BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18860.1
Length=3250
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893806 jgi|Araly1|893806|Al_scaffold_0006_1802 4119 0.0
Ahg326285 jgi|Araly1|326285|fgenesh1_pm.C_scaffold_6001505 1659 0.0
Ahg488773 jgi|Araly1|488773|fgenesh2_kg.6__1907__AT5G18870.1 130 7e-29
> Ahg893806 jgi|Araly1|893806|Al_scaffold_0006_1802
Length=2676
Score = 4119 bits (2230), Expect = 0.0
Identities = 2544/2692 (95%), Gaps = 36/2692 (1%)
Strand=Plus/Plus
Query 347 GATGTTGACGAGCCCTACTTTGAAGAGTTTATGGTTC---TT-------GT--TCACTAT 394
||||||||||||||| ||||||||||||||||||||| || || |||||||
Sbjct 3 GATGTTGACGAGCCCAACTTTGAAGAGTTTATGGTTCTTGTTCACCACAGTAGTCACTAT 62
Query 395 TCTTGGACTCTTAGGACAAAACCTCCCTTGTGTTCTGTCTAGTTCACACCGTATTCTAGT 454
||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||||
Sbjct 63 TCTTGGAATCTTAGGACAAAACCTCCCTTGTGTTTTGTCTACTCCACACCGTATTCTAGT 122
Query 455 GGATACAGATGTCGACACAGACGATTTATTCGCTATACTCTACCTCCTGAAACTCAACAA 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GGATACAGATGTCGACACAGACGATTTATTCGCTATACTCTACCTCCTGAAACTCAACAA 182
Query 515 ATCAGAATTTGATCTAGTCGGGATTACACTGAGTGCAAATGCATGGACAAACGCAGGACA 574
||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 183 ATCAGAATTCGATCTAGTCGGGATTACATTGAGTGCGAATGCATGGACAAACGCAGGACA 242
Query 575 CGCCGTGAATCAAGTGTATGATTTATTGCACATGATGGATCGTGACGATATCCCCGTTGG 634
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 243 CGCCGTGAATCAAGTGTATGATTTATTGCACATGATGGGTCGTGACGATATCCCCGTTGG 302
Query 635 TGTCGGCGGCGAAGGTGGGATTAGCGACGACGGTACTATTCACTCTGACGTCGGTGGTTA 694
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 303 TGTCGGCGGCGAAGGTGGGATTCGCGACGACGGTACTATTCACTCTGACGTCGGTGGTTA 362
Query 695 TTTTCCCATCATCGAACAGGGGATGACAACAACAGGGGAATGTAGATACAGACAAGCCAT 754
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 363 TTTTCCGATCATCGAACAGGGGATGACGACAACAGGAGAATGTAGATACAGACAAGCCAT 422
Query 755 TCCTAAAGGTCTTGGAGGCCTTCTCGACATAGACTCCAATTATGGATTTCGTAAACAGTT 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TCCTAAAGGTCTTGGAGGCCTTCTCGACATAGACTCCAATTATGGATTTCGTAAACAGTT 482
Query 815 TCTTCCTCAGGGGAACAGAAGATACACTCCTCTCCAACAACCAACGGCACAAAAAGTGAT 874
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 483 TCTTCCTCAGGGGAACAGAAGATACACTCCTCTCCGGCAACCAACGGCACAAAAAGTGAT 542
Query 875 CGTCGACAAAATTTCCGAAGGTCCAACCACCGTAATCCTTCTCGGATCCCACACCAATTT 934
|| ||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 543 CGCCGACAAAATTTCCGAAGGTCCAACCACTGTGATCCTGATCGGATCCCACACCAATTT 602
Query 935 TGCACTCTTCTTGATGTCAAATCCTCACTTGAAACACAACATCCAACACATCTACATCAT 994
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 603 CGCACTTTTCTTGATGTCAAACCCTCACTTGAAACACAACATCCAACACATCTACATCAT 662
Query 995 GGGCGGTGGTGTCCGATCACAAAACCCCACCGGCTGTTGTCCGGCGAACTCCACGG-TGG 1053
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 663 GGGCGGTGGTGTCCGGTCACAAAACCCCACCGGCTGCTGTCCGGCGAACTCCACTGCTG- 721
Query 1054 CGGAATGTCAACCACGACAGTGCGGGAACCGTGGAAACTTGTTCACAGATTATACAAGTA 1113
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 722 CGGAATGTCAACCTCGACAGTGTGGGAACCGTGGAAACTTGTTCACAGATTATACAAGTA 781
Query 1114 ATCCTTACTCTGAATTCAACATCTTCGCTGATCCTTTCGCTGCTTACCAGGTGTTTCATT 1173
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 782 ATCCTTACGCTGAATTCAACATCTTCGCTGATCCTTTCGCTTCTTACCAGGTGTTTCATT 841
Query 1174 CAGGTGTTCCAGTGACTCTGGTTCCTCTAGATGCAACCAACACTATTCCGATCAACCAGA 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 CAGGTGTTCCAGTGACTCTGGTTCCTCTAGATGCAACCAACACTATTCCGATCAACCAGA 901
Query 1234 AGTTCTTTGAGACATTCGAGAATAATTACCAGAGAACATACGAAGCTCAATACGTTTTCT 1293
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 902 AGTTCTTCGAGACATTCGAGAAGAA---CCAGAGAACATACGAAGCTCAATACGTTTTCT 958
Query 1294 TATCTCTGAAAATCGCCAGAGACACTTGGTTCGACGATