BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G18748.1

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488761 jgi|Araly1|488761|fgenesh2_kg.6__1895__AT5G18748.1         267    3e-71


> Ahg488761 jgi|Araly1|488761|fgenesh2_kg.6__1895__AT5G18748.1
Length=201

 Score =  267 bits (144),  Expect = 3e-71
 Identities = 178/193 (92%), Gaps = 8/193 (4%)
 Strand=Plus/Plus

Query  22   agagacagagagagcgtcggaaactcaccggagttcg-gag--a-a-acagagagaggaa  76
            ||||| ||||||||||||||||||||||||||||| | |||  | | | |||||||||||
Sbjct  8    AGAGAGAGAGAGAGCGTCGGAAACTCACCGGAGTT-GAGAGAAAGAGAGAGAGAGAGGAA  66

Query  77   acggaggagaTAGGGT-ACCGTCAAAGCTCACGTCGATGCCCAACTGCCTCTTTGACTGG  135
            | |||||||||| ||| |||||||||||||||||||| ||| ||||||||||||||||||
Sbjct  67   AAGGAGGAGATA-GGTCACCGTCAAAGCTCACGTCGAGGCCTAACTGCCTCTTTGACTGG  125

Query  136  AATCTGTCTTCGTCTTCGTTTCTGGGGAGACACCTCACGGTTTATATGGTTCTCTGGTTT  195
            ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct  126  AATCTGTCTTCGTCTTCGTTTGTGGGGAAACACCTCACGGTTTATATGGTTCTCTGGTTT  185

Query  196  TACTGTAATTTTT  208
            |||||||||||||
Sbjct  186  TACTGTAATTTTT  198



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7141204807


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5