BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18720.1
Length=1838
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941400 jgi|Araly1|941400|scaffold_601944.1 1546 0.0
Ahg941404 jgi|Araly1|941404|scaffold_601948.1 1205 0.0
Ahg488760 jgi|Araly1|488760|fgenesh2_kg.6__1894__AT5G18740.1 1000 0.0
Ahg941405 jgi|Araly1|941405|scaffold_601949.1 822 0.0
Ahg941399 jgi|Araly1|941399|scaffold_601943.1 566 2e-160
Ahg941401 jgi|Araly1|941401|scaffold_601945.1 429 3e-119
Ahg488759 jgi|Araly1|488759|fgenesh2_kg.6__1893__AT5G18710.1 174 2e-42
> Ahg941400 jgi|Araly1|941400|scaffold_601944.1
Length=1757
Score = 1546 bits (837), Expect = 0.0
Identities = 1228/1412 (87%), Gaps = 45/1412 (3%)
Strand=Plus/Plus
Query 143 CTTGTGCTGAGAGTGTTGGTAAGAAGAGAAAGAGGAACGAGTATGATGATAGTTGCATTG 202
||||||||| | ||||||| ||||||||||||||||| |||||| ||||||||||| ||
Sbjct 64 CTTGTGCTGTGTGTGTTGGCGAGAAGAGAAAGAGGAACCAGTATGGTGATAGTTGCAATG 123
Query 203 CTAGATAT-ATCGGTGCTGTAAGTAACAATAGAAGAGGGTCTAGTGACAATGGAGATGCA 261
|||| || | |||| |||||||||||||||||||||| |||| ||| ||||||||| ||
Sbjct 124 ATAGAAATCA-CGGTCCTGTAAGTAACAATAGAAGAGGATCTAATGATAATGGAGATACA 182
Query 262 TGCATA--GGAGAAGAGTCGG--C----ACAAGCAAACATTTCTGAATGTGTTGTTGGTC 313
| | | ||||||||||||| | |||| |||| ||||||||| | ||||||||
Sbjct 183 -G-AAAGGGGAGAAGAGTCGGTACAAATACAACCAAAGATTTCTGAA--T-CTGTTGGTC 237
Query 314 CAAAGTTTAACGACTTTAGTAAGCTGAGGGAAGAAGCAAACTTTAAAGTTGGTCAGACCT 373
||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||
Sbjct 238 CAAAGTTTAACGACTTTGGTAAGCTGAGGGAAGAAGTAAACTTTGCGGTTGGTCAGACCT 297
Query 374 GGGCGCTTTATGATACAATGGATGGGATGCCTAGATTGTATGCTCAGATCAGGAAAGTTT 433
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 298 GGGCTCTTTATGATACAA---CTGGGATGCCTAGATTGTATGCTCAGATCAGGAAAGTTT 354
Query 434 CAGCTCCTTGTTTTGGTCTTATGATTACATATCTAGAGCCAGATTCAAATGATGAGAAAG 493
||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||
Sbjct 355 CAGCTCCTTGTTTTGGTCTTAGGATTACATATCTAGAGCCAGATCCAAATGGTGAGAAAG 414
Query 494 AGCTCCAATGGTTTGAAAAAGACTTGCCTGTTTCTGTTGGTAACTTCAGGCTTGGGGAAA 553
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 415 AGCTCCAATGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTATGTTCAGGCTTGGGGAAA 474
Query 554 ATAAGAGCACAAAAGATCGTTCAATATTTTCACATGTTATTCATTGCAATGAACGGAGCA 613
||||||||||| ||||||| |||||||||||||||||||||||||||| |||||| ||||
Sbjct 475 ATAAGAGCACACAAGATCGGTCAATATTTTCACATGTTATTCATTGCAGTGAACGAAGCA 534
Query 614 ACGCTAGTTGTTTCAGCATCACTTGTCGTTTCATCAGTACTTATCATTTTAGTGTATCCC 673
|| || |||||||||| |||||||||||||||||| |||| |||||||||||||||||
Sbjct 535 ACACTCTTTGTTTCAGCGTCACTTGTCGTTTCATCAACACTTGTCATTTTAGTGTATCCC 594
Query 674 CTAGAAATGGA-GAGACTTGGGCGCTTTTCAAGAACTGGGATATTAAGTGGTCTTTAAAA 732
||||||| | | ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 595 CTAGAAAAG-ACGAGACTTGGGCGCTTTTCAAGAACTGGGATATTAAGTGGTCTTCAGAG 653
Query 733 CCAGATTCTCACCGCAAATATGAGTATGAATTTGTCAAGATTCTGTCAGATTACGCTGAT 792
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||
Sbjct 654 CCAGATTCTCACCGCAAATTTGAGTATGAATTTGTCGAGATTCTGTCAGATTACGCGGAT 713
Query 793 GAAACTGGTGTATATGTTGCATACTTGCATAAAGCAAAAGGATTTGCTAGTGTGTTCTTT 852
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GAAGCTGGTGTATATGTTGCATACTTGCATAAAGCAAAAGGATTTGCTAGTGTGTTCTTC 773
Query 853 CGAATGGGAAGAGGTTATGAAGGTATATTTCGTATTTTACCTCAGAGTTTGTATCGGTTC 912
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 774 CGAATGGGAACTGGTTATGAAGGTATATTTCGTATTTTACCTCACAGTTTGTATCGGTTC 833
Query 913 TCCCATAGGATTCCTTCCTT-----TGACTGGAATTGAAGGAAAAGGTGTGCCAAAAGAT 967
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 834 TCCCATAGGGTTCCTTCCTTCAAACTGACTGGAATTGAAGGAAAAGGTGTGCCAAAAGAT 893
Query 968 GCTTACGAGCTGGACAAAGCTGCGTTACCAGAAACAATCGAAGAGTTCATCGTGCCTTTA 1027
||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| | |
Sbjct 894 GCTTACGAGCTGGACCAAGCTGCGTTACCAGAATCAATCGAAGAGATCATCGTGCCGTCA 953
Query 1028 GACTCTGAGAGTAATATAAAGTCTAAACGCCAAGATATATACTTTGCTAGCAAGGGTAAT 1087
||||||||||| || ||||||||||||| |||| || ||||||||||| ||||| ||
Sbjct 954 AACTCTGAGAGTGATTTAAAGTCTAAACGTCAAGCCATCTACTTTGCTAGGAAGGGGAAG 1013
Query 1088 GTTTTTCTGACTGGCCAGATTTGGTCATTTTACTGTGGTGATGATTC-TTTGCCTCTGTA 1146
||||||| | |||||||||||||||||||| | || | || | ||| ||||||||
Sbjct 1014 GTTTTTCAAATTGGCCAGATTTGGTCATTTTGCGGTCTTTATCAAGAGTTT-CCTCTGTA 1072
Query 1147 CTACGGTAGGATTCAGAAGATCACTTTTACCCAGG--CATTTATGCAGGATCCTGTATGT 1204
|||||||||||||||||||||||||||||| |||| || | |||| | | |||| |
Sbjct 1073 CTACGGTAGGATTCAGAAGATCACTTTTACTCAGGTACACG-A-GCAGAAGGCAGTATAT 1130
Query 1205 AAATTACATATAGGTCGGCTAAAGGCTACTCGTTTCCCTGCGGATGTTATCGACTGGGAA 1264
||||||||| || ||| |||||||||||||||| ||| |||||| ||||| | |||
Sbjct 1131 AAATTACATGTAAGTCCTTTAAAGGCTACTCGTTTTCCTTTGGATGTGATCGAGTATGAA 1190
Query 1265 AACAAGG-GAACGCCTGTTGGTTGTGGAACTTTCTACGCAAGAAAAGCTCTAGAAATAAT 1323
||||| || ||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct 1191 GACAAGAAGAT-GCCTGTTGGTTGTGGAACTTTCTACGCGAGAAAAGTTCTCGAAATAAT 1249
Query 1324 CACCCCA-AGTGAGGTTTCACTTCAGATAACT-CCTCAAACCTCTATTGATGGCATTGAA 1381
|| ||| | ||| ||||||| |||||| | ||||||| ||| || ||||| | ||||
Sbjct 1250 CAGTCCAGA-TGATGTTTCACAACAGATAG-TGCCTCAAATCTCCATGGATGGAAATGAA 1307
Query 1382 TATACCATTCTCCCCAAGATTGGCGAAGTTTGGGTGATATACAAATACTGGAGTCG--TG 1439
||||||||||| || |||||||| ||||||||||||||||||| || ||||||| | |
Sbjct 1308 TATACCATTCTGCCTAAGATTGGGGAAGTTTGGGTGATATACAGATTCTGGAGT-GAAT- 1365
Query 1440 ACATGGA-TGCAGAGGACTTTAGTTT-TGCTTCTTATAACATTGTTGAAATTCTTGATGA 1497
||| ||| | | || | || |||| ||| || || | ||||||||||||||||||||
Sbjct 1366 ACAGGGAATTC-GACAAGGTTGGTTTATGCAGCT-ATGATATTGTTGAAATTCTTGATGA 1423
Query 1498 CACCTTGGAGTATAAGGTCCAATTGCTGAAGC 1529
||| ||||| |||||||||||| ||||| |||
Sbjct 1424 CACATTGGACTATAAGGTCCAACTGCTGGAGC 1455
> Ahg941404 jgi|Araly1|941404|scaffold_601948.1
Length=2063
Score = 1205 bits (652), Expect = 0.0
Identities = 893/1004 (89%), Gaps = 37/1004 (4%)
Strand=Plus/Plus
Query 282 ACAAGCAAACATTTCTGAATGTGTTGTTGGTCCAAAGTTTAACGACTTTAG-TAAGCTGA 340
|||| |||| | ||||| | || || |||||||||||||||||||||| | |||||||
Sbjct 501 ACAACCAAAGACTTCTG--TATG-TGCTGGTCCAAAGTTTAACGACTTT-GAAAAGCTGA 556
Query 341 GGGAAGAAGCAAACTTTAAAGTTGGTCAGACCTGGGCGCTTTATGATACAATGGATGGGA 400
||||||||| ||||||| |||||||||||||||||| |||||||||||| ||||||
Sbjct 557 GGGAAGAAGTAAACTTTGCAGTTGGTCAGACCTGGGCTCTTTATGATACAGCAGATGGGT 616
Query 401 TGCCTAGATTGTATGCTCAGATCAGGAAAGTTTCAGCTCCTTGTTTTGGTCTTATGATTA 460
||||||||||||||||||| |||||||||||||||||||||| ||||| |||| ||| |
Sbjct 617 TGCCTAGATTGTATGCTCATATCAGGAAAGTTTCAGCTCCTTCCTTTGGGCTTAGGATCA 676
Query 461 CATATCTAGAGCCAGATTCAAATGATGAGAAAGAGCTCCAATGGTTTGAAAAAGACTTGC 520
||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 677 CATATATAGAGCCAGATCCAGATGATGAGAAAGAGCTCCAATGGTTTGAAGAAGACTTGC 736
Query 521 CTGTTTCTGTTGGTAACTTCAGGCTTGGGGAAAATAAGAGCACAAAAGATCGTTCAATAT 580
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 737 CTGTTTCTGTTGGTAAGTTCAGGCTTGGGGAAAATAAGAGCACAAAAGATCGTTCCATGT 796
Query 581 TTTCACATGTTATTCATTGCAAT----G----AAC---------G---G-AGCAACGCTA 619
||||||||||||||||||||||| | ||| | | |||||| ||
Sbjct 797 TTTCACATGTTATTCATTGCAATGAACGAAACAACGAGTTGAATGAACGAAGCAACACTC 856
Query 620 GTTGTTTCAGCA-TCACTTGTCGTTTCATCAGTACTTATCATTTTAGTGTATCCCCTAGA 678
|||||||||| | |||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 857 GTTGTTTCAG-ATTCACTTGTCGTTTCATCAACACTTGTCATTTTAGTGTATCCCCTAGA 915
Query 679 AATGGAGAGACTTGGGCGCTTTTCAAGAACTGGGATATTAAGTGGTCTTTAAAACCAGAT 738
|| || ||||| ||||||||||||||||||||||||||||| ||||||| | | ||||||
Sbjct 916 AAAGGCGAGACATGGGCGCTTTTCAAGAACTGGGATATTAATTGGTCTTCAGAGCCAGAT 975
Query 739 TCTCACCGCAAATATGAGTATGAAT-TTGTCAAGATTCTGTCAGATTACGCTGATGAAAC 797
|||||||||||||||||||||| || ||||| || ||||||||||||||||||||||| |
Sbjct 976 TCTCACCGCAAATATGAGTATG-ATATTGTCGAGGTTCTGTCAGATTACGCTGATGAAGC 1034
Query 798 TGGTGTATATGTTGCATACTTGCATAAAGCAAAAGGATTTGCTAGTGTGTTCTTTCGAAT 857
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1035 TGGTGTATATGTTGCATACTTGCATAAAGCAAAAGGGTTTGCTAGTGTGTTCTTTCGAAT 1094
Query 858 GGGAAGAGGTTATGAAGGTATATTTCGTATTTTACCTCAGAGTTTGTATCGGTTCTCCCA 917
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 GGGAACTGGTTATGAAGGCATATTTCGTATTTTACCTCAGAGTTTGTATCGGTTCTCCCA 1154
Query 918 TAGGATTCCTTCC-T----TTGACTGGAATTGAAGGAAAAGGTGTGCCAAAAGATGCTTA 972
|||| |||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 TAGGGTTCCTTCCTTCAAATTGACTGGAATTGAAGGAAAAGGTGTGCCAAAAGATGCTTA 1214
Query 973 CGAGCTGGACAAAGCTGCGTTACCAGAAACAATCGAAGAGTTCATCGTGCCTTTAGACTC 1032
|||||||||| |||||||||||||||||||||| |||||| |||||||||||| | || |
Sbjct 1215 CGAGCTGGACCAAGCTGCGTTACCAGAAACAATAGAAGAGATCATCGTGCCTTCAAACGC 1274
Query 1033 TGAGAGTAATATAAAGTCTAAACGCCAAGATATATACTTTGCTAGCAAGGGTAATGTTTT 1092
||||||| || ||| | |||||||||||| || ||||||||||||||||| || |||||
Sbjct 1275 TGAGAGTGATTTAACGCCTAAACGCCAAGCCATCTACTTTGCTAGCAAGGGGAAGGTTTT 1334
Query 1093 TCTGACTGGCCAGATTTGGTCATTTTACTGTGGTGATGATT-CTTTGCCTCTGTACTACG 1151
|| |||||||||||||||||||| |||| ||||| ||||| ||| |||||||||||||
Sbjct 1335 TCAGACTGGCCAGATTTGGTCATATTACAGTGGTAATGATGACTT-GCCTCTGTACTACT 1393
Query 1152 GTAGGATTCAGAAGATCACTTTTACCCAGGCATTTATGCAGGATCCTGTATGTAAATTAC 1211
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1394 GTAGGATTCAGAAGATCACTTTTACTCAGGCATTTATGCAGGATCCTGTATGTAAACTAC 1453
Query 1212 ATATAGGTCGGCTAAAGGCTACTCGTTTCCCTGCGGATGTTATC 1255
| ||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 1454 ACATACGTCGGCTAAAGGCTACTCGTTTCCCTGAGTATGTTATC 1497
> Ahg488760 jgi|Araly1|488760|fgenesh2_kg.6__1894__AT5G18740.1
Length=1896
Score = 1000 bits (541), Expect = 0.0
Identities = 692/762 (91%), Gaps = 22/762 (3%)
Strand=Plus/Plus
Query 288 AAACATTTCTGAATGTG-TTGTTGGTCCAAAGTTTAACGACTTTAG-TAAGCTGAGGGAA 345
|||||||| || ||||| | ||| | ||| |||||||||||| | |||||||||||||
