BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G18810.1

Length=1085
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg893801 jgi|Araly1|893801|Al_scaffold_0006_1797                    224    1e-57


> Ahg893801 jgi|Araly1|893801|Al_scaffold_0006_1797
Length=561

 Score =  224 bits (121),  Expect = 1e-57
 Identities = 161/180 (89%), Gaps = 3/180 (2%)
 Strand=Plus/Plus

Query  168  ATGGCTAGAGCGAGAAGCCGGAGCAGAAGCTATAGTCCCCGTCCTCGTGACAGGTCACCA  227
            ||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  1    ATGGCTAGAGCTAGGAGCCGGAGCAGAAGCTATAGTCCCCGTCTTCGTGACAGGTCACCA  60

Query  228  CCTC-GCGAACG-G-AAAGGCTACGACGATAATCGCCTCCGCGAACGTCCGTCTTCTCGT  284
            || | |||  || | ||| ||||||||||| |||||| ||| ||||| || |||||||| 
Sbjct  61   CCACCGCGTGCGCGGAAAAGCTACGACGATTATCGCCACCGTGAACGCCCCTCTTCTCGC  120

Query  285  GATCACGAATCCTCTGGTCCTTCTGGTTTGCTTATCCGTAATCTCCCTCTCGATGCTAGG  344
            || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  121  GACCACGAATCCTCTGGTCCTTCTGGTTTGCTCATCCGTAACCTCCCTCTCGATGCTAGG  180



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40410292020


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5