BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G18790.1

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941410 jgi|Araly1|941410|scaffold_601954.1                        337    5e-92
  Ahg477932 jgi|Araly1|477932|fgenesh2_kg.3__633__AT3G06320.1          261    3e-69


> Ahg941410 jgi|Araly1|941410|scaffold_601954.1
Length=219

 Score =  337 bits (182),  Expect = 5e-92
 Identities = 191/195 (98%), Gaps = 1/195 (1%)
 Strand=Plus/Plus

Query  41   GTCAA-GTGAGAAAATGGGGGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTTGTCT  99
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  8    GTCAAGGTGAGAAAATGGGGGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTTGTTT  67

Query  100  CAGCTGCTGGAACTGGTTTCTTCTATGTCAAGAGGAAGAGTACCAAGGGACTTCTTGAGA  159
            |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct  68   CAGCTGCTGGAACTGGATTCTTCTATGTCAAGAGGAAGAGTACCAAGGGCCTTCTTGAGA  127

Query  160  AGCTCGAGTTCCGTAAGTACGATCCTCGAGTCAACCGTCATGTCCTCTTCACTGAGCAGA  219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  128  AGCTCGAGTTCCGTAAGTACGATCCTCGAGTCAACCGTCATGTCCTCTTCACTGAGCAGA  187

Query  220  AGATGAAGTGACGGA  234
            |||||||||||||||
Sbjct  188  AGATGAAGTGACGGA  202


> Ahg477932 jgi|Araly1|477932|fgenesh2_kg.3__633__AT3G06320.1
Length=375

 Score =  261 bits (141),  Expect = 3e-69
 Identities = 165/177 (93%), Gaps = 0/177 (0%)
 Strand=Plus/Plus

Query  54   ATGGGGGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTTGTCTCAGCTGCTGGAACT  113
            ||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct  57   ATGGGTGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTAGTTTCAGCAGCTGGAACT  116

Query  114  GGTTTCTTCTATGTCAAGAGGAAGAGTACCAAGGGACTTCTTGAGAAGCTCGAGTTCCGT  173
            || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  117  GGATTCTTCTATGTCAAGAGGAAGAGTACTAAGGGACTTCTTGAGAAGCTCGAGTTCCGT  176

Query  174  AAGTACGATCCTCGAGTCAACCGTCATGTCCTCTTCACTGAGCAGAAGATGAAGTGA  230
            ||||||||||||||||| || || ||||||||||| || |||||||| |||||||||
Sbjct  177  AAGTACGATCCTCGAGTTAATCGCCATGTCCTCTTTACAGAGCAGAAAATGAAGTGA  233



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16712147982


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5