BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18780.1
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488765 jgi|Araly1|488765|fgenesh2_kg.6__1899__AT5G18780.1 1980 0.0
> Ahg488765 jgi|Araly1|488765|fgenesh2_kg.6__1899__AT5G18780.1
Length=1329
Score = 1980 bits (1072), Expect = 0.0
Identities = 1241/1324 (94%), Gaps = 6/1324 (0%)
Strand=Plus/Plus
Query 332 AGGACGAGTTAGG-GGAAGTGGGGAAGACAGGATAAGCATATTACCTGAACCATTGCTAT 390
|||||||||| || |||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 9 AGGACGAGTT-GGTACAAGTGGGGAAGACAGGTTAAGCATATTACCTGAACCATTGTTAT 67
Query 391 GTCATATACTTAGCTTTCTTAGGACTAAAGATTCTGTTAGGACAAGTGTTCTGTCTTCTA 450
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||
Sbjct 68 GTCATATACTTAGCTTTCTTAGGACTAAAGATTCGGTTAGGACAAGTGTTTTGTCCTCTA 127
Query 451 GATGGAGAGATCTCTGGCTATGGGTTCCTAGATTAGACTTGGACAAATCCGACTTCTCTG 510
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
Sbjct 128 GATGGAGAGATCTCTGGCTTTGGGTTCCTATATTAGACTTGGACAAATCCGACTTCTCAG 187
Query 511 ATGACAATCCATCTGCCAGTTTCGTCGATAAGTTTCTGAATTTTCGAGGTGAATCTTACT 570
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 ATGACATTCCCTCTGCCAGTTTCGTCGATAAGTTTCTGAATTTTCGAGGTGAATCTTACT 247
Query 571 TGCGTGGATTCAAGTTAAACACTGACCACGATGTCTATGACATTTCTACACTCGACGCCT 630
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 248 TGCGTGGATTCAAGTTAAACACTGACCACGATGTCTATGACACTTCTACACTCGAGGCCT 307
Query 631 GTCTGATGAGACTTGATAAGTGTAAGATTCAGCATTTTGAAATCGAGAATTGTTTTGGCT 690
|||||||| |||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 308 GTCTGATGGGACTTGTTAAGTGTAGGATTCAGCATTTTGAAATCGAGAATTATTTTGGCT 367
Query 691 TTTGTATCCTCCTGATGCCTTTGATAATTCCAATGTGTCACACTTTGGTAAGCTTGAAAC 750
||||||||||| ||||||||||||| || ||||||||||||| ||||||| ||||||||
Sbjct 368 TTTGTATCCTCATGATGCCTTTGATCCTTTCAATGTGTCACACATTGGTAACCTTGAAAC 427
Query 751 TCAGTTTCGTAATTCTGAGTAAATTCGGGTCTCTTTCTTTACCCTGTCTCGAGATAATGC 810
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 428 TCAGTTTCGTAATTCTGAGTAAATTCGAGTCTCTTTCCTTACCCTGTCTCGAGATAATGC 487
Query 811 ACTTTGAAAAGGTTATATTTCCCAGTGACAAGTCTGCAGAGGTGCTAAT-TGCATGCTCT 869
|||| ||||||||||||||||| |||||||| ||||||||| ||||| | ||||||||
Sbjct 488 ACTTCGAAAAGGTTATATTTCCGGGTGACAAGGCTGCAGAGGCACTAATCT-CATGCTCT 546
Query 870 CCGGTTCTTAGAGATTTGAGAATAAGCCAGAGTGGAGATGATGCTGTTGAAGTTTTACGC 929
||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||
Sbjct 547 CCGGTTCTTAGAGATTTGAAAATAAGCCAGAGTAGAGATGATGCTGTAGAAGTTTTACGC 606
Query 930 GTCTGCTCTGCCTCACTGAAGAGCTTCACTCTGAAACGGACGGATCATGATTATGTTGGA 989
