BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18840.1
Length=1830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488771 jgi|Araly1|488771|fgenesh2_kg.6__1905__AT5G18840.1 2412 0.0
> Ahg488771 jgi|Araly1|488771|fgenesh2_kg.6__1905__AT5G18840.1
Length=1653
Score = 2412 bits (1306), Expect = 0.0
Identities = 1446/1514 (96%), Gaps = 7/1514 (0%)
Strand=Plus/Plus
Query 15 CTCTCTCTTTCCTTGCAAATTTTCAGCTCTCAAAGAGTTAAGAGTTagagagagagagGA 74
|||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| ||
Sbjct 1 CTCTCTCTTTCCTTGCAAATTTTCTGCTCTCAAAGAGTAAAGAGTTGGAGAGAGAGAAGA 60
Query 75 TGGCCATTAGGGAAATCAAAGATGTAGAGAGGGGTGAAATAGTGA-ATAAGGTAGA--A- 130
|||| ||||||||||||||||| | |||||||||||| ||||| | |||||||||| |
Sbjct 61 TGGCAATTAGGGAAATCAAAGACGAAGAGAGGGGTGAGATAGT-ACATAAGGTAGAGGAG 119
Query 131 GATCTTGGGAAACCATTTTTGACTCATGAAGATGATGAAAAAGAGAGTGAGAATAATGAA 190
| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 GGTCTAGGGAAACCATTTTTGACTCATCAAGATGATGAAAAAGAGAGTGAGAATAATGAA 179
Query 191 TCATATTTGATGGTTCTCTTCAGTACTTTTGTTGCTGTCTGTGGCTCCTTTGAGTTTGGC 250
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 180 TCCTATTTGATGGTTCTCTTCAGCACTTTTGTTGCTGTCTGTGGCTCCTTTGAGTTTGGC 239
Query 251 TCTTGTGTTGGATACTCAGCGCCTACTCAGTCATCTATAAGACAAGATCTCAATCTCTCC 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCTTGTGTTGGATACTCAGCGCCTACTCAGTCATCTATAAGACAAGATCTCAATCTCTCC 299
Query 311 CTTGCAGAGTTCTCCATGTTTGGATCCATCTTAACTATCGGTGCAATGCTTGGTGCTGTT 370
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 CTTGCAGAGTTCTCAATGTTTGGATCCATCTTAACAATCGGTGCAATGCTTGGTGCTGTT 359
Query 371 ATGAGTGGGAAAATTTCAGATTTCTCCGGCCGAAAAGGGGCAATGAGGACATCAGCTTGC 430
||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||
Sbjct 360 ATGAGTGGGAAAATTTCAGATTTTTCCGGCCGAAAAGGGGCTATGAGAACGTCAGCTTGC 419
Query 431 TTCTGCATTACAGGTTGGCTCGCTGTCTTCTTCACCAAGGGGGCATTGTTACTTGATGTA 490
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 420 TTCTGCATTACAGGTTGGCTCGCTGTCTTCTTCTCCAAGGGTGCATTGTTACTTGATGTA 479
Query 491 GGAAGGTTCTTTACAGGATATGGAATTGGAGTTTTTTCTTATGTGGTCCCTGTGTACATT 550
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGAAGGTTCTTTACAGGATTTGGAATTGGAGTTTTTTCTTATGTGGTCCCTGTGTACATT 539
Query 551 GCTGAGATATCTCCCAAGAATCTCCGAGGTGGACTCACAACACTGAACCAACTCATGATT 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCTGAGATATCTCCCAAGAATCTCCGAGGTGGACTCACAACACTGAACCAACTCATGATT 599
Query 611 GTGATCGGCTCATCGGTTTCTTTCTTGATCGGATCTCTCATTTCTTGGAAAACTCTTGCC 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTGATCGGCTCATCGGTTTCTTTCTTGATCGGATCTCTCATTTCTTGGAAAACTCTTGCC 659
Query 671 CTAACCGGACTTGCTCCCTGCATTGTTTTGCTCTTTGGCTTGTGCTTCATACCCGAATCT 730
|||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct 660 CTAACCGGACTTGCTCCCTGCATTGTTTTGTTCTTTGGTTTGTGCTTCATACCTGAATCT 719
Query 731 CCTCGATGGCTGGCAAAAGCAGGCCATGAGAAAGAGTTTCGCGTAGCCCTGCAAAAGCTG 790