Sbjct 594 AAACATTTTTGGATGTGCTGGTT--T-GAAA-TTTAACGACTTT-GATAAGCTGAGGGAA 648
Query 346 GAAGCAAACTTTAAAGTTGGTCAGACCTGGGC-GCTTTATGATACAATGGATGGGATGCC 404
|||| ||||||| ||||||| ||||||||||| | ||||||||||| |||||||||||||
Sbjct 649 GAAGTAAACTTTGAAGTTGGGCAGACCTGGGCTG-TTTATGATACAGTGGATGGGATGCC 707
Query 405 TAGATTGTATGCTCAGATCAGGAAAGTTTCAGCTCCTTGTTTTG-GTCTTATGATTACAT 463
||||||||||||||||||||| |||||||||||||||||||||| | |||| ||||||||
Sbjct 708 TAGATTGTATGCTCAGATCAGAAAAGTTTCAGCTCCTTGTTTTGAG-CTTAGGATTACAT 766
Query 464 ATCTAGAGCCAGATTCAAATGATGAGAAAGAGCTCCAATGGTTTGAAAAAGACTTGCCTG 523
|||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 767 ATCTAGAGCCAGATCCAAATGGTGAGAAAGAGCTCCAATGGTTTGAAGAAGACTTGCCTG 826
Query 524 TTTCTGTTGGTAACTTCAGGCTTGGGGAAAATAAGAGCACAAAAGATCGTTCAATATTTT 583
|||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 827 TTTCTGTTGGTATGTTCAGGCTTGGGGAAAATAAGAGCACACAAGATCGTTTAATATTTT 886
Query 584 CACATGTTATTCATTGCAATGAACGGAGC-A-ACGCTAGTTGTTTCAGCATCACTTGTCG 641
||||||||||||||||||||||||| ||| | || ||| ||||||||| ||||||||||
Sbjct 887 CACATGTTATTCATTGCAATGAACGAAGCAATACTCTA--TGTTTCAGCGTCACTTGTCG 944
Query 642 TTTCATCAGTACTTATCATTTTAGTGTATCCCCTA-GAAATGGAGAGACTTGGGCGCTTT 700
|||||||| |||| ||||||||||||||| |||| |||| || ||||| ||||||||||
Sbjct 945 TTTCATCAAAACTTGTCATTTTAGTGTATCTCCTAGGAAA-GGCGAGACATGGGCGCTTT 1003
Query 701 TCAAGAACTGGGATATTAAGTGGTCTTTAAAACCAGATTCTCACCGCAAATATGAGTATG 760
||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 1004 TCAAGAACTGGGATATTAAGTGGTCTTCAGAGCCAGATTCTCACCGCAAATATGAGTATG 1063
Query 761 AATTTGTCAAGATTCTGTCAGATTACGCTGATGAAACTGGTGTATATGTTGCATACTTGC 820
|||||||| |||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 1064 AATTTGTCGAGATTCTGTCAGATTATTCTGATGAAGGTGGTGCATATGTTGCATACTTGC 1123
Query 821 ATAAAGCAAAAGGATTTGCTAGTGTGTTCTTTCGAATGGGAAGAGGTTATGAAGGTATAT 880
||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 1124 ATAAAGCAAAAGGGTTTGCTAGTGTGTTCTTCCGAATGGGAACTGGTTATGAAGGCATAT 1183
Query 881 TTCGTATTTTACCTCAGAGTTTGTATCGGTTCTCCCATAGGATTCCTTCCTT-----TGA 935
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1184 TTCGTATTTTACCTCAGAGTTTGTATCGGTTCTCCCATAGGGTTCCTTCCTTCAAACTGA 1243
Query 936 CTGGAATTGAAGGAAAAGGTGTGCCAAAAGATGCTTACGAGCTGGACAAAGCTGCGTTAC 995
||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1244 CTGAAATTGAAGGAAAAGGTATGCCAAAAGATGCTTACGAGCTGGACAAAGCTGCATTAC 1303
Query 996 CAGAAACAATCGAAGAGTTCATCGTGCCTTTAGACTCTGAGA 1037
|||||||||| |||||| |||||||||||| | |||||||||
Sbjct 1304 CAGAAACAATTGAAGAGATCATCGTGCCTTCAAACTCTGAGA 1345
Score = 113 bits (61), Expect = 4e-24
Identities = 105/125 (84%), Gaps = 8/125 (6%)
Strand=Plus/Plus
Query 1627 ACCAACATATACGATCCCGAAAAG--GGAAAGGATCAGATTCTCGAATAAGGTTCCTGCT 1684
||||| || ||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1749 ACCAATATTTACGATCCC--AAAGTCGGAAAGGATCAGATTCTCGAATAAGGTTCCTGCT 1806
Query 1685 TCACGTGTAACCATAGAGATG-TACGGAGAGCTAGTGGA-TCTTATAAGTGTTGATTCTA 1742
|| |||||||||| ||||||| | |||||| || || | || |||||||||||| ||
Sbjct 1807 TCGCGTGTAACCAAAGAGATGCTT-GGAGAGTTAAAAGAGTTTT-TAAGTGTTGATTATA 1864
Query 1743 GAGCA 1747
| |||
Sbjct 1865 GGGCA 1869
Score = 76.8 bits (41), Expect = 5e-13
Identities = 48/51 (94%), Gaps = 2/51 (4%)
Strand=Plus/Plus
