BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18748.1 Length=210 Score E Sequences producing significant alignments: (Bits) Value Ahg488761 jgi|Araly1|488761|fgenesh2_kg.6__1895__AT5G18748.1 267 3e-71 > Ahg488761 jgi|Araly1|488761|fgenesh2_kg.6__1895__AT5G18748.1 Length=201 Score = 267 bits (144), Expect = 3e-71 Identities = 178/193 (92%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 22 agagacagagagagcgtcggaaactcaccggagttcg-gag--a-a-acagagagaggaa 76 ||||| ||||||||||||||||||||||||||||| | ||| | | | ||||||||||| Sbjct 8 AGAGAGAGAGAGAGCGTCGGAAACTCACCGGAGTT-GAGAGAAAGAGAGAGAGAGAGGAA 66 Query 77 acggaggagaTAGGGT-ACCGTCAAAGCTCACGTCGATGCCCAACTGCCTCTTTGACTGG 135 | |||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||| Sbjct 67 AAGGAGGAGATA-GGTCACCGTCAAAGCTCACGTCGAGGCCTAACTGCCTCTTTGACTGG 125 Query 136 AATCTGTCTTCGTCTTCGTTTCTGGGGAGACACCTCACGGTTTATATGGTTCTCTGGTTT 195 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 126 AATCTGTCTTCGTCTTCGTTTGTGGGGAAACACCTCACGGTTTATATGGTTCTCTGGTTT 185 Query 196 TACTGTAATTTTT 208 ||||||||||||| Sbjct 186 TACTGTAATTTTT 198 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 7141204807 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5