BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18760.1
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941408 jgi|Araly1|941408|scaffold_601952.1 1893 0.0
Ahg477933 jgi|Araly1|477933|fgenesh2_kg.3__634__AT3G06330.1 477 1e-133
> Ahg941408 jgi|Araly1|941408|scaffold_601952.1
Length=1279
Score = 1893 bits (1025), Expect = 0.0
Identities = 1167/1234 (95%), Gaps = 15/1234 (1%)
Strand=Plus/Plus
Query 132 AGAAATTTTGTTCTCGCTAAAGA----t--tcttctactggttcttcttct--t-ct--t 180
||||||||||||||||||||||| | |||||| || |||||||||| | || |
Sbjct 39 AGAAATTTTGTTCTCGCTAAAGATTCTTCATCTTCTTCTTCTTCTTCTTCTACTCCTCCT 98
Query 181 -c---ttcttcttctCAGGTTAAAGAACAATCTGTTGAAGATGTATCCAGATCTCAGCCA 236
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 99 ACTTGTTCTTCTTCTCAGGTTAAAGAACAATCTGTTGAAGATGAATCCAGATCTCAGCCA 158
Query 237 AGTGGAAGCCAATTGGATGTTTCTATCCAAATACCACCAAAACCGACGCCTAGTTTAGGA 296
|||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct 159 AGTGGAAGCCAATTGGATGTTTCTATCCAAATACCACCAAAACCAATGCCCAGTTTAGGA 218
Query 297 ATTTTGAGAAATCTGAGTCTGAAAAGGAAAGCTTCTCTACCAAACTATGAGAGAAGATTG 356
|| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 ATCTTGCGAAATTTGAGTCTGAAAAGGAAAGCTTCTCTACCAAACTATGAGAGAAGATTG 278
Query 357 CTACTAAGTCCTAGTGTTTCAGAAACCAGTGAAAAGCCTCTTGTTGCAAGTCCGATCACA 416
||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 279 CTACTAAGTCCCACTGTTTCAGAAACCAGTGAAAGGCCTCTTGTTGCAAGTCCGATCACA 338
Query 417 TCGCCTTACTGGAAAAGGTGTTTGTCACTTCCTTCTAGTAATTCTGCTAAACTGTCTCTG 476
||||| |||||||| || ||||||||||||||||||| |||| |||||||||||||||||
Sbjct 339 TCGCCATACTGGAAGAGATGTTTGTCACTTCCTTCTACTAATGCTGCTAAACTGTCTCTG 398
Query 477 GTTGTATCTACAACGCCTGTTTCCGCTGTGGTGCATAGTGAACAGCCTAAGTCTAATAAA 536
||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 399 GTTGTCTCTACACCGCCTGTTTCAGCTGTGGTGCATAGTGAACAGCCTAAGTCTAATAAA 458
Query 537 GATGGTCTTCATGCATCTGTTTCAAGATCCTTGTCCATGAACAGAGTGATTGTACGAGCT 596
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 AATGGTGTTCATGCATCAGTTTCAAGATCCTTGTCCATGAACAGAGTGATTGTACGAGCT 518
Query 597 GTCTCTTTTGACGACAACAAAAATCACATTTCAAATGAAGCAAATGGCGATCAAATCACT 656
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 519 GTCTCTTTTGACGACAACAAAAATCACATTTCTAACGAAGCAAATGGCGATCAAATCACC 578
Query 657 CCAGTTCCTGCagaagaaacagaagaagaaattcctgaagaagaagCAGTATGCAGGATT 716
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 579 CCGGTTCCTGCAGAAGAAACAGAAGAAGAAATCCCTGAAGAAGAAGCAGTATGCAGGATT 638
Query 717 TGTCTTGATGTGTGCGAAGAAGGTAACACACTGAAAATGGAATGCAGTTGCAAAGGTGAC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 TGTCTTGATGTGTGCGAAGAAGGTAACACACTGAAAATGGAATGCAGTTGCAAAGGTGAC 698
Query 777 CTCAGACTTGTTCACGAGCATTGTGCCATTAAGTGGTTTAGTACAAAAGGAACACGAATC 836
