BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18850.1 Length=667 Score E Sequences producing significant alignments: (Bits) Value Ahg488772 jgi|Araly1|488772|fgenesh2_kg.6__1906__AT5G18850.1 424 6e-118 > Ahg488772 jgi|Araly1|488772|fgenesh2_kg.6__1906__AT5G18850.1 Length=468 Score = 424 bits (229), Expect = 6e-118 Identities = 285/313 (91%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 49 AATGGCGTCTCCATCATCGTCACCGACAACAAGAATCTGGTTCCGTACAGTGATCTTAAT 108 |||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| | || Sbjct 1 AATGGCATCTCCATCATCGTCACCGAAAACGAGAATCTGGTTCCGTACAGTGATCCTGAT 60 Query 109 CGCTTTAATGGTGGTTCTCTTCTACGTTGGCCGTCCTCTCTACTGGAAGATCTCTGCCAC 168 | |||| ||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| Sbjct 61 CTCTTTGATGGTGGTTCTCTTCTATGTTGGTCGTCCTCTTTACTGGAAGATCTCCGCCAC 120 Query 169 AATCCACGACATCCGCCACAACAAACAATCCGTCAGAGAAGGTATTTCTCAGATCGTACA 228 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 121 AATCCACGATATCCGCCACAACAAACAATCGGTCAGAGAAGGTATTTCTCAGATCGTACA 180 Query 229 CGAAGCGCAGAGATCAGTGGGATGGTATCACGACGAATCGGATTCAGGGTTCCGAGAAGG 288 ||||||||||||||| || |||||||||||||| || || |||||||||||||| ||||| Sbjct 181 CGAAGCGCAGAGATCGGTCGGATGGTATCACGAAGAGTCAGATTCAGGGTTCCGGGAAGG 240 Query 289 TCACAACAAGAAATCGGGAATCGCCGTCTCTCGGAGGCTTCTTTTCGCCGGAGATCAGTG 348 |||| |||||||||| ||| ||||||| ||| |||||||||| |||| ||||||| ||| Sbjct 241 TCACCACAAGAAATCAGGAGTCGCCGTATCTAGGAGGCTTCTCTTCGTTGGAGATCTGTG 300 Query 349 AGAAATTTTCTCC 361 ||||||||||||| Sbjct 301 AGAAATTTTCTCC 313 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24474912714 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5