTCAGGCATTTGAGCAGGATCCGGTAGTTAAATTG 1152
Query 1379 CATGTAGGTCGGCTAAAGGCTACAGTAATCAAAGGCGTCATCCAGTGGATTGACAAGAGA 1438
|||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||
Sbjct 1153 CATGTAGGTCGGCTAAAGGCTACACCAACCAAAGGTGTCATCCAGTGGATTGACAAGAGA 1212
Query 1439 ATGCCCACTGGCTGTGGGAGTTTCCGGGCAACTAAAGCTCTTGAAATATTCACTGATCTT 1498
||||||| ||||||||||| |||||||||||| |||||||||||||||||||| ||||||
Sbjct 1213 ATGCCCATTGGCTGTGGGAATTTCCGGGCAACAAAAGCTCTTGAAATATTCACCGATCTT 1272
Query 1499 GATGTATTTTCACGTCAGATTAGCTCAGA-------GG--ATGGAAATAATTACAGTATC 1549
|||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct 1273 GATGTATTTTCACGTCAGATTAGCCCAGACTCATCCGGGGATGGAAATAATTACAGTATC 1332
Query 1550 ATGCCAAAGACTGGTAATATTTGGGCTATTTACAGAAACTGGAGTAATGACATTGATGTG 1609
||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1333 ATGCCAAAGACTGGTGATATCTGGGCTATCTACAGAAACTGGAGTAATGACATTGATGTC 1392
Query 1610 GTTGATCTTCAATCCCAAACTTATGATCTTGTGGAAATTCTGGATGATAAACAGGACTAC 1669
||||||||||||||||| || |||||| |||||||| |||||||||||||||||||||||
Sbjct 1393 GTTGATCTTCAATCCCAGACATATGATATTGTGGAAGTTCTGGATGATAAACAGGACTAC 1452
Query 1670 AAGGTTCTGTTGTTGGCACCTGATGGTGGCTTTAAATTAGCAGATCGTGCAGGTTTTGGT 1729
||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1453 AAGGTTCTGCTGTTGGCGCCTGATGGAGGCTTTAAATTAGCCGATCGTGCAGGTTTTGGT 1512
Query 1730 TCGGTGTATTTAGCTGCTACTGAGCACTGGATTGATGGCAAGGATGTAAGATTCACAATC 1789
|||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||
Sbjct 1513 TCGGTGTATTTAGCTGCTACTGAGCACTGGATCGATGGCGCGGATGTGAGATTCACAATC 1572
Query 1790 CCGAAATCCGAACTACTCAGATTCTCGCATCAAGTTCCAACTTCGAAAGTAACAAAAGAG 1849
|||||| | ||||| ||||||||||| ||||||||||| ||||||||||| | | |||||
Sbjct 1573 CCGAAAGCTGAACTGCTCAGATTCTCCCATCAAGTTCCTACTTCGAAAGTGAGAGAAGAG 1632
Query 1850 ATACATGGAGCTTTGCAAGAAGTCTATGAACCTAATATTGAGGCATTACCAGTGAACTTG 1909
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1633 ATACATGGAGCTTTGCAAGAAGTCTATGAACCTAATATTGAGGCATTACCCGTTAACTTG 1692
Query 1910 ATTCTATGA 1918
|||||||||
Sbjct 1693 ATTCTATGA 1701
Score = 1114 bits (603), Expect = 0.0
Identities = 777/861 (90%), Gaps = 12/861 (1%)
Strand=Plus/Plus
Query 97 GAGATCATATTGGAGGAGCCGCTCAAGGCTAAAGCTGTGATGGAAAAGACTAACCCTGAT 156
|||||||||||||||||| | ||||||||| ||||||||||||| | |||||||||||||
Sbjct 1 GAGATCATATTGGAGGAGTCACTCAAGGCTGAAGCTGTGATGGAGAGGACTAACCCTGAT 60
Query 157 GGTGCTCAAGAGCTTCCTTCATCTGGTCTCGAACAGGCTCCACTTCATCTCAATCAGAAA 216
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GGTGCTCAAGAGCTTCCTTCATCTGGTCTCGAACAGGCTCCACTTCATCACAATCAGAAG 120
Query 217 TCTGGTgagaagagaaagagagaaggattggtgagaagagaaagagaagctggaaacagc 276
||||||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||
Sbjct 121 TCTGGTGAGAAGAGAAAGAGAGAAGGATTGGTGAGAAAAGAATGTGAAACTGGAAACAGC 180
Query 277 agcgagaatgaagaagTTATTATTGTTGGTGACACTAAAGCTATAGAAGATTTATGTTTT 336
||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 AGCGAGAGTGAACAAGTTATTATAGTTGGTGACACTAAAGCTATAGAAGATTTATGTTTT 240
Query 337 GATGGAGGAGAGCAGTCTCAGAAGTCTGTGTATAGCAAGCGGCAAGCTTTCGTTGCACAG 396
|||||||||||||||||||||| ||||||||||||||||| ||||||||| || |||
Sbjct 241 GATGGAGGAGAGCAGTCTCAGAGGTCTGTGTATAGCAAGCAACAAGCTTTCAATGTACAA 300
Query 397 AGCAACAGAAATGGTGAAGGGTCTTTGGGCAAGGAAGAAGCAGGAGAAGAACCAGAAAGA 456
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 301 AGCAACAGAAATGGTGAAGGGTCTTTGGAAAAGGAAGAAGTAGGAGAAGAACCAGAAAGA 360
Query 457 GCAAAGTAGGTTTTAGCTTTCAATGACTTTGATAAGCTGAGGGAAG-AAGTACACTTTGA 515
|||||| ||||||||||||||||||||||||||||||||||| ||| ||| | | ||||
Sbjct 361 GCAAAGCAGGTTTTAGCTTTCAATGACTTTGATAAGCTGAGGAAAGTAAGCA-ATTTTGC 419
Query 516 AGTTGGCCAGACCTGGGCTCTTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCA 575
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGTTGGCCAGACTTGGGCTCTTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCA 479
Query 576 GATCA-AAGAAGTTTTTGTTTCTGGTTTTAATGTTACTGTCACGTGGCTTGAGCCTGATC 634
||||| || | |||| | |||||| ||| |||||| |||||| ||||||||||||||||
Sbjct 480 GATCAGAACA-GTTTCAGCTTCTGGGTTTGATGTTAGTGTCACATGGCTTGAGCCTGATC 538
Query 635 CATATGACGAGGAACCAATACAGAGGTATGAAAAAGACTTGCCTGTTTCTGTTGGTAGGT 694
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 539 CATATGACGAGGAACCAATACAGAAGTATGAAAAAGACTTGCCTGTTTCTGTTGGTAGGT 598
Query 695 TTAAACTTGGAAAAGATGAGACTATTAAAGATCACACAAGGTTTTCTCACTTGGTTCATT 754
||||| |||||||||||||||||||||||||||||| |||||| |||||| ||||||||
Sbjct 599 TTAAAATTGGAAAAGATGAGACTATTAAAGATCACAGAAGGTTCTCTCACGAGGTTCATT 658
Query 755 GCAATAAAGGAAGTAGCGCGGGTAAATTCTGTATATACCCAAGAATAGGAGAGACATGGG 814
||||| ||| || |||||||||||||||| || |||| ||||||| ||||||||||||||
Sbjct 659 GCAATGAAGTAACTAGCGCGGGTAAATTCAGTTTATATCCAAGAAAAGGAGAGACATGGG 718
Query 815 CTATCTTCAAGGGTCGCTACAA-ATCTCTCATGACGAGCTTTGACATCAACTGGTTAGCT 873
||||| |||||||||||||||| || | | | | || || || || |||||||||
Sbjct 719 CTATCATCAAGGGTCGCTACAAGAT-TA--A-GT--A-CTCGGAAATTAATTGGTTAGCT 771
Query 874 GATCCCGGTTCTCCCTGGAAATATCAGTACGCATTTGTCGAAATCGTGTCAGAAGATGCT 933
