BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18820.1
Length=1962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488768 jgi|Araly1|488768|fgenesh2_kg.6__1902__AT5G18820.1 2870 0.0
> Ahg488768 jgi|Araly1|488768|fgenesh2_kg.6__1902__AT5G18820.1
Length=1898
Score = 2870 bits (1554), Expect = 0.0
Identities = 1768/1870 (95%), Gaps = 19/1870 (1%)
Strand=Plus/Plus
Query 10 taaaaatcaaaaCCCTTCGATAAACCTCCCGGAGGA-GAGGA-GACACCCGAAATGTTCG 67
|||||||||||||||||||||||||||||| | | ||| || | |||||||||||
Sbjct 4 TAAAAATCAAAACCCTTCGATAAACCTCCCTAACAACCCGGAGGAGA--CGAAATGTTCG 61
Query 68 CCGTATCACCGTCGTCATTCTCGCCGACAACCATTTCTCCGCGCCGTAGTGGACAGAGGA 127
|||| ||||||||||| ||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 62 CCGTTTCACCGTCGTCCTTCTCGCCGACAACCATATCTCCGAGCCGCAGTGGACAGAGGA 121
Query 128 ACGAACCTCGAAAATTCTCGGTGGTGAGAGCTGGAGCTAAGAGAATACTATACGGTAAAG 187
|| |||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 122 ACAAACCTCGAAAATTCTCGGTGGTGAGAGCAGGAGCTAAGAGAATACTGTACGGAAAAG 181
Query 188 ATAGCAGAGAGAAACTCCAAGCCGGAATCGATAAGTTAGCTGATGCTGTTTCCATCACCT 247
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 ATAGCAGAGAGGCACTCCAAGCCGGAATCGATAAGTTAGCTGATGCTGTTTCCATCACCT 241
Query 248 TAGGCCCTAGAGGGCGTAATGTAGTGCTTGCTGAAAAAGATACAATCAAAGTGATTAACG 307
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TAGGTCCTAGAGGGCGTAATGTAGTGCTTGCTGAAAAAGATACAATCAAAGTGATTAACG 301
Query 308 ATGGTGTCACCATTGCTAAATCTATTGAGCTTCCTGACACTATTGAGAACGCTGGAGCAA 367
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 302 ATGGTGTCACCATTGCTAAATCTATTGAGCTTCCTGACACGATTGAGAACGCTGGAGCAA 361
Query 368 CATTAATCCAAGAGGTTGCGATTAAAATGAACGAATCAGCGGGTGACGGGACAACCACTG 427
||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 362 CATTAATCCAAGAGGTTGCGATTAAAATGAATGACTCAGCGGGTGATGGGACAACCACTG 421
Query 428 CAATCATTTTGGCTAGAGAAATGATCAAAGCTGGTTCTTTGGCTATTGCTTTTGGAGCTA 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CAATCATTTTGGCTAGAGAAATGATCAAAGCTGGTTCTTTGGCTATTGCTTTTGGAGCTA 481
Query 488 ATGCTGTTTCTGTGAAGAATGGAATGAATAAGACTGTTAAAGAGTTGGTCAGGGTGTTGC 547
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 ATGCTGTTGCTGTGAAGAATGGAATGAATAAGACTGTTAAAGAGTTGGTCAGGGTGTTGC 541
Query 548 AGATGAAAAGTATTCCTGTTC-AAGGGAAGAATGATATTAAAGCTGTGGCTTCAATCTCT 606
|||||||||||||||||| || |||||||||||||| ||||||| |||||||||||||||
Sbjct 542 AGATGAAAAGTATTCCTG-TCAAAGGGAAGAATGATGTTAAAGCCGTGGCTTCAATCTCT 600
Query 607 GCTGGTAACGATGAATTTGTGGGGAATTTGATTGCTGAGACTGTGGAAAAGATTGGCCCT 666
||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 601 GCTGGCAACGATGAATTTGTGGGGAACTTGATTGCTGAAACTGTGGAAAAGATTGGCCCT 660
Query 667 GATGGTGTCATCTCCATTGAATCATCTTCCACTTCAGAAACGTCTGTTATAGTTGAGGAA 726
||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 661 GATGGCGTCATCTCCATTGAAACATCTTCCACTTCAGAAACGTATGTTATAGTTGAGGAA 720
Query 727 GGAATGAAGTTTGACAAGGGCTATATGTCGCCTCATTTCATCACAAATCAGGAGAAATCT 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGAATGAAGTTTGACAAGGGCTATATGTCGCCTCATTTCATCACAAATCAGGAGAAATCT 780
Query 787 ACGGTGGAATTCGACAAAGCTAAAATTCTTGTGACGGATCAGAAAATCACTTCAGCCAAA 846
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 781 ACTGTGGAATTCGACAAAGCTAAAATCCTTGTGACGGATCAAAAAATCACTTCAGCCAAA 840
Query 847 GAATTAGTTCCGTTACTGGAGAAAACCTCACAACTGAGTGTTCCGCTCCTTATAATTGCA 906
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAACTAGTTCCGTTACTGGAGAAAACCTCACAACTGAGTGTTCCGCTCCTTATAATTGCT 900
Query 907 GAAGATATCTCTGCGGAAGTGCTTGAGATACTGGTGGTGAACAAGAAGCAAGGTTTGATC 966
