BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18770.1
Length=1784
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488764 jgi|Araly1|488764|fgenesh2_kg.6__1898__AT5G18770.1 2047 0.0
> Ahg488764 jgi|Araly1|488764|fgenesh2_kg.6__1898__AT5G18770.1
Length=1664
Score = 2047 bits (1108), Expect = 0.0
Identities = 1442/1602 (90%), Gaps = 28/1602 (2%)
Strand=Plus/Plus
Query 59 ACAGAAGAGAGATTAAATGGTAAATCTCATGCGGAAGTTCGCAAAATCGATTGGTAGACC 118
||||||||||||||||||||| |||||||| ||||||||||||||| | ||||| ||||
Sbjct 1 ACAGAAGAGAGATTAAATGGTTAATCTCATTCGGAAGTTCGCAAAAAGGGTTGGTCGACC 60
Query 119 GGGAACAGAATTTTGGAGAGGGGAAGATATGATAAGCGCATTACCTGATCATTTGCTATG 178
|||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 AGGAACACAAATTTGGAGAGGGGAAGATATGATAAGCTCATTACCTGATCATTTGCTATA 120
Query 179 TCATATACTTATTTTTCTTTCTACTGATGAATCTGTTTTGACGAGTGTTTTGTCTTCTAG 238
|| ||||||| ||||||| | || || ||| |||||| |||||||||||||||||||||
Sbjct 121 TCGTATACTTGGTTTTCTTACAACCGAGGAAGCTGTTTGGACGAGTGTTTTGTCTTCTAG 180
Query 239 ATGGAGAAATCTCTGGAAATGGGTTCCTAGGTTAGACTTAAACACCTCTGATTTCCCATA 298
||||||| ||||||||||||||||||||| |||||| ||| |||| |||||||||||||
Sbjct 181 ATGGAGACATCTCTGGAAATGGGTTCCTACGTTAGAATTAGACACGTCTGATTTCCCATT 240
Query 299 CCCTAATGACGTAACTTGTGCGGCTTTCATCGACAAGTTTCTGAATCTT-TATAACGAAT 357
|||| |||| |||||||||||||||||||||||||||||||||| || | | ||| |
Sbjct 241 CCCTTGTGACAAAACTTGTGCGGCTTTCATCGACAAGTTTCTGAAT-TTCCAGAGCGATT 299
Query 358 CCTACTTGCGGGAATTCAAGTTAAGAATTGACCAAGCTAACTTTCGCAGTAATGTATCTC 417
|||||||||| |||||||||||||||||||||| | | | | ||| |||||||||
Sbjct 300 CCTACTTGCGCGAATTCAAGTTAAGAATTGACC-A--T-A-----GAAGTGATGTATCTC 350
Query 418 TTTATGAGCCGTGTCTTGGTGTAGTGATTAAGAAGCCCAACGTTCGGCATTTCCAAGTTG 477
|||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||
Sbjct 351 TTTATGAGCCGTGTCTCGGTGTAGTGATTAAGAAGCCCAATATTCGACATTTCCAAGTTG 410
Query 478 AGAGTGATCTGCTTGAGCATTGGTGCACTAGTGAGATACGATTAACCCTTTCTGCTTGCC 537
|||||||||||||||| |||||| ||| | |||||| | ||||||||||||||| |||
Sbjct 411 AGAGTGATCTGCTTGAACATTGGAACACCAATGAGATTCCATTAACCCTTTCTGCGTGCG 470
Query 538 AGGCATTGGTATGCTTAAAGCTCCATTTAGT-ATGGCTGAATGACTTTGAGTCTCTATCT 596
|||||||||| |||||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct 471 AGGCATTGGTGTGCTTAAAGCTCCATTTAGTGA-GGCTGAATGATTTTGAGTCTCTTTCT 529
Query 597 TTGCCCTGTCTCAAGATCATGTACTTGGAAGACGTTGTATTTCCTAGCGATGCGGCTGCA 656
|| || |||||||||||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 530 TTACCATGTCTCAAGATCATGTACTTGGAAGACGTTTTCTTTCCTAGCGATGCGGCTGTA 589
Query 657 GAGACGCTAATCTCGTGCTCTCCGGTTCTTGAAGATTTAAAACTAAGC-CTCCATAGAGA 715
|||| ||||||||| ||||||||||||||||||||||||||| | | | ||| ||||| |
Sbjct 590 GAGATGCTAATCTCTTGCTCTCCGGTTCTTGAAGATTTAAAAAT-ATCTCTCAATAGATA 648
Query 716 TGATGTTGTAGTTGTTCTACGTGTCTACTCACAGTCACTAAAGAGCTTCACTCTAAAACG 775
||||| ||| |||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 649 TGATGATGTCGTTGTTTTACGTGTCTACTCACAGTCGCTAAAGAGCTTCACTCTAAAACG 708
Query 776 GGCGGTTCCTGTTTATGCTATAAACGGTGCACATACAGTGTTGGTCGATACTCCGAGGCT 835
| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GAAGGATCCTGTTGATGCTATAAACGGTGCACATACAGTGTTGGTCGATACTCCGAGGCT 768