Query 1354 TCCTCAAACCT-CTATTGATGGCATTGAATATACCATTCTCCCCAAGATTG 1403
||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 1548 TCCTCAAACCTCCT-TGGATGGCATTGAATATACCATTCTCCCCAAGATTG 1597
> Ahg941405 jgi|Araly1|941405|scaffold_601949.1
Length=1763
Score = 822 bits (445), Expect = 0.0
Identities = 622/707 (88%), Gaps = 13/707 (2%)
Strand=Plus/Plus
Query 603 TGAACGGAGCAACGCTAGTTGTTTCAGCATCACTTGTCGTTTCATCAGTACTTATCATTT 662
|||||| |||||| || |||||||||||||||||||||||||||||| |||| ||||||
Sbjct 618 TGAACGAAGCAACACTCGTTGTTTCAGCATCACTTGTCGTTTCATCAACACTTGTCATTT 677
Query 663 TAGTGTATCCCCTAGA-AATGGAGAGACTTGGGCGCTTTTCAAGAACTGGGATATTAAGT 721
|||||| ||||||||| || || ||||| ||||||||||||||||| |||||||||||||
Sbjct 678 TAGTGTTTCCCCTAGACAA-GGCGAGACATGGGCGCTTTTCAAGAATTGGGATATTAAGT 736
Query 722 GGTCTTTAAAACCAGATTCTCACCGCAAATATGAGTATGAATTTGTCAAGATTCTGTCAG 781
|||||| | | ||||||||||||||||||| |||||| ||| ||||| ||||||||||||
Sbjct 737 GGTCTTCAGAGCCAGATTCTCACCGCAAATTTGAGTACGAAATTGTCGAGATTCTGTCAG 796
Query 782 ATTACGCTGATGAAACTGGTGTATATGTTGCATACTTGCATAAAGCAAAAGGATTTGCTA 841
||||| |||||||| |||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 797 ATTACTCTGATGAAGGTGGTGTATATGTTGCATACTTGCACAAAGCAAAAGGGTTTGCTA 856
Query 842 GTGTGTTCTTTCGAATGGGAAGAGGTTATGAAGGTATATTTCGTATTTTACCTCAGAGTT 901
|||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 857 GTGTGTTCTTCCGAATGGGAACCTTTTATGAAGGTATATTTCGTATTTTACCTCACAGTT 916
Query 902 TGTATCGGTTCTCCCATAGGATTCCTTCCTT-----TGACTGGAATTGAAGGAAAAGGTG 956
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 917 TGTATCGGTTCTCCCATAGGGTTCCTTCCTTCAAACTGACTGGAATTGAAGGAAAAGGTG 976
Query 957 TGCCAAAAGATGCTTACGAGCTGGACAAAGCTGCGTTACCAGAAACAATCGAAGAG-TTC 1015
||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 977 TGCCAAAGGATGCTTATGAGCTGGATGAAGCTGCGTTACCAGAAACAATCGAAGAGATTG 1036
Query 1016 ATCGTGCCTTTAGACTCTGAGAGTAATATAAAGTCTAAACGCCAAGATATATACTTTGCT 1075
| ||||||| | ||||||||||||| | ||||||||||| ||||| || |||||||||
Sbjct 1037 TT-GTGCCTTCAAACTCTGAGAGTAAAAAAAAGTCTAAACACCAAGCCATCTACTTTGCT 1095
Query 1076 AGCAAGGGTAATGTTTTTCTGACTGGCCAGATTTGGTCATTTTACTGTGGTGATGATTCT 1135
|| |||| || || |||| ||||||||||| |||||||||||| ||||| ||||| |
Sbjct 1096 AGTGAGGGAAAGGTCTTTCAAACTGGCCAGATCTGGTCATTTTACAGTGGTTATGATGAT 1155
Query 1136 TTGCCTCTGTACTACGGTAGGATTCAGAAGATCACTTTTACCCAGGCATTTATGCAGGAT 1195
||||||||||| || |||||||||||||||||||||| ||| |||||||||| |||||||
Sbjct 1156 TTGCCTCTGTATTATGGTAGGATTCAGAAGATCACTTATACTCAGGCATTTAAGCAGGAT 1215
Query 1196 CCTGTA-TGTAAATTACATATAGGTCGGCTAAAGGCTACTCGTTTCCCTGCGGATGTTAT 1254
|| ||| | |||| |||| ||| || |||||||||||||||||||||||| ||||||||
Sbjct 1216 CCGGTAAT-TAAACTACACATAAGTAGGCTAAAGGCTACTCGTTTCCCTGAAGATGTTAT 1274
Query 1255 CGACTGGGAAA-ACAAGGGAACGCCTGTTGGTTGTGGAACTTTCTAC 1300
| ||||| ||| || ||||| ||||||| |||||||||||||||||
Sbjct 1275 CAACTGG-AAATACGGGGGAATGCCTGTTAGTTGTGGAACTTTCTAC 1320
Score = 291 bits (157), Expect = 2e-77
Identities = 228/262 (87%), Gaps = 5/262 (2%)
Strand=Plus/Plus
Query 282 ACAAGCAAACATTTCTGAATGTGTTGTTGGTCCAAAGTTTAACGACTTTAG-TAAGCTGA 340
|||| |||| ||||||||| | |||||||||||||| ||||||||| | |||||||
Sbjct 360 ACAACCAAAGATTTCTGAA--T-CCGTTGGTCCAAAGTTCAACGACTTT-GAAAAGCTGA 415
Query 341 GGGAAGAAGCAAACTTTAAAGTTGGTCAGACCTGGGCGCTTTATGATACAATGGATGGGA 400