||||||||||||||||| |||||||||||| |||||| || |||| |||||||||| ||
Sbjct 607 GTCTGCTCTGCCTCACTAAAGAGCTTCACTTTGAAACTAACTGATCGTGATTATGTT-GA 665
Query 990 -AATGGTGAATATACAGTTGTGATCGATACTCCGAGACTTGAGTATCTGAATCTCAAAGA 1048
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 CAATGGTGGATTTACAGTTGTGATCGATACTCCGAGACTTGAGTATCTGAATCTCAAAGA 725
Query 1049 TTATCAATGCCAAGGCTTCAAGATAGTCAGTATGAGTGAATATGTCAGGGTTCATGTTGA 1108
||| |||||| ||||||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 726 TTACCAATGCAAAGGCTTCAAGATAGTCAGTATGAGTGAAGATGTCAAGGTTGATGTTGA 785
Query 1109 TGTCGTATTTGAAGTGATAGGTGGTACTGTATTGTCGAAAAGAAATATCATTTGTGATTT 1168
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 786 TGTCGTATTTGAAGTGATAGGTGGTACGGTATTGTCCAAAAGAAATATCATTTGTGATTT 845
Query 1169 TCTATCCTGTGTCTCAAACGTCAGATATATGACCATCTCAAGGAGGAGTCTTGAGTTCAT 1228
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TCTATCCTGTGTTTCAAATGTCAGATATATGACCATCTCAAGGAGGAGTCTTGAGTTCAT 905
Query 1229 CTATCGTCACCTGGAATTGAAGCCACGATTCAAATTTCATGACTTGGCTCGTTTGCGTGC 1288
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 906 CTATCGTCACCTGGAATTGAAGCCACGATTCAAATTTCATGACTTGGCTCGTCTGCGTTC 965
Query 1289 TACTATGTTCTCAAACTCCTCTCCGGAAATGTTGCCAGTCATTCTTGAGACATGCCCGAA 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 966 TACTATGTTCTCAAACTCCTCTCCGGAAATGTTGCCAGTCATTCTTGAGACATGCCCAAA 1025
Query 1349 TCTGAAACACCTCACCTTGGAATTGGTTCATGATTCTCTAGTGACGGAGGGGACAAGTGG 1408
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 1026 TCTGAAACACCTCACCTTGGAATTGGTTCATGATTCTCTAGTAACAGAAGGGACAAGTGG 1085
Query 1409 ACTTTTGACTGTGCTGCCTCGTTGTTTGATATCATCCCTTGCATCTGTCGATATCGAAAG 1468
||||||||||| | ||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1086 ACTTTTGACTGCCCCGCCTCGTTGTTTGATTTCATCCCTTGAATCTGTCGATATCGAAAG 1145
Query 1469 CCCAATCACGGATAAAGCAACGGAACTGAAACTGGTTAGCTACTTGTTGGAGAACTCGAC 1528
||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1146 CCCGATAACGGATAAAGCAACGGAACTGAAACTGGTTAGCTACTTTTTGGAGAACTCGAC 1205
Query 1529 AACTCTGAAGAAGCTTGTTCTACGTTTGAATCAGTCTTGTAGAGATAAATATGAGCCAGG 1588
||| || |||||||||||||| |||||||||||||||||| |||||||| | ||||| ||
Sbjct 1206 AACACTCAAGAAGCTTGTTCTTCGTTTGAATCAGTCTTGTCGAGATAAACACGAGCCGGG 1265
Query 1589 TCTCTTGAAACAAGTCTTACAATCTCCAAGGTGCTCTAGTTTGTGTCAATTAGTCATTCT 1648
||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 1266 TCTCTTGAAACAACTCTTAGAATCTCCAAGGTGCTCTAGTTTGTGTCAACTAGTCATTAT 1325
Query 1649 CTGA 1652
||||
Sbjct 1326 CTGA 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61934738370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5