BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18750.1
Length=2904
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941407 jgi|Araly1|941407|scaffold_601951.1 2444 0.0
Ahg488761 jgi|Araly1|488761|fgenesh2_kg.6__1895__AT5G18748.1 130 6e-29
> Ahg941407 jgi|Araly1|941407|scaffold_601951.1
Length=2755
Score = 2444 bits (1323), Expect = 0.0
Identities = 1468/1539 (95%), Gaps = 6/1539 (0%)
Strand=Plus/Plus
Query 1287 GTAAAGCAGCAAAAAATTCAAGTTCAGGGAGTGCGTCAGATGCAGAAATTCAGTGTACTG 1346
|||| |||||||| ||||||||||||||||||| |||||||| |||||| |||||||||
Sbjct 1219 GTAATGCAGCAAAGGATTCAAGTTCAGGGAGTGCATCAGATGCCGAAATTGAGTGTACTG 1278
Query 1347 ATCCTGATTTCAGTAACTTTGAGAAGTCGAGGGAAGTGACCTGTTTCAAAGCTGGTCAGA 1406
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1279 ATCCTGATTTCAGTAACTTTGAGAAGTCGAGGGAAGTGACGTGTTTCAAAGCTGGTCAGA 1338
Query 1407 CATGGGCAATCTATGATGACATGGGTGGAATGCCTCGATACTATGCCATCATCAGAAAAG 1466
|||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1339 CATGGGCAATGTATGATGACATGGGTCGAATGCCTCGATACTATGCCCTCATCAGAAAAG 1398
Query 1467 TCATAAGGAAACCTAGTTTCATGCTCAAAATACAATGGCTAGAGGCTGA-ACCAGATGAT 1525
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1399 TCATAAGGAAACCTAGTTTCATGCTCAAAATACAATGGCTAGAGGCT-AGACCAGATGAT 1457
Query 1526 GAGAAAGCAA-ACCTGTGGGTTCGTAAAAACTTGCCCATCTCTATTGGCAAGTTCAAACT 1584
|||||||||| | | ||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1458 GAGAAAGCAATA-CAGTGGGTTCGTAAAAAATTGCCCATCTCTATTGGTAAGTTCAAACT 1516
Query 1585 TGGTGGAAATGAGAACATAGAGAAAACTCCATGTTTCTCTCATATGATCTACTTTAAG-G 1643
|||||||||| ||||||||||||||||||||||||||||||| ||||||||| | || |
Sbjct 1517 TGGTGGAAATTTGAACATAGAGAAAACTCCATGTTTCTCTCATCTGATCTACTCT-AGAG 1575
Query 1644 TAGGAAGCATGAAGGATACTGTCAGAGTATACCCAAGAATAGGAGAAACATGGGCTCTCT 1703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 TAGGAAGCATGAAGGATACTGTCAGAGTATACCCAAGAATAGGAGAAACATGGGCTCTCT 1635
Query 1704 TCAAGAACTGGGACATCAATTGGTCCTCTGGTCGTCGGCGTTCTTCCCATGAGCATGAGT 1763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 TCAAGAACTGGGACATCAATTGGTCCTCTGGTCGTCGGCGTTCTTCCCATGAGCATGAGT 1695
Query 1764 ATGAGTATGAATTTGTTGAGATCCTGTCAGAATATGTTGAAGGGGTTGCAATACAGGTTG 1823
|||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1696 ATGAGTATGAGTTTGTTGAGATCTTGTCAGAATATGTTGAAGGGGTTGCAATAGAGGTTG 1755
Query 1824 CGTTCTTGCGTAAAATAAAAGGCTTTACAAGTGTATTCTGTCGAATTGCACCAGGTGGTG 1883
|||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1756 CGTTCTTGCGTAAACTAAAAGGCTTTGCAAGTGTATTTTGTCGAATTGCACCAGGTGGTG 1815
Query 1884 GATCAGACACAATTCAGATTCCGCCTCATGAGTTGCTTAGATTCTCCCACAGCATCCCCT 1943
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1816 GATTAGACACAATTCAGATTCCGCCTCATGAGTTGCTTAGATTCTCCCATAGCATCCCCT 1875
Query 1944 CAACCAAATTGACAGGAAAAGAAGGAAATGGCGTTCCCATTGGTTCTTATGAGTTCGATA 2003
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1876 CAACCAAATTGACAGGAGAAGAAGGAAATGGCGTTCCCATTGGTTCTTATGAGCTCGATA 1935
Query 2004 CAGCTGCATTACCACAGAAAATTGAACAAGAAGAAGCTGTCCCTGTCTTACGAGAATCTG 2063
|||||||||||||||| || |||||| |||||||||| || ||||| ||||||||| |||
Sbjct 1936 CAGCTGCATTACCACATAAGATTGAAGAAGAAGAAGCCGTTCCTGTATTACGAGAAGCTG 1995
Query 2064 CCAAGTTAAACCAAGTCAATCATAACTCTCCACCTTCATCGGAGCCAGACTGTATCGTCA 2123
||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1996 CCAAGTTGAACCAAGTCCATCATCACTCTCCACCTTCATCGGAGCCAGACTGTATTGTCA 2055
Query 2124 TTCCTAATTTCCAGTTCAACAACTTCAGCGCTGAAAGATTGGAGGGAAAGTTTGCACCTG 2183
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2056 TTCCTAATTTCCAGTTTAACAACTTCAGTGCTGAAAGATTAGAGGGAAAGTTTGCACCTG 2115
Query 2184 GTCAGATATGGTCATTGAACAGCAAAGAGGATGGCTTGCCCAAGTGTTACGCAAAGATTC 2243
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2116 GTCAGATATGGTCATTGAACAGCAAAGAGGATGGCTTGCCCAAGTGTTACGCTAAGATTC 2175
Query 2244 AGCAGATAGTATGGAGGCCGGTATTCAAGTTGCAGATAAACCGGCTAGAGCCAAAATCAT 2303
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 2176 AGCAGATAGTATGGAGGCCGGTATTCAAATTGCAGATAAACCGGCTAGAGCCTAAATCAT 2235
Query 2304 TGCTTGAGAACGTTATACAGTGGCATGACAAAAGAATGCCAGTCAGTTGCGGAAATTTCA 2363
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2236 TTCTTGAGAACGTTATACAGTGGCATGACAAAAGAATGCCAGTCAGTTGCGGAAATTTCA 2295
Query 2364 CTTTGAAGGAAGGCCGGGACGAGACACTCACTAAAGTGACTGATTTTTCACATCAGATTA 2423
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2296 CTTTGAAGGAAAGCCGGGACGAGACACTCACTAACGTGACTGATTTTTCACATCAGATTA 2355
Query 2424 AGGCAGAAAAGCATTTCAGGATAAACGAGTACATTGTTGTCCCCAAGACTGGCGAAATTT 2483
|||||||||| |||||||||| ||||||||||||||| ||||||||||| || |||||||
Sbjct 2356 AGGCAGAAAATCATTTCAGGAAAAACGAGTACATTGTCGTCCCCAAGACCGGTGAAATTT 2415
Query 2484 GGGCAATGTACAAGAACTGGAGTGAAACAATCAAGGCCACAAGCTTGAAGAGGTGTGAAT 2543
||||| |||||||||||||||||||||||||||||||| |||||||||| | ||||||||
Sbjct 2416 GGGCATTGTACAAGAACTGGAGTGAAACAATCAAGGCCGCAAGCTTGAAAAAGTGTGAAT 2475
Query 2544 ATGAGGTTGTTGAGGTTCTTGATGACAATGACAGTCACATCGAGGTTATGCTGTTGGAAC 2603
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2476 ATGAGGTTGTTGAAGTTCTTGATGACAATGACAGCCACATCGAGGTTATGCTGTTGGAAC 2535
Query 2604 AGGTTGATGGGTTTATTTCAGTATTCAAGGAAAAATTGGAAGGAGGCATCGATGTGAAGA 2663
||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 2536 GGGTGGATGGGTTTATTTCGGTATTCAAGGAAAAAGTGGAAGGAGGCATCGATGTGAAGA 2595
Query 2664 AGAAGATCCCAAGGTGTGAATTGTTGAGATTCTCACATTATGTTCCTGCATTCCGCTTAA 2723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2596 AGAAGATCCCAAGGTGTGAATTGTTGAGATTCTCACATTATGTTCCTGCATTCCGCTTAA 2655
Query 2724 CTGGAGAGAGAGATGGAGCTCTTAGAGGCTATGTTGAGCTCGATCCAAGTGCGTTTCCCC 2783
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2656 CTGGAGAGAGAGATGGAGCTCTTAGAGGCTATGTTGAGCTCGATCCAAGTGCGTTGCCCC 2715
Query 2784 TTAACTTGCGCAGGTCTTAGACTAATTCTTGTAGGGAGG 2822
|||||||||||| |||||||||||||||||||||||||
Sbjct 2716 GTAACTTGCGCAGATCTTAGACTAATTCTTGTAGGGAGG 2754
Score = 1559 bits (844), Expect = 0.0
Identities = 1080/1189 (91%), Gaps = 35/1189 (3%)
Strand=Plus/Plus
Query 129 ATCTGGGATATTTTTA-AAGTATGAGCAACAAAGATGAGGCTCTACGAGCCAAAGATTTA 187
|||||||| | ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATCTGGGAGA-TTTTATTAGTATGAGCAACAAAGATGAGGCTCTACGAGCCAAAGAGTTA 59
Query 188 GCAGAAGATTGGATGAGCAAGTCAGATTTCACAACTGCTCGTAGAATTGCGATAAAGGCT 247
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 GCAGAAGATTGGATGAGCAAGTCAGATTTCACAACTGCTCGTAGAATTGCTTTAAAGGCT 119
Query 248 CAGAAAATGGATGCAACTCTGGAGAGTGTTGTTGCTCGCATGATTATGGTGTGTGATGTG 307
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 120 CAGAAAATGGATGCAAGTCTGGAGAATGCTGTTGCTCGCATGATTATGGTGTGTGATGTG 179
Query 308 CATTGTGCAGCATTGGAGAAATCTGGTGATGAGACTGATTGGTACAAGATTCTTCAAGTG 367
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 180 CATTGTGCAGCATTGGAGAAATCTGGGGATGAGACTGATTGGTACAAGATTCTCCAAGTA 239
Query 368 GAGCAAACTGCAGATGAAAATACCATTAAGAAACAGTATAAGAAGCTTGCTCTTCATCTT 427
||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||||||||
Sbjct 240 GAGCAAAATGCAGATGAAAATATCATTAAGAAACAGTATAGGAAGCTTGCCCTTCATCTT 299
Query 428 CATCCGGACAAAAACAAACTCCCTGGTGCTGAATCTGCTTTCAAAACTATTGGTGAAGCT 487
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 300 CATCCTGACAAAAACAAACTCCCTGGTGCTGAATCTGCTTTCAAAACCATTGGTGAAGCT 359
Query 488 CAGAGGGTTCTTTTGGACAAGGATAAAAGGAGGTTTCATGACATGAGACGAAAACCTGTC 547
|||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 360 CAGAGGATTCTTTTGGACAAAGATAAAAGGAGGTTTCATGACATGAGACGGAAACCCGTT 419
Query 548 TTTAGAAGGCCTGCACCAGCACCAGCACCAGCACCATCATTTCAACCACCCCAACAAGCC 607
||||| |||||||||||||||||||||||||| | ||||||| | |||||||||||||
Sbjct 420 TTTAGGCGGCCTGCACCAGCACCAGCACCAGCAACGTCATTTC-A--ACCCCAACAAGCC 476
Query 608 CCGACCACACCTTTTTTCACTCAGCGTGGTTTCCAGACAAATGTTAATGTGGCAAGGAAG 667
|||||||| ||||||||||||||||||| |||||||||||| | ||||| || |||||||
Sbjct 477 CCGACCACGCCTTTTTTCACTCAGCGTGTTTTCCAGACAAACGATAATGCGGAAAGGAAG 536
Query 668 AGACCTGAAAACCAGAAGAAACCTCAAGCTCAACCAACTGGGTTTGATGGTCTCGCCAGC 727
|||||||||||||||||||||||||||| |||||||||||||| || |||| | ||||
Sbjct 537 AGACCTGAAAACCAGAAGAAACCTCAAGTTCAACCAACTGGGTCTGGTGGTGGCTCCAGG 596
Query 728 TTTACG-ACCTCATGCGCATTTTGTCACAGGAAGTATGAATATCAAAGGAAATTAATCAA 786
||| | ||||| ||| | ||||||| || || |||||||||||||||| |||||||||
Sbjct 597 TTT-TGTACCTCGTGCCCTTTTTGTCGCAAGATGTATGAATATCAAAGGGGATTAATCAA 655
Query 787 CACACTG-ATGACTTGTTTGAATTGCGGTAAGCAATACGTTGCTTTTCAAG-AAACTTTC 844
||||| | |||| |||||||| |||||||||||||||| |||||||||||| |||||||
Sbjct 656 CACAC-GAATGAATTGTTTGAGTTGCGGTAAGCAATACATTGCTTTTCAAGAAAACTTT- 713
Query 845 CA---ACCACCAGTTCAGCCGACTTTCTCCTTCTTCCAACAGAGCAAGGTTCCTACACAA 901
| |||||||||||| |||||||| ||||||||||||| || |||||||| ||||||
Sbjct 714 GAGGGTCCACCAGTTCAGGCGACTTTCCCCTTCTTCCAACAAAGTAAGGTTCCAACACAA 773
Query 902 GAGGCAGGCAAGGCAGTGGAGAAGCAGCCAG-AAAGTTGTGCTAAAAGtttttttAGTAA 960
||||||||||||||||||||||||||||| | |||||| ||||||||||| || |||||
Sbjct 774 GAGGCAGGCAAGGCAGTGGAGAAGCAGCC-GCAAAGTTCTGCTAAAAGTTCCTTAAGTAA 832
Query 961 AGAGGGTTCTAGAGCAAAAAGCTCTGGTGTTTCTGCTGAGAACATCAATGGAAAGAGAAA 1020
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 833 AGAGGGTTCTAGAGCCAAAAGCTCTGGTGTTTCGGCTGAGAACATCAATGGAAAGAGAAA 892
Query 1021 GAGGAAGAAGGTCGTTGAATCCAGTGACAGCTCTTGCAGCGAGAGCAGTATTGACTGCAA 1080
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 893 GAGGAAGAAGGTAGTTGAATCCAGTGACAGCTCTTGCAGCGAGAGCAGTATTGAGTGCAA 952
Query 1081 TGAAGTTCCAGCTGGTGGACAAGATTCGGGGTCCAGCGGTGCACAGCATTCTCGGAGGTC 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 AGAAGTTCCAGCTGGTGGACAAGATTCGGGGTCCAGCGGTGCACAGCATTCTCGGAGGTC 1012
Query 1141 TGTCCGTAGCAAGCAGCAGGTTTCATATAAAGAG-----GA----T-A--A-A-----GA 1182
||||||||||||||||||||||||||||||||| || | | | | ||
Sbjct 1013 AGTCCGTAGCAAGCAGCAGGTTTCATATAAAGAGAATAAGAGCGATGATGACAATAAAGA 1072
Query 1183 AGAGGATGCAGAAAGTGCTGAGGAGTCTGATTTCAGAAAGAAGTCACATGAGGATCAACC 1242
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1073 AGAGGATGCAGAAAGTGCTGAGGAGTCTGATTTTAGAAAGAAGTCACATGAGGGTCAACT 1132
Query 1243 GTTTACAGAAACCTTGCCAAATGGTTTAAACAGGACAAAGAAGAGTAAA 1291
|||| |||||||||||||||||||| |||||||||| ||||||| ||||
Sbjct 1133 GTTTGCAGAAACCTTGCCAAATGGTATAAACAGGACGAAGAAGA-TAAA 1180
> Ahg488761 jgi|Araly1|488761|fgenesh2_kg.6__1895__AT5G18748.1
Length=201
Score = 130 bits (70), Expect = 6e-29
Identities = 81/86 (94%), Gaps = 2/86 (2%)
Strand=Plus/Minus
Query 1 AGACGAAGACAGATTCCAGTCAAAGAGGCAGTTGGGCATCGACGTGAGCTTTGACGGT-A 59
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
Sbjct 140 AGACGAAGACAGATTCCAGTCAAAGAGGCAGTTAGGCCTCGACGTGAGCTTTGACGGTGA 81
Query 60 CCCTATCTCCTCCGTTTCCTCTCTCT 85
|| |||||||||| ||||||||||||
Sbjct 80 CC-TATCTCCTCCTTTTCCTCTCTCT 56
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109623725110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5