||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 416 GGGAAGAAGTAAACTTTGCGGTTGGTCAGACCTGGGCTATTTATGATACAGTGGATGGGA 475
Query 401 TGCCTAGATTGTATGCTCAGATCAGGAAAGTTTCAGCTCCTTGTTTTGGTCTTATGATTA 460
|||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| |
Sbjct 476 TGCCTAGATTGTATGCTCGGATCATAAAAGTTTCAGCTCCTTGTTTTGGTCTTAGGATCA 535
Query 461 CATATCTAGAGCCAGATTCAAATGATGAGAAAGAGCTCCAATGGTTTGAAAAAGACTTGC 520
||||||||||||||||| || | |||| |||||| | |||||||||| |||||||||
Sbjct 536 CATATCTAGAGCCAGATCCAGGTAATGAAAAAGAGAAACTATGGTTTGAAGAAGACTTGC 595
Query 521 CTGTTTCTGTTGGTAACTTCAG 542
|||||||||||||||| |||||
Sbjct 596 CTGTTTCTGTTGGTAAGTTCAG 617
Score = 244 bits (132), Expect = 1e-63
Identities = 331/420 (79%), Gaps = 42/420 (10%)
Strand=Plus/Plus
Query 1346 CAGATAACT-CCTCAAACCTCTATTGATGGCATTGAATATACCATTCTCCCCAAGATTGG 1404
||||||| | ||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 1321 CAGATAA-TGCCTCAAACCTCCATGGATGGCATTGAATATACCATTCTCCCCAAAATTGG 1379
Query 1405 CGAAGTTTGGGTGATATACAAATACTGGAGTCGTGACATGGATGCAGA-GGACTTT-AGT 1462
|||||||||| |||||||| ||||||||||| | |||| |||| || || ||| | |
Sbjct 1380 TGAAGTTTGGGCGATATACAGATACTGGAGTCATTACATTGATGTGGATGG-CTTGGAAT 1438
Query 1463 TTTG-CTTCTTATAACATTGTTGAAATTCTTGATGACAC-CTTGGAGTATAAGGTCCAAT 1520
| | ||| | || ||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 1439 TCGGTCTT-T-ATGACATTGTTGAAATTCTTGATGACACTCT-GGATTATAAGGTCCAAC 1495
Query 1521 TGCTGAAGCA-CGACCCCTTTTATAAAGATCATAAA-A-A-GGAGA-ATACGTTGTTAAG 1575
|||||||||| | |||| ||| | | |||| ||| | | ||| | ||| |||||| ||
Sbjct 1496 TGCTGAAGCAACAACCCGTTTC-TGATGATCGTAATGATATGGA-ACATAGGTTGTTTAG 1553
Query 1576 GGCA-GTTAAGAAG-A-A-TGAGAGCTG-GGAAATGGAAGGGTCGGGATCGTATATACCA 1630
|||| || | | || | | | | | | | ||| || ||||||||| | | |||
Sbjct 1554 GGCATGT-ACGGAGTATACTTATAAC-GAGGA--TG-AAGGGTCGG-A----A----CCA 1599
Query 1631 ACATATACGATCCCGAAAAG--GGAAAGGATCAGATTCTCGAATAAGGTTCCTGCTTCAC 1688
| || ||||||||| ||| | ||||||||||||||||||||||||| |||||||| | |
Sbjct 1600 ATATTTACGATCCC-AAA-GTCGGAAAGGATCAGATTCTCGAATAAGATTCCTGCTACGC 1657
Query 1689 GTGTAACCATAGAGATGTACGGAGAGCTAGTGGATCTTATAAGTGTTGA-TTCTAGAGCA 1747
||||||| | |||||||| ||||||| | | || ||| |||||||||| || ||| |||
Sbjct 1658 GTGTAACGAAAGAGATGTCCGGAGAGTTGGAAGACCTTTTAAGTGTTGAGTT-TAGGGCA 1716
> Ahg941399 jgi|Araly1|941399|scaffold_601943.1
Length=3269
Score = 566 bits (306), Expect = 2e-160
Identities = 689/868 (79%), Gaps = 49/868 (6%)
Strand=Plus/Plus
Query 672 CCCTAGAAATGGAGAGACTTGGGCGCTT-TTCAAGAACTGGGATATTAAGTGGTCTTTAA 730
||| ||||| || ||||||||||| || |||||||||||||||||||| ||||||| |
Sbjct 2145 CCCAAGAAAAGGCGAGACTTGGGC-ATTGTTCAAGAACTGGGATATTAACTGGTCTTCAG 2203
Query 731 AACCAGATTCTCACCGCAAATATGAGTATGAATTTGTC-AAGATTCTGTCAGATTACGCT 789
| ||||||||||||||||||| |||||||||||||||| || ||| ||||||||||||||
Sbjct 2204 AGCCAGATTCTCACCGCAAATCTGAGTATGAATTTGTCGAA-ATTTTGTCAGATTACGCT 2262
Query 790 GATGAAACTGGTGTATATGTTGCATACTTGCATAAAGCAAAAGGATTTGCTAGTGTGTTC 849
|||| | ||||||||| |||||| | |||||||||||||||||| ||||| |||||||||
Sbjct 2263 GATGGAGCTGGTGTATCTGTTGCGTTCTTGCATAAAGCAAAAGGCTTTGCAAGTGTGTTC 2322
Query 850 TTTCGAATGGGAA-GAGGTTATGAAGGTATATTTC-GTATTTTACCTCAGAGTTTGTATC 907
|||||| |||||| | || ||| || |||| | | ||| ||||||| ||||| ||||
Sbjct 2323 TTTCGATTGGGAACTA-GTAATGCAGACATATCGCAG-ATTCTACCTCACAGTTTATATC 2380
Query 908 GGTTCTCCCATAGGATTCCTTCCTT-----TGACTGGAATTGAAGGAAAAGGTGTGCCAA 962
||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 2381 GGTTCTCCCATAGGATTCCTTCCTTCAACCTGACTGGAATTGCAGGAAAAGGTATGCCAA 2440
Query 963 AAGATGCTTACGAGCTGGACAAAGCTGCG-TTACCAGAAACAATCGAAGAGTTCATCGTG 1021
|||||||||||||||||||| ||||| | ||||| ||||||||||| ||| | || ||
Sbjct 2441 AAGATGCTTACGAGCTGGACCAAGCT-CTATTACCTGAAACAATCGATGAGATAATTGTC 2499
Query 1022 CCTTTAGACTCTGAGAGTAATATAAAGTCTAAACGCC-AAGATATATACTTTGCTAGCAA 1080
||| | | ||| | || | | | |||||| | ||| | | |||||| || | |
Sbjct 2500 CCTCCACA-TCT-AT--TAGCAGA--GCCTAAAC-CAGAAGCTCTCTACTTTCCTCGTGA 2552
Query 1081 GGGTAATGTTTTTCTGACTGGCCAGATTTGGTCATTTTACTGTGGTGATGATT--CTTTG 1138
|| || ||||| | ||||||||||| ||||||||||||| |||| | | || ||| |
Sbjct 2553 TGGAAAGGTTTTCCAAACTGGCCAGATCTGGTCATTTTACTATGGTAACG-TTAACTT-G 2610
Query 1139 CCTCTGTACTACGGTAGGATTCAGAAG-ATCACTTTTACCCAGGCATTT-ATGCAGGATC 1196
||||| |||||| ||||||| || ||| |||||||| || |||||||| | ||||||
Sbjct 2611 CCTCTATACTACTGTAGGATACA-AAGGATCACTTTAACTCAGGCATTCGA-GCAGGAAG 2668
Query 1197 CTGTATGTAAATTA-CATATAGGTCGGCTAAAGGCTACTCGTTTCCCTGCGGATGTTAT- 1254
| | || |||| || | | || ||||| ||||| ||| || |||||||| | |||| ||
Sbjct 2669 CAGAATTTAAACTATC-TGTAAGTCGGTTAAAGACTAATCCTTTCCCTGAGAATGTCATT 2727
Query 1255 CGACTGGGAAAACAAGGGAACGCCTGTTGGTTGTGGAACTTTCTACGCA-AGAAAA-GCT 1312
| | ||||| ||||| ||| ||||||||| ||||||||||||| || || ||| | |
Sbjct 2728 C-AGTGGGAGGACAAGAGAATGCCTGTTGGCTGTGGAACTTTCT-CGGTGAGGAAATGTT 2785
Query 1313 CTAGAAATAATCACCCCA-AGTGAGGTTTCACTTCAGATAAC-TCCTCAAACCTCTATTG 1370
| ||| || |||| ||| | ||| |||| || ||||||| || ||||||||| || |
Sbjct 2786 -TCGAAGTACTCACTCCAGA-TGATGTTTTACATCAGATAGTGTC-TCAAACCTCCATGG 2842
Query 1371 ATGGCATTGAATATACCATTCTCCCCAAGATTGGCGAAGTTTGGGTGATATACAAATACT 1430
|||| | ||| ||||||||||| ||||||||||| || ||||||| ||||||| || ||
Sbjct 2843 ATGGAAATGATTATACCATTCTTCCCAAGATTGGGGATGTTTGGGCCATATACAGATTCT 2902
Query 1431 GGAGTCGTGACATGGA-TGCAGAGGACTTTAGTTT-TGCTTCTTATAACATTGTTGAAAT 1488
||| | || ||| ||| | || ||||| || ||| ||| || || ||||||| ||| |
Sbjct 2903 GGACTTGTCACAAGGAGTTCA-AGGACATTGGTTCCTGCAGCT-ATGACATTGTCGAAGT 2960
Query 1489 TCTTGATGACACCT-TGGAGTATAAGGT 1515
|||||||||||| | |||| ||||||||
Sbjct 2961 TCTTGATGACAC-TGTGGACTATAAGGT 2987
Score = 285 bits (154), Expect = 8e-76
Identities = 242/283 (86%), Gaps = 11/283 (4%)
Strand=Plus/Plus
Query 310 GGTCCAAAGTTTAACGACTTTAG-TAAGCTGAGGGAAGAAGCAAACTTTAAAGTTGGTCA 368
|||| |||| | || |||||| | ||| ||||||||||||| ||| ||| |||||| ||
Sbjct 1825 GGTCTAAAGATCAATGACTTT-GATAAACTGAGGGAAGAAGTAAAATTTGCAGTTGGCCA 1883
Query 369 GACCTGGGCGCTTTATGATACAATGGATGGGATGCCTAGATTGTATGCTCAGATCAGGAA 428
| ||||||| ||||||||||| | |||||||||||| |||||||||||| |||||| ||
Sbjct 1884 GGCCTGGGCTCTTTATGATAC-A--GATGGGATGCCTCGATTGTATGCTCTGATCAGAAA 1940
Query 429 AGTTTCAGCTCCTTGTTTT-GGTCTTATGATTACATATCTAGAGCCAGATT-CAAATGAT 486
||||||| ||||||||||| || |||| ||| |||||||||||||||| || || | |
Sbjct 1941 AGTTTCATCTCCTTGTTTTCGG-CTTAGGATCACATATCTAGAGCCAG-TTCCAGGTAAC 1998
Query 487 GAGAAAGAGCTCCAATGGTTTGAA-AAAGACTTGCCTGTTTCTGTTGGTAACTTCAGGCT 545
||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1999 GAGAAAGAGATCCAATGGTTTGAAGAAA-ACTTGCCTGTTTCTGTTGGTAACTTCAGGCT 2057