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 720 CCTCGATGGCTGGCAAAAGCAGGCCGTGAGAAAGAGTTTCGCTTAGCCCTGCAAAAGCTA 779
Query 791 CGAGGAAAAGATGCAGATATCACAAATGAAGCAGACGGTATTCAAGTCTCGATTCAAGCT 850
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 780 CGAGGAAAAGATGCAGATATCACAAATGAAGCAGAAGGTATTCAAGTCTCGATTCAAGCT 839
Query 851 CTAGAGATTCTTCCAAAAGCAAGAATCCAAGACCTTGTGTCCAAGAAATATGGTCGATCT 910
||||||||||| ||| |||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct 840 CTAGAGATTCTCCCACAAGCAAGAATTCAAGATCTTGTGTCCAAGAAATATGCTCGATCT 899
Query 911 GTCATCATTGGTGTTTCCCTGATGGTATTCCAACAGTTTGTTGGAATCAATGGGATCGGA 970
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTCATTATTGGTGTTTCCCTGATGGTATTCCAACAGTTTGTTGGAATCAATGGGATCGGA 959
Query 971 TTCTACGCAAGTGAAACGTTTGTAAAAGCCGGATTTACCTCTGGGAAACTAGGAACAATC 1030
||||||||||| |||||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct 960 TTCTACGCAAGCGAAACGTTTGTAAAAGCCGGATTTTCGTCTGGGAAACTCGGAACAATC 1019
Query 1031 GCTATCGCTTGTGTTCAGGTGCCAATAACTGTTCTTGGAACAATCTTGATAGATAAATCT 1090
|| ||||||||| ||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 1020 GCAATCGCTTGTATTCAGGTTCCCATAACTGTTCTTGGGACAATCTTGATAGATAAATCT 1079
Query 1091 GGACGAAGGCCACTAATTATGATTTCAGCTGGTGGTATCTTCTTGGGATGCATACTCACA 1150
|||||||| |||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 1080 GGACGAAGACCACTAATTATGATTTCAGCTGGTGGTATCTTCTTGGGGTGTATTCTCACA 1139
Query 1151 GGCACATCTTTCTTACTCAAGGGACAGAGCTTGTTGCTTGAATGGGTCCCTTCCTTAGCC 1210
|||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct 1140 GGCACATCTTTCTTACTCAAGGGACAAAGCTTGTTGCTTGAATGGGTACCTACCTTAGCA 1199
Query 1211 GTTGGAGGTGTACTTATCTATGTAGCTGCTTTCTCCATCGGAATGGGACCTGTTCCTTGG 1270
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1200 GTTGGAGGTGTACTTATCTATGTAGCTGCTTTCTCTATCGGAATGGGACCTGTTCCTTGG 1259
Query 1271 GTGATAATGTCTGAGATATTTCCGATAAACGTAAAGGGAATCGCAGGAAGCTTAGTGGTA 1330
|||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 1260 GTGATAATGTCTGAGATATTTCCGATAAACATTAAGGGGATCGCAGGAAGCTTAGTGGTA 1319
Query 1331 CTAGTGAATTGGTCTGGTGCTTGGGCTGTTTCTTACACTTTCAACTTCCTCATGAGCTGG 1390
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CTAGTGAATTGGTCCGGTGCTTGGGCTGTTTCTTACACTTTCAACTTCCTCATGAGCTGG 1379
Query 1391 AGCTCTCCAGGTACATTCTAT-TTGTACTCGGCTTTTGCAGCTGCGACGATAATATTTGT 1449
||||||||||||||||||||| || ||||| ||||||||||| || |||||||| |||||
Sbjct 1380 AGCTCTCCAGGTACATTCTATATT-TACTCTGCTTTTGCAGCCGCAACGATAATCTTTGT 1438
Query 1450 GGCGAAGATGGTGCCAGAGACGAAAGGGAAGACACTGGAAGAGATCCAAGCTTGTATTCG 1509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GGCGAAGATGGTGCCAGAGACGAAAGGGAAGACACTGGAAGAGATCCAAGCTTGTATTCG 1498
Query 1510 AAGAGAAACATAAG 1523
||||||||||||||
Sbjct 1499 AAGAGAAACATAAG 1512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68714801980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5