BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18830.3
Length=2788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941415 jgi|Araly1|941415|scaffold_601959.1 3727 0.0
> Ahg941415 jgi|Araly1|941415|scaffold_601959.1
Length=2476
Score = 3727 bits (2018), Expect = 0.0
Identities = 2307/2441 (95%), Gaps = 42/2441 (2%)
Strand=Plus/Plus
Query 111 AATTG-AAGACTCTCAGATGTCTTCTCTGTCGCAATCGCC-ACCACCGCCGGAGATGGAT 168
||||| |||| |||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 9 AATTGAAAGA--CTCAGATGTCTTCTCTGTCGCAATCGCCAACC-CCGCCGGAGATGGAT 65
Query 169 ATCCAACCCCCGGCATTGGTTAACGATGATCCTTCCACTTATTCCTCCGCTTTATGGGAT 228
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 66 ATCCAACCGCCGGCATTGGTTAACGATGATCCTTCCACTTATTCCTCCGCTTTGTGGGAT 125
Query 229 TGGGGAGATCTCCTTGACTTCGCCGCAGACGAACGCC-T-TCTC----G--T-CGATCAA 279
||||||||||||||||||||||||||||||||||||| | |||| | | |||||||
Sbjct 126 TGGGGAGATCTCCTTGACTTCGCCGCAGACGAACGCCTTCTCTCTTTAGACTCCGATCAA 185
Query 280 ATTCATTTCCCTCCCGTT-CTCTCTCCTCCTCTACCGCCTCTGATTCCGACGCAAACTCC 338
| || ||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||
Sbjct 186 ACTCCTTTCCCTCCCGTTCCT-TCTCCTCCTCTTCCGCCGCTGATTCCGACGCAAACTCC 244
Query 339 GGCGGAATCTGAATTAG-ATCCTTCTCCGGAAGAATCGGGTTCTGGTTCGGATCGGGTTA 397
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 GGCGGAATCTGAATT-GTATCCTTCTCCGGAAGAATCGGGTTCTGGTTCGGATCGGGTTA 303
Query 398 GGAAGCGAGACCCGAGGTTGATTTGTTCCAATTTCATTGAAGGTATGCTTCCTTGTTCGT 457
||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 304 GGAAGCGGGACCCGAGATTGATTTGTTCCAATTTCATTGAAGGTATGCTTCCGTGTTCTT 363
Query 458 GTCCTGAGCTTGATCAGAAATTGGAAGACGCCGAGCTTCCGAAGAAGAAACGGGTTCGCG 517
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 364 GTCCTGAGCTTGATCAGAAATTGGAGGACGCTGAGCTTCCGAAGAAGAAACGGGTTCGCG 423
Query 518 GCGGGTCGGGCGTGGCTCGATGTCAGGTTCCGGATTGTGAAGCGGATATTAGCGAGCTCA 577
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GCGGGTCGGGGGTGGCTCGATGTCAGGTTCCGGATTGTGAAGCGGATATTAGCGAGCTCA 483
Query 578 AAGGGTACCATAAGAGGCATAGGGTTTGTCTCCGTTGCGCTACCGCCAGCTTTGTTGTGC 637
|||||||||||||||||||||||||||||||||| || |||| |||||||| ||||| |
Sbjct 484 AAGGGTACCATAAGAGGCATAGGGTTTGTCTCCGGTGTGCTAACGCCAGCTCCGTTGTCC 543
Query 638 TTGATGGAGAGAATAAGAGATACTGTCAACAGTGTGGAAAGTTTCAT-TTGCTCCCGGAC 696
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 544 TTGATGGAGAGAATAAGAGATACTGTCAACAGTGTGGAAAGTTTCATGTT-CTCCCGGAC 602
Query 697 TTTGATGAAGGAAAACGCAGCTGTCGGAGAAAGCTAGAGCGTCACAACAACAGACGGAAA 756
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TTTGATGAGGGAAAACGCAGCTGTCGGAGAAAGCTAGAGCGTCACAACAACAGACGGAAA 662
Query 757 AGGAAACCTGTAGATAAAGGAGGTGTTGCTGCAGAACAACAGCAAGTGCTTTCACAGAAT 816
||||||||||||||||||||||| ||||||||| |||||||||||||||| || ||||||
Sbjct 663 AGGAAACCTGTAGATAAAGGAGGCGTTGCTGCAAAACAACAGCAAGTGCTATCTCAGAAT 722
Query 817 GATAACAGCGTCATTGATGTTGAGGATGGAAAAGAT-ATCACATGCTCTAGTGACCAGAG 875
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 723 GATAACAGCGTCATTGATGTTGAGGATGGAAAAGATAAT-ACATGCTCTAGTGACCAGAG 781
