BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18790.1 Length=462 Score E Sequences producing significant alignments: (Bits) Value Ahg941410 jgi|Araly1|941410|scaffold_601954.1 337 5e-92 Ahg477932 jgi|Araly1|477932|fgenesh2_kg.3__633__AT3G06320.1 261 3e-69 > Ahg941410 jgi|Araly1|941410|scaffold_601954.1 Length=219 Score = 337 bits (182), Expect = 5e-92 Identities = 191/195 (98%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 41 GTCAA-GTGAGAAAATGGGGGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTTGTCT 99 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 8 GTCAAGGTGAGAAAATGGGGGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTTGTTT 67 Query 100 CAGCTGCTGGAACTGGTTTCTTCTATGTCAAGAGGAAGAGTACCAAGGGACTTCTTGAGA 159 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 68 CAGCTGCTGGAACTGGATTCTTCTATGTCAAGAGGAAGAGTACCAAGGGCCTTCTTGAGA 127 Query 160 AGCTCGAGTTCCGTAAGTACGATCCTCGAGTCAACCGTCATGTCCTCTTCACTGAGCAGA 219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 128 AGCTCGAGTTCCGTAAGTACGATCCTCGAGTCAACCGTCATGTCCTCTTCACTGAGCAGA 187 Query 220 AGATGAAGTGACGGA 234 ||||||||||||||| Sbjct 188 AGATGAAGTGACGGA 202 > Ahg477932 jgi|Araly1|477932|fgenesh2_kg.3__633__AT3G06320.1 Length=375 Score = 261 bits (141), Expect = 3e-69 Identities = 165/177 (93%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 54 ATGGGGGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTTGTCTCAGCTGCTGGAACT 113 ||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||| Sbjct 57 ATGGGTGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTAGTTTCAGCAGCTGGAACT 116 Query 114 GGTTTCTTCTATGTCAAGAGGAAGAGTACCAAGGGACTTCTTGAGAAGCTCGAGTTCCGT 173 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 117 GGATTCTTCTATGTCAAGAGGAAGAGTACTAAGGGACTTCTTGAGAAGCTCGAGTTCCGT 176 Query 174 AAGTACGATCCTCGAGTCAACCGTCATGTCCTCTTCACTGAGCAGAAGATGAAGTGA 230 ||||||||||||||||| || || ||||||||||| || |||||||| ||||||||| Sbjct 177 AAGTACGATCCTCGAGTTAATCGCCATGTCCTCTTTACAGAGCAGAAAATGAAGTGA 233 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16712147982 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5