||| || |||||| ||||||||||| |||||||||||||||||||||||| |||||
Sbjct 772 GATGCCAATTCTCCAAATAAATATCAGTATGCATTTGTCGAAATCGTGTCAGAAAATGCT 831
Query 934 GGATCAAGTGACCCTTTATCT 954
||| |||| || | |||||||
Sbjct 832 GGACCAAGGGAACATTTATCT 852
> Ahg488760 jgi|Araly1|488760|fgenesh2_kg.6__1894__AT5G18740.1
Length=1896
Score = 198 bits (107), Expect = 1e-49
Identities = 189/227 (83%), Gaps = 11/227 (5%)
Strand=Plus/Plus
Query 474 TTTCAATGACTTTGATAAGCTGAGGGAAGAAGTACACTTTGAAGTTGGCCAGACCTGGGC 533
||| || ||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 622 TTT-AACGACTTTGATAAGCTGAGGGAAGAAGTAAACTTTGAAGTTGGGCAGACCTGGGC 680
Query 534 TCTTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCAGATCA-AAGAAGTTTTTG 592
| ||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct 681 TGTTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCAGATCAGAA-AAGTTTCAG 739
Query 593 TTTCTGGTTTTAATG-TTACTG-TCACGTGGCTTGAGCCTGATCCATATGACGAGGAACC 650
| || ||||| | | ||| | | || | || ||||| |||||| ||| ||| ||
Sbjct 740 CTCCTTGTTTTGA-GCTTAG-GATTACATATCTAGAGCCAGATCCAAATGGTGAGAAAG- 796
Query 651 AA-TACAGA-GGTATGAAAAAGACTTGCCTGTTTCTGTTGGTAGGTT 695
| | || | ||| |||| |||||||||||||||||||||||| |||
Sbjct 797 AGCTCCA-ATGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTATGTT 842
> Ahg941405 jgi|Araly1|941405|scaffold_601949.1
Length=1763
Score = 176 bits (95), Expect = 5e-43
Identities = 185/227 (81%), Gaps = 12/227 (5%)
Strand=Plus/Plus
Query 475 TTCAATGACTTTGATAAGCTGAGGGAAGAAGTACACTTTGAAGTTGGCCAGACCTGGGCT 534
||||| |||||||| |||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 394 TTCAACGACTTTGAAAAGCTGAGGGAAGAAGTAAACTTTGCGGTTGGTCAGACCTGGGCT 453
Query 535 CTTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCAGATCA-AAGAAGTTTTTGT 593
||||||||||||||||||||||||||||||||||||||| ||||| || |||||| |
Sbjct 454 ATTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCGGATCATAA-AAGTTTCAGC 512
Query 594 TTCTGGTTTTAATGTTACTG-TCACGTGGCTTGAGCCTGATCCA--TA-TGACGAGGAAC 649
| || ||||| | ||| | |||| | || ||||| |||||| || ||| | ||
Sbjct 513 TCCTTGTTTTGGTCTTAG-GATCACATATCTAGAGCCAGATCCAGGTAATGAAAAAGAG- 570
Query 650 CAATAC-AGAGGTATGAAAAAGACTTGCCTGTTTCTGTTGGTAGGTT 695
|| || | ||| |||| |||||||||||||||||||||||| |||
Sbjct 571 -AA-ACTAT-GGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTAAGTT 614
> Ahg941401 jgi|Araly1|941401|scaffold_601945.1
Length=1768
Score = 172 bits (93), Expect = 7e-42
Identities = 278/364 (76%), Gaps = 25/364 (7%)
Strand=Plus/Plus