Query 876 AGCTGAAGAAGAGCCTTCATTGATTTTTGAAGATCGGCATATTACCACTCAGGGTTCTGT 935
||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 782 AGCAGAACAAGAGCCTTCACTGATTTTTGAAGATCGGCATATTCCCACTCAGGGTTCTGT 841
Query 936 ACCTTTTACCCGAAGCATCAACGCAGACAACTTTGTCTCTGTTACAGGTTCGGGTGAAGC 995
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 842 ACCTTTTACCCAAAGCATCAACGCAGACAACTTTGTCTCTGTTACAGGTTCAGGTGAAGC 901
Query 996 TCAACCAGATGAAGGAATGAATGACACAAAATTTGAACGTTCACCTTCTAATGGCGACAA 1055
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 902 TCAACCAGATGAAGGAATGAATGACACAAAATTTGAACGTTCACCTTCCAATGGCGACAA 961
Query 1056 CAAAAGTGCTTACTCAACTGTGTGTCCAACTGGTCGGATCTCTTTTAAGCTCTACGATTG 1115
||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 962 CAAAAGTGCTTACTCAACTGTTTGCCCAACTGGTCGGATCTCTTTCAAGCTCTACGATTG 1021
Query 1116 GAATCCAGCGGAGTTCCCACGGAGACTACGTCATCAAATATTTCAATGGTTGGCCAACAT 1175
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1022 GAATCCAGCGGAGTTCCCACGGAGACTACGTCATCAAATATTCCAATGGTTGGCCAACAT 1081
Query 1176 GCCTGTTGAGCTGGAGGGCTATATCCGCCCAGGATGTACAATTTTGACTGTCTTTATAGC 1235
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 1082 GCCTGTTGAGCTGGAGGGCTATATCCGTCCTGGATGTACAATTTTGACAGTCTTTATAGC 1141
Query 1236 AATGCCAGAGATTATGTGGGCGAAGTTATCTAAAGATCCTGTGGCATATCTGGATGAATT 1295
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1142 AATGCCAGAGATTATGTGGGCGAAGTTGTCTAAAGATCCTGTGGCATATCTGGATGAATT 1201
Query 1296 TATTCTTAAACCTGGAAAGATGCTGTTTGGAAGAGGCTCGATGACTGTCTATTTGAACAA 1355
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1202 TATTCTTAAACCTGGAAAGATGCTATTTGGAAGAGGCTCGATGACAGTCTATTTGAACAA 1261
Query 1356 CATGATTTTCCGTCTTATTAAAGGTGGAACAACTTTAAAGAGAGTCGATGTAAAATTAGA 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 CATGATTTTCCGTCTTATTAAAGGTGGAACAACTTTAAAGAGAGTCGATGTAAAATTAGA 1321
Query 1416 GTCGCCGAAACTTCAGTTTGTGTATCCTACATGTTTTGAAGCTGGAAAACCAATTGAACT 1475
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 GTCGCCAAAACTTCAGTTTGTGTATCCTACATGTTTTGAAGCTGGAAAACCAATTGAACT 1381
Query 1476 CGTTGTATGTGGACAAAACCTTCTGCAACCTAAATGCCGGTTTCTCGTGTCTTTTTCTGG 1535
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1382 CGTTGTTTGTGGACAAAACCTTCTGCAACCCAAATGCCGGTTTCTCGTGTCTTTTTCTGG 1441
Query 1536 GAAGTACTTGCCACATAACTATTCTGTTGTACCTGCACCGGACCAGGATGGGAAGCGTTC 1595
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1442 GAAGTACTTACCACATAACTATTCTGTTGTTCCTGCACCGGACCAGGATGGGAAGCGTTC 1501
Query 1596 TTGTAATAACAAGTTCTACAAGATCAATATTGTGAATTCTGACCCTAGTCTCTTTGGCCC 1655
||||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 1502 TTGTATTAACAAGTTCTATAAGATCAATATTGTGAATTCTGACCCAAATCTCTTTGGCCC 1561
Query 1656 TGCCTTTGTCGAGGTTGAAAATGAATCTGGCCTATCAAATTTCATACCTCTAATTATTGG 1715
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1562 TGCCTTTGTCGAGGTTGAAAATGAATCTGGTCTATCAAATTTCATACCTCTAATTATTGG 1621
Query 1716 AGATGCAGCTGTTTGTTCCGAAATGAAACTAATAGAGCAGAAGTTCAATGCTACACTCTT 1775
||||| |||| | ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 AGATGAAGCTATATGTTCAGAAATGAAACTAATAGAGCAGAAGTTCAATGCTACACTCTT 1681
Query 1776 TCCAGAGGGACAAGAAGTTACTGCTTGCTCTTCTTTGACTTGCTGTTGCAGGGATTTTGG 1835
|||||| | ||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1682 TCCAGAAGAACAAGGAGTTACCGCTTGCTCTTCTTTGACTTGCTGTTGCAGGGATTTTGG 1741
Query 1836 GGAGAGACAGAGCACCTTTAGTGGCCTCTTGTTAGATATTGCATGGTCGGTGAAGGTACC 1895
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 1742 GGAGAGACAGAGCACCTTTAGTGGCCTCTTGTTAGATATCGCATGGTCAGTGAAGGTGCC 1801
Query 1896 CTCTGCAGAACGCACTGAGCAACCTGTGAACCGATGTCAGATAAAAAGATACAACAGAGT 1955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 CTCTGCAGAACGCACTGAGCAACCTGTGAACCGATGTCAGATAAAAAGATACAACAGAGT 1861
Query 1956 GTTGAATTATCTGATACAGAATAACTCAGCGTCGATCTTAGGAAACGTACTGCACAATTT 2015
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
Sbjct 1862 GTTGAATTATCTGATACAGAATAACTCAGCGTCAATCTTAGGAAGCGTACTGCACAATCT 1921
Query 2016 GGAAACTTTGGTGAAGAAAATGGAGCCAGACAGTCTTGTTCACTGTACCTGTGACTGCGA 2075
||||||||||||||| ||||||||||||||||| || |||| |||||||||||||||||
Sbjct 1922 GGAAACTTTGGTGAAAAAAATGGAGCCAGACAGCCTAATTCATTGTACCTGTGACTGCGA 1981
Query 2076 CGTGAGGCTTCTACATGAAAATATGGATTTGGCGAGTGATATTCACAGAAAGCATCAAAG 2135
|||||||||||||||||||||||||||||||| ||||| |||||| || |||||||||
Sbjct 1982 TGTGAGGCTTCTACATGAAAATATGGATTTGGCTAGTGACCTTCACATAAGGCATCAAAG 2041
Query 2136 CCCTATAGAGTCAAAGGTGAATCC------T---C--C-TTCGTCAGGTTGCTGTTGTGT 2183
|| || |||||||||||||||||| | | | ||| |||||||||||||||||
Sbjct 2042 CCATAAAGAGTCAAAGGTGAATCCAGGGAATGTTCTTCCTTCTTCAGGTTGCTGTTGTGT 2101
Query 2184 GAGTAGT--C-AGAAGGACATACCATCAAGAATATTAAACTTCAATAAGGATCCTGAAGC 2240
||||||| | | ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2102 GAGTAGTTTCCAAAAGGACATACCATCAAGAATATTAAACTTCAATCAGGATCCTGAAGC 2161
Query 2241 AGGATTAGATTGTAAAGAGAGAATACAGGCAGACTGTTCACCAGATAGCGGCGGAAAAGA 2300
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 2162 AGGATTAGATTGTAAAGAGAGAATACAGGCGGACTGTTCACCAGATAGTGGCGGAAAAGA 2221
Query 2301 GACTGATCCTCTGT-TAAACAAAGAGGTTGTCATGAACGTAAATGACATAGGAGACTGGC 2359
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2222 GACTGATCCTCT-TATAAACAAAGAGGTTGTCATGAACGTAAATGACATAGGAGACTGGC 2280
Query 2360 CAAGGAAG---TCGTGTATAAAAACGCACTCAGCTTTAGCATTCAGGTCCCGTCAAACTA 2416
|||||||| || ||||||| ||| ||||||||| || |||||||||||||||||||
Sbjct 2281 CAAGGAAGAAGTCCTGTATAACAACACACTCAGCTCTAACATTCAGGTCCCGTCAAACCG 2340
Query 2417 TGTTCTTAATCGCTACGTTCGCTGTCTGTTTTGCTGTCTGTGCGGTTCTCTACCATCCAA 2476
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 2341 TGTTCTTAATCGCTACGTTTGCTGTCTGTTTTGCGGTCTGTGCGGTTCTCTACCATCCAA 2400
Query 2477 ACAAGGTCACACAGCTTGCAGTGGCAATCCGAATGAGATTG 2517
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2401 ACAAGGTCACACAGCTTGCAGTGGCAATCCGAATGAGATTG 2441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105205256690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5