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 699 CTCAGACTCGTTCACGAGCATTGTGCCATTAAGTGGTTTAGTACAAAGGGAACGCGAATC 758
Query 837 TGCGATGTATGCAGACAAGAAGTCCGGAACTTACCAGTGATACTCCTCCGTGTCCCAACA 896
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 759 TGCGATGTTTGCAGACAAGAAGTCCGGAACTTACCAGTGATACTGCTCCGTGTCCCAACA 818
Query 897 ATTAATCAACTTACCAATAGACGGGAACTCACTCAGCAGAGTTCAGAGCCACAAAGCATC 956
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 819 ATTAATCAACTTACCAATAGACGGGAACTCACTCAGCAGAGTTCACAGCCACAAACCATT 878
Query 957 AGTGTTGGGCAAGAGTTTGTAGTGCTTGTACTCATCAGCACCGTCTGCTACTTCTTCTTC 1016
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 AGTGTAGGGCAAGAGTTTGTAGTGCTTGTACTCATCAGCACCGTCTGCTACTTCTTCTTC 938
Query 1017 CTTGAACATTTACTGATTCGTGACTTGAATTCACAGGCAATATTTGTTGCAGCGCCATTT 1076
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 939 CTTGAACATTTACTGATTCGTGACTTGAATTCACAGGCAATCTTTGTCGCAGCGCCATTT 998
Query 1077 TCATTCACCCTTGCACTCTTAGCCTCAACTTTTGCCGTCATCCTCGCGATCAGAGAATAC 1136
||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 999 TCATTCACCCTAGCTCTCTTGGCCTCAACTTTCGCCGTCATCCTCGCGATCAGAGAATAC 1058
Query 1137 ATATGGACATACGCAGCTCTTGAGTTTGCACTAGTGGCATTGCTTGTTCATCTATTATAT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1059 ATATGGACATACGCAGCTCTTGAGTTTGCACTAGTGGCATTGCTTGTTCATCTGTTATAT 1118
Query 1197 GCTACACTTCGTGTGCCGGTTATCTATGCAATGCTTTTTGCAGGGATACTGGGTTTCGGG 1256
||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 1119 GCTACACTTGGTGTGCCGGTTATCTATGCAATGCTTTTCGCGGGGATTCTGGGTTTCGGG 1178
Query 1257 ATGGCAATGTGCTTAAACTTGTTGTGCATTTGTTATTCCTCTCGGCCTGTGCGGTTTCCG 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1179 ATGGCAATGTGCTTAAACTTGTTGTGCATTTGTTATTCCTCTCGGCCTGTGCGATTTCCG 1238
Query 1317 CGGAATACAAACTTAGTATAAAGATAGTCTCTTC 1350
| |||||||||||||||||||||| |||||||||
Sbjct 1239 CAGAATACAAACTTAGTATAAAGAAAGTCTCTTC 1272
> Ahg477933 jgi|Araly1|477933|fgenesh2_kg.3__634__AT3G06330.1
Length=1541
Score = 477 bits (258), Expect = 1e-133
Identities = 704/912 (77%), Gaps = 59/912 (6%)
Strand=Plus/Plus
Query 417 TCGCCTTACTGGAAAAGGTGTTTGTCACTTCCTTCTAGTA-ATTCTGCTAAACTGTCTCT 475
|||||||| |||||||| || || || |||||| ||| | || |||| ||| ||||||
Sbjct 477 TCGCCTTATTGGAAAAGATGCTTATCGCTTCCTAATAG-ACATGCTGCAAAATTGTCTCC 535
Query 476 GGTTGTATCTACAACGCCTGTTTCCGCTGTGGTGCATAGTGAACAGCCTAAGTCTAATAA 535
|||||||||||| | | ||||| |||| ||||| | ||| |||| | |||||||
Sbjct 536 GGTTGTATCTAC-A--CAAGTTTCAGCTGGGGTGCCTGGTG---AGCC---GCCTAATAA 586
Query 536 AGATGGTCTTCATGCATCTGTTTCAAGATCCTTGTCC--ATG-AACAGAGTGATTGTACG 592
|||| | | || | || || | ||| || || | | |||| ||||||||| ||
Sbjct 587 AGAT--TATCCAAG-GTC--CTT---G-TCCATGCCCGGAAGAAACAAAGTGATTGTGCG 637