Query 546 TGGGGAAAATAAGAGCACAAAAGATCGTTCAATATTTTCACAT 588
|||| ||||| || ||||||||||||||| ||||| || |||
Sbjct 2058 TGGGAAAAATCTGAACACAAAAGATCGTTCCATATTCTCTCAT 2100
> Ahg941401 jgi|Araly1|941401|scaffold_601945.1
Length=1768
Score = 429 bits (232), Expect = 3e-119
Identities = 412/497 (83%), Gaps = 19/497 (4%)
Strand=Plus/Plus
Query 143 CTTGTGCTGAGAGTGTTGGTAAGAAGAGAAAGAGGAACGAGTATGAT-GATAGTTGCATT 201
||||||||| || ||||||| |||||||||||| |||||| |||| | || ||| | | |
Sbjct 118 CTTGTGCTGTGATTGTTGGTGAGAAGAGAAAGATGAACGAATATGGTGGA-AGTAGTAAT 176
Query 202 GCTAGATATATCGGTGCTGTA-AGTAACAATAGAAGAGGGTCTAGTGACAATGGAGATGC 260
|| || || ||||| |||| | || ||||||||||||||| | ||| |||||||| |
Sbjct 177 ACTGGAAATCGCGGTGTTGTACA-TACCAATAGAAGAGGGTCAAATGATGATGGAGATAC 235
Query 261 ATGCATA--GGAGAAGAGTCGG--C----ACAAGCAAACATTTCTGAATGTGTTGTTGGT 312
| | | | ||||||||||||| | |||| |||| ||||||||| | ||||||||
Sbjct 236 A-G-AAAGGGGAGAAGAGTCGGTACAAATACAACCAAAGATTTCTGAA--T-TTGTTGGT 290
Query 313 CCAAAGTTTAACGACTTTAGTAAGCTGAGGGAAGAAGCAAACTTTAAAGTTGGTCAGACC 372
|| |||||||| |||||| |||| ||||||||||||| |||||| ||||| ||||||
Sbjct 291 CCCAAGTTTAATGACTTTGGTAATCTGAGGGAAGAAGTTAACTTTGCGGTTGGCCAGACC 350
Query 373 TGGGCGCTTTATGATACAATGGATGGGATGCCTAGATTGTATGCTCAGATCAGGAAAGTT 432
||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 351 TGGGCTCTTTATGATACAACAGATGGGATGCCTAGATTGTATGCTCAGATCAGAAAAGTT 410
Query 433 TCAGCTCCTTGTTTTGGTCTTATGATTACATATCTAGAGCCAGATTCAAATGATGAGAAA 492
|||||||||| ||| || |||| ||| |||||||||||||||||| | |||||||||||
Sbjct 411 TCAGCTCCTTCTTTCGGGCTTAGGATCACATATCTAGAGCCAGATCCTGATGATGAGAAA 470
Query 493 GAGCTCCAATGGTTTGAAAAAGACTTGCCTGTTTCTGTTGGTAACTTCAGGCTTGGGGAA 552
|||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||
Sbjct 471 GAGCTCCAGTGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTAAGTTCAGGCTTGGCCAA 530
Query 553 AATAAGAGCACAAAAGATCGTTCAATATTTTCACATGTTATTCATTGCAATGAACGGA-G 611
| | ||| ||| ||||||||||| | ||| || ||| |||| || ||||||||| ||| |
Sbjct 531 AGTCAGAACACGAAAGATCGTTCCAGATTCTCTCATCTTATCCAATGCAATGAA-GGAAG 589
Query 612 CAACGCTAGTTGTTTCA 628
|||| | ||| || |||
Sbjct 590 CAACACAAGTCGTCTCA 606
> Ahg488759 jgi|Araly1|488759|fgenesh2_kg.6__1893__AT5G18710.1
Length=1701
Score = 174 bits (94), Expect = 2e-42
Identities = 183/224 (82%), Gaps = 13/224 (6%)
Strand=Plus/Plus
Query 319 TTT-AACGACTTTAG-TAAGCTGAGGGAAG-AAGCAAACTTTAAAGTTGGTCAGACCTGG 375
||| || |||||| | |||||||||| ||| |||| || ||| |||||| ||||| |||
Sbjct 378 TTTCAATGACTTT-GATAAGCTGAGGAAAGTAAGC-AATTTTGCAGTTGGCCAGACTTGG 435
Query 376 GCGCTTTATGATACAATGGATGGGATGCCTAGATTGTATGCTCAGATCAGGAA-AGTTTC 434
|| |||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 436 GCTCTTTATGATACAGTGGATGGGATGCCTAGATTGTATGCTCAGATCAG-AACAGTTTC 494
Query 435 AGCTCCTTGTTTTGGTCTTA-TGATTACATATCTAGAGCCAGATTCAAATGATGAGAAAG 493
|||| || | |||| | ||| || | |||| || ||||| ||| || |||| ||| ||
Sbjct 495 AGCTTCTGGGTTTGATGTTAGTG-TCACATGGCTTGAGCCTGATCCATATGACGAGGAAC 553
Query 494 -AGCTCCA-ATGGTTTGAAAAAGACTTGCCTGTTTCTGTTGGTA 535
| | || | | | |||||||||||||||||||||||||||||
Sbjct 554 CAA-TACAGAAG-TATGAAAAAGACTTGCCTGTTTCTGTTGGTA 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69019523940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5