BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18850.1
Length=667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488772 jgi|Araly1|488772|fgenesh2_kg.6__1906__AT5G18850.1 424 6e-118
> Ahg488772 jgi|Araly1|488772|fgenesh2_kg.6__1906__AT5G18850.1
Length=468
Score = 424 bits (229), Expect = 6e-118
Identities = 285/313 (91%), Gaps = 0/313 (0%)
Strand=Plus/Plus
Query 49 AATGGCGTCTCCATCATCGTCACCGACAACAAGAATCTGGTTCCGTACAGTGATCTTAAT 108
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| | ||
Sbjct 1 AATGGCATCTCCATCATCGTCACCGAAAACGAGAATCTGGTTCCGTACAGTGATCCTGAT 60
Query 109 CGCTTTAATGGTGGTTCTCTTCTACGTTGGCCGTCCTCTCTACTGGAAGATCTCTGCCAC 168
| |||| ||||||||||||||||| ||||| |||||||| |||||||||||||| |||||
Sbjct 61 CTCTTTGATGGTGGTTCTCTTCTATGTTGGTCGTCCTCTTTACTGGAAGATCTCCGCCAC 120
Query 169 AATCCACGACATCCGCCACAACAAACAATCCGTCAGAGAAGGTATTTCTCAGATCGTACA 228
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 AATCCACGATATCCGCCACAACAAACAATCGGTCAGAGAAGGTATTTCTCAGATCGTACA 180
Query 229 CGAAGCGCAGAGATCAGTGGGATGGTATCACGACGAATCGGATTCAGGGTTCCGAGAAGG 288
||||||||||||||| || |||||||||||||| || || |||||||||||||| |||||
Sbjct 181 CGAAGCGCAGAGATCGGTCGGATGGTATCACGAAGAGTCAGATTCAGGGTTCCGGGAAGG 240
Query 289 TCACAACAAGAAATCGGGAATCGCCGTCTCTCGGAGGCTTCTTTTCGCCGGAGATCAGTG 348
|||| |||||||||| ||| ||||||| ||| |||||||||| |||| ||||||| |||
Sbjct 241 TCACCACAAGAAATCAGGAGTCGCCGTATCTAGGAGGCTTCTCTTCGTTGGAGATCTGTG 300
Query 349 AGAAATTTTCTCC 361
|||||||||||||
Sbjct 301 AGAAATTTTCTCC 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24474912714
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5