Query 593 AGCTGTCTCTTTTGACGACAACAAAAATCACATTTCAAATGAAGCAAATGGC-GATCAAA 651
| | | ||||||||| || ||||| | |||| | |||| ||| | || |||||||
Sbjct 638 ATCCATATCTTTTGACAACCACAAAGCCCGTGTTTCCAGTGAAACAAGT-GCAGATCAAA 696
Query 652 TCAC-TCCAGTTCCTGCagaagaaacagaagaagaaattcctgaagaagaagCAGTATGC 710
|| | ||| |||||| | |||||||| || ||||||||||| ||||||||||| || |||
Sbjct 697 TCTCTTCC-GTTCCTCCTGAAGAAACTGATGAAGAAATTCCCGAAGAAGAAGCCGTGTGC 755
Query 711 AGGATTTGTCTTGATGTGTGCGAAGAAGGTAACACACTGAAAATGGAATGCAGTTGCAAA 770
||||| ||||| |||||||||||||| || || || |||||||||| ||||| ||||||
Sbjct 756 AGGATCTGTCTGGATGTGTGCGAAGAGGGCAATACTTTGAAAATGGAGTGCAGCTGCAAA 815
Query 771 GGTGACCTCAGACTTGTTCACG-AGCATTGTGCCATTAAGTGGTTTAGTACAAAAGGAAC 829
||||| |||||||||||||| | ||| |||||||| || |||||||||||||| |||||
Sbjct 816 GGTGATCTCAGACTTGTTCATGAAGC-GTGTGCCATGAAATGGTTTAGTACAAAGGGAAC 874
Query 830 ACGAATCTGCGATGTATGCAGACAAGAAGTCCGGAACTTACCAGTGATACTCCTCCGTGT 889
| ||| ||| || || || ||||||||||| |||||||||||| | | | | |||||
Sbjct 875 AAGAACCTGTGACGTCTGTAGACAAGAAGTAAAGAACTTACCAGTTACATTGGTTCGTGT 934
Query 890 -CCCAACAATTAATCAACTTACCAATAGACGGGAACTCACTC-AGCAGAGTTCAGAG-C- 945
||| |||| |||||||| | ||| ||||| || | | || | || | | | | |
Sbjct 935 GCCC-ACAAGTAATCAACCAAACAACAGACGTGATCGCGGTCAACCA-A-AT-A-TGCCT 989
Query 946 -CACAAAGCATCAGTG-TTGGGCAAGAGTTTGTAGTGCTTGTACTCATCAGCACCGTCTG 1003
|||||| ||| |||| || ||||||||||||| ||||| || || |||||||| |||||
Sbjct 990 TCACAAACCATAAGTGCTT-GGCAAGAGTTTGTGGTGCTAGTTCTAATCAGCACAGTCTG 1048
Query 1004 CTACTTCTTCTTCCTTGAACATTTACTGATTCGTGACTTGAATTCACAGGCAA--TATTT 1061
||||||||||||||| || || |||||||||||||||||||| || | |||| |||||
Sbjct 1049 CTACTTCTTCTTCCTCGAGCAATTACTGATTCGTGACTTGAA--CA-A-GCAAGCTATTT 1104
Query 1062 --GTTGCAGCGCCATTTTCA-TTCACCCTT--GCACTCTTAGCCTCAACTTTTGCCGTCA 1116
| || |||||||||||| || | | || || |||||||| || | ||||||| |
Sbjct 1105 ACATCGCGGCGCCATTTTCACTT-A-CGTTAGGC-CTCTTAGCATCCATTTTTGCCATTG 1161
Query 1117 TCCTCGCGATCAGAGAATACATATGGACATACGCAGCTCTTGAGTTTGCACTAGTGG-CA 1175
||||||| ||||||||||||||||||||||||||||| || |||||||| || |||| ||
Sbjct 1162 TCCTCGCTATCAGAGAATACATATGGACATACGCAGCACTCGAGTTTGCGCTTGTGGGCA 1221
Query 1176 TTGCTTG-TTCATCTATTATATGCTACACTTCGTGTGCCGGTTATCTATGCAATGCTTTT 1234
| | ||| ||||| |||||||||||||| || | | ||| | |||| | || |||||
Sbjct 1222 T-G-TTGGTTCATATATTATATGCTACAGTTAGACTATCGGCGACCTATTCTATACTTTT 1279
Query 1235 TGCAGGGATACTGGGTTTCGGGATGGCAATGTGCTTAAACTTGTTGTGCATTTGTTATTC 1294
||||||||| || ||||| ||||| || ||||| |||||| ||||| | || |||||
Sbjct 1280 TGCAGGGATTCTTGGTTTTGGGATAGCCGTGTGCCTAAACTCGTTGTACCTTCATTATTT 1339
Query 1295 CTCTCGGCCTGT 1306
| || ||| |||
Sbjct 1340 CGCTTGGCGTGT 1351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58049533380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5