BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G18800.1

Length=670
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488766 jgi|Araly1|488766|fgenesh2_kg.6__1900__AT5G18800.1         808    0.0  


> Ahg488766 jgi|Araly1|488766|fgenesh2_kg.6__1900__AT5G18800.1
Length=564

 Score =  808 bits (437),  Expect = 0.0
 Identities = 481/502 (96%), Gaps = 3/502 (1%)
 Strand=Plus/Plus

Query  5    CCGTCGGACTCAGTGGAGAAGAAGAAGAAGATCCAAATCGATCCGTTGAAAAGTTTCTCC  64
            ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    CCGTCCGACTCACTGGAGAAGAAGAAGAAGATCCAAATCGATCCGTTGAAAAGTTTCTCC  60

Query  65   ATTTCGGATTCTGGTTTAGGAATTTCGAATTTGCTGTGCGATGTCGAGTGCGGTGGACGC  124
            | ||||||||||||||||||  |||||||||| ||  |||||||||||||||||||||||
Sbjct  61   A-TTCGGATTCTGGTTTAGGGCTTTCGAATTT-CTAAGCGATGTCGAGTGCGGTGGACGC  118

Query  125  TACGGGAAACCCGATCCCTACTTCGGCGGTTTTAACGGCGTCAGCGAAGCATATAGGTAT  184
            |||||| || ||||||||||| |||||||| || ||||| ||||||||||||||||||||
Sbjct  119  TACGGGTAATCCGATCCCTACGTCGGCGGTGTTGACGGCATCAGCGAAGCATATAGGTAT  178

Query  185  GAGGTGTATGCCGGAGAATGTTGCGTTCCTCAAATGCAAGAAGAATGATCCAAACCCAGA  244
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  GCGGTGTATGCCGGAGAATGTTGCGTTCCTCAAATGCAAGAAGAATGATCCAAACCCAGA  238

Query  245  GAAGTGTCTCGACAAAGGTCGTGACGTCACTCGCTGCGTGCTTGGCTTGCTGAAGGATCT  304
            ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  239  GAAATGCCTCGACAAAGGTCGTGACGTCACTCGCTGCGTGCTTGGCTTGCTGAAGGATCT  298

Query  305  TCACCAGAAGTGCCAAAAGGAGATGGATGATTATGTTGGGTGTATGTATTACTACACAAA  364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  299  TCACCAGAAGTGCCAAAAGGAGATGGATGATTATGTTGGGTGTATGTATTACTACACAAA  358

Query  365  CGAGTTTGATCTGTGTAGGAAAGAGCAAGAAGCCTTCGAGAAAGTGTGTCCCTTGAAATG  424
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  359  CGAGTTTGATCTGTGTAGGAAAGAGCAAGAAGCCTTCGAGAAAGTGTGCCCCTTGAAATG  418

Query  425  AGAATCACAAGTTCTTGTCATGTTTTGATTTGTATCTCA-TAATAAAGCAAAATGTTCAT  483
            | ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct  419  ATAATCACAAGTTCTTGTCATGTTTTGATTTGTATCTCCCTAATAAAGCAAAATGTTCAT  478

Query  484  TTTTGAATGAGCTTTACTCTCT  505
            ||||||||||||||||||||||
Sbjct  479  TTTTGAATGAGCTTTACTCTCT  500



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24589281465


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5