Query 474 TTTCAATGACTTTGATAAGCTGAGGGAAGAAG-TACACTTTGAAGTTGGCCAGACCTGGG 532
||| |||||||||| ||| ||||||||||||| || |||||| ||||||||||||||||
Sbjct 297 TTT-AATGACTTTGGTAATCTGAGGGAAGAAGTTA-ACTTTGCGGTTGGCCAGACCTGGG 354
Query 533 CTCTTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCAGATCA-AAGAAGTTTTT 591
|||||||||||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 355 CTCTTTATGATACAACAGATGGGATGCCTAGATTGTATGCTCAGATCAGAA-AAGTTTCA 413
Query 592 GTTTCTGGTTTTAATG-TTACTG-TCACGTGGCTTGAGCCTGATCCAT-ATGACGAGGAA 648
| | || ||| | ||| | |||| | || ||||| ||||| | |||| ||| ||
Sbjct 414 GCTCCTTCTTTCGG-GCTTAG-GATCACATATCTAGAGCCAGATCC-TGATGATGAGAAA 470
Query 649 CCAA-TACAGAGGTATGAAAAAGACTTGCCTGTTTCTGTTGGTAGGTTTAAACTTGGA-A 706
| | ||| ||| |||| |||||||||||||||||||||||| ||| | ||||| |
Sbjct 471 G-AGCTCCAGTGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTAAGTTCAGGCTTGGCCA 529
Query 707 AAGATGAGA-CTATTAAAGATCACACAAGGTTTTCTCA-CTTGGTTCATTGCAATAAAGG 764
||| | ||| | | ||||||| | || || ||||| ||| | || |||||| ||||
Sbjct 530 AAG-TCAGAAC-ACGAAAGATCGTTCCAGATTCTCTCATCTTA-TCCAATGCAATGAAGG 586
Query 765 AAGTAGCGCGGGTAAAT-TC--TGTATATACCCAAGAATAGGAGAGACATGGGCTATCTT 821
||| | | | || | || ||| | | |||||||| ||| ||||| |||||| | ||
Sbjct 587 AAGCAACACAAGTCG-TCTCACTGTTT-T-CCCAAGAAAAGGTGAGACGTGGGCTCTGTT 643
Query 822 CAAG 825
||||
Sbjct 644 CAAG 647
> Ahg941400 jgi|Araly1|941400|scaffold_601944.1
Length=1757
Score = 152 bits (82), Expect = 9e-36
Identities = 180/226 (80%), Gaps = 12/226 (5%)
Strand=Plus/Plus
Query 474 TTTCAATGACTTTGATAAGCTGAGGGAAGAAGTACACTTTGAAGTTGGCCAGACCTGGGC 533
||| || ||||||| ||||||||||||||||||| |||||| ||||| |||||||||||
Sbjct 243 TTT-AACGACTTTGGTAAGCTGAGGGAAGAAGTAAACTTTGCGGTTGGTCAGACCTGGGC 301
Query 534 TCTTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCAGATCAAAGAA-GTTTTTG 592
||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |
Sbjct 302 TCTTTATGATACAAC---TGGGATGCCTAGATTGTATGCTCAGATCAG-GAAAGTTTCAG 357
Query 593 TTTCTGGTTTTAATGTTACTG-TCACGTGGCTTGAGCCTGATCCATATGACGAGGAACCA 651
| || ||||| | ||| | | || | || ||||| |||||| ||| ||| || |
Sbjct 358 CTCCTTGTTTTGGTCTTAG-GATTACATATCTAGAGCCAGATCCAAATGGTGAGAAAG-A 415
Query 652 A-TACAGA-GGTATGAAAAAGACTTGCCTGTTTCTGTTGGTAGGTT 695
| || | ||| |||| |||||||||||||||||||||||| |||
Sbjct 416 GCTCCA-ATGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTATGTT 460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72066743540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5