Query 836 TGTGTATATGAGTCTCATAGATTACCAATTCAAAAGCTTCAAGATAATCAGCATGAGTGA 895
|| ||||||||||||||| ||||||||||||||||||||||||||| | || ||||||||
Sbjct 769 TGAGTATATGAGTCTCATGGATTACCAATTCAAAAGCTTCAAGATATTAAGTATGAGTGA 828
Query 896 CTATGTCAAGGTTGATCTTGATGTCGACTTTGAACTGATGCGTGATGAA-TTATCGGAAA 954
|| |||||||||||||||||||||| ||||||| |||||||||||| || ||||||||||
Sbjct 829 CTCTGTCAAGGTTGATCTTGATGTCAACTTTGAGCTGATGCGTGAT-AACTTATCGGAAA 887
Query 955 GAAATATTGTCTATGATCTTCTCAACAATTTTTCAGGTGTTAGAAATATGACCATCTCGT 1014
||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 888 GAAATATCATCTATAATCTTCTCAACAATTTTTCAGGTGTTAGAGATGTGACCATCTCAT 947
Query 1015 GG-ACAACTCTTAAGTTTATCCATAGATTCCATGACATGAACCCACTACCCAAATTTCGT 1073
|| | |||||||||||||||| |||| || || |||||||||||||||||||||||||
Sbjct 948 GGTA-AACTCTTAAGTTTATCTATAGTTTGCAGGACATGAACCCACTACCCAAATTTCAC 1006
Query 1074 GACTTGACCCGTTTGCGTGCAACTATGTCCTCAG-ACGCCTCTCTGGAAGTGTTGCGAAT 1132
|||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||| |||
Sbjct 1007 GACTTGACCCGTTTGCGTGCTACTATGTTCTC-GAACGCCTCTCTGGAAGTGTTGCCAAT 1065
Query 1133 CGTTCTTGAGAGCTGCCCGAAGCTGAAACACTTTCA-CTTCACCTTGGAATTGGTTAATG 1191
||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 1066 CGTTCTTGAGAGCTGCCCGAAGCTGAAACAC-TTCACCTTGGTAATGGAATTGGTTAATG 1124
Query 1192 ATTTTCCAGAGGCAGTAATAACTGGATTCTCGAGA-GTGTTACCTCGTTGTTTGGTATTT 1250
||| ||||| ||||||||||||| || |||| | | ||| | ||| |||||||||||
Sbjct 1125 ATTATCCAGTGGCAGTAATAACTAGACTCTC-AAATGTGCTGTCTCATTGTTTGGTATCG 1183
Query 1251 TCCCTTGAATCCGTTGAAATGGAAAGCCCGATCACGGAGAAAGCAACGGAACTGAAACTG 1310
|| |||||| ||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1184 TCTCTTGAAACCGTTGAAATGGAAAGCCCGATCACGGAGAAAGCAACAGAGCTGAAACTG 1243
Query 1311 GTAAGATACTTTCTGGAGAACTCAGCAACACTCAAGAAGCTTGTTCTACTTCTGAATCAT 1370
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1244 GTTAGATACTTTCTGGAGAACTCAGCAACACTCAAGAAGCTTGTTCTACGTCTGAATCAT 1303
Query 1371 GAGTCTACTGGAGAGAAACACGAGCCTGGTGTCTTGAAACAACTCATTGAATCTCCAAGA 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 GAGTCTACTGGAGAGAAACACGAGCCTGGTGTCTTGAAACAACTCATTGAATCTCCAAGA 1363
Query 1431 CGCTCTAGTTTGTGTCAATTTGAAGTTCTTGCAGTGCCTCCAAATCCGGAACCGTGGTGG 1490
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1364 CGTTCTAGTTTGTGTCAATTTGAAGTTCTTCCAGTGCCTCCAAATCCGGAACCGTGGTGG 1423
Query 1491 ATTTATGTAAAACCCCAGAGGTTTCTTTAGTGCTATCGCTGATGAAATTCTCATACCTTC 1550
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1424 ATTTATGTAAAACCACAGAGGTTTCTTTAGTGCTATTGCTGATGAAATTCTCATGGCTTC 1483
Query 1551 CTTT-ATGTTACTCTATTTTTATTACGTCTATGTTGTAACCTACATCAAAGTTGCATTTG 1609
|||| ||||| |||| ||||| ||| |||||||||||||||||||||||||||||||| |
Sbjct 1484 CTTTTATGTTGCTCTGTTTTTGTTATGTCTATGTTGTAACCTACATCAAAGTTGCATTCG 1543
Query 1610 ACAAAGGAAGGG--GACGGTCTAGTCCAAAAGTTTGCCACTA 1649
||||||| ||| ||||||||||||||||| ||| ||||||
Sbjct 1544 ACAAAGGGAGGCTAGACGGTCTAGTCCAAAACTTTACCACTA 1585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66962650710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5