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GAAGATATCTCAGCAGAAGTGCTTGAGATACTGGTGGTGAACAAGAAGCAAGGTTTGATC 960
Query 967 AATGTCGCAGTTGTGAAATGTCCAGGAATGTTGGATGGGAAAAAGGCTTTGCTACAAGAC 1026
|||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 961 AATGTCGCTGTTGTGAAATGTCCTGGGATGTTGGATGGGAAAAAGGCTTTGCTGCAAGAC 1020
Query 1027 ATTGCACTCATGACAGGAGCTGATTATCTTTCCGGAGATTTAGGCATGTCGCTCATGGGT 1086
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1021 ATTGCACTCATGACAGGAGCTGATTATCTTTCCGGAGATTTAGGCATGACTCTCATGGGA 1080
Query 1087 GCAACTTCAGATCAGCTGGGTGTTTCTCGTAGAGTAGTAATTACAGCTAATTCAACAACT 1146
|||||||| ||||||||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 1081 GCAACTTCGGATCAGCTGGGAGTTTCTTGGAGAGTAGTAATTACAGCTAATTCAACAACT 1140
Query 1147 ATAGTCGCAGACGCTTCTACTAAACCAGAGATTCAGGCAAGAATTGCTCAGATGAAGAAG 1206
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1141 ATAGTCGCGGACGCTTCAACTAAACCGGAGATTCAGGCAAGAATTGCTCAGATGAAGAAG 1200
Query 1207 GATCTAGCTGAGACAGATAATTCATATCTTTCaaaaaaaaTAGCAGAGAGAATTGCTAAG 1266
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1201 GATCTAGCTGAGACAGATAATTCATATCTTTCAAAAAAAATCGCAGAGAGAATTGCTAAG 1260
Query 1267 CTCACAGGAGGCGTGGCTGTAATAAAGGTTGGAGGCCACACTGAAACAGAACTTGAGGAC 1326
||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1261 CTCACAGGAGGTGTGGCTGTAATAAAGGTGGGAGGTCACACTGAAACAGAACTTGAGGAC 1320
Query 1327 AGAAAACTAAGAATAGAGGACGCGAAGAATGCTACATTTGCAGCCATGAGAGAAGGTATA 1386
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1321 AGAAAACTAAGAATAGAGGACGCGAAGAATGCTACATTTGCAGCCATGCGAGAAGGTATA 1380
Query 1387 GTTCCAGGTGGTGGTGCTACTTATATCCATCTTTTAGATGAGATACCGAGAATCAAGAAG 1446
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GTTCCAGGTGGTGGTGCCACTTATATCCATCTTTTAGATGAGATACCGAGAATCAAGAAG 1440
Query 1447 AATCTAATGGAAGATTCATACGAACAAATAGGTGCAGATATTGTAGCAATGGCACTCACT 1506
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1441 AATCTAATGGAAGATTCATACGAACAAATAGGTGCAGATATTGTAGCAATGGCACTCA-T 1499
Query 1507 G-CACCTGCAATGGCCATAGCAACCAATGCTGGGGTTGATGGATCAGTTGTGGTGCAGAA 1565
| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1500 GGCACCTACAATGGCCATAGCAACCAATGCCGGGGTTGATGGATCAGTTGTGGTGCAGAA 1559
Query 1566 AACCAGAGAACT-CGAATGGAGAAGTGGTTACAACGCAATGTCTGGAAAGTATGAGGATC 1624
|||||||||||| | |||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1560 AACCAGAGAACTTC-AATGGAGAAGTGGTTATAATGCAATGTCTGGAAAGTATGAGGATC 1618
Query 1625 TTCTAAACGCTGGAATCGCAGATCCTTGTCGGGTTTCAAGATTCGCCCTTCAAAACGCAG 1684
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1619 TTCTAAACGCTGGAATCGCAGATCCTTGTCGGGTTTCAAGATTCGCCCTCCAAAACGCGG 1678
Query 1685 TTTCCGTTGCCGGCATTATTCTCACAACTCAAGCAGTACTCGTGGAGAAGATCAAGCAAC 1744
|||| |||||||||||| ||||||| ||||||||||| || ||||||||||||||||| |
Sbjct 1679 TTTCTGTTGCCGGCATTGTTCTCACGACTCAAGCAGTGCTTGTGGAGAAGATCAAGCAGC 1738
Query 1745 CTAAACCTGCTGTTCCTCAAGTTCCTGGCATACCCACATCATAACCAACCACCACCAAAG 1804
|||||||||| |||||||||||||||||||||||||| |||| | | | ||||||||||
Sbjct 1739 CTAAACCTGCCGTTCCTCAAGTTCCTGGCATACCCACCTCATGA--A-C-ACCACCAAAG 1794
Query 1805 GTAACAAAGAAGCACAAAAACCAAACTCTCTACTGCAGATTTTGTCAGAATCTAAACCTT 1864
|| |||| | || | |||| ||||||||| | | || ||||||||| ||||| ||||||
Sbjct 1795 GTGACAA-GCAG-A-AAAA-CCAAACTCTTT-CAGCCGATTTTGTCTGAATCGAAACCTA 1849
Query 1865 TGCTCACAAA 1874
|||||| |||
Sbjct 1850 TGCTCAAAAA 1859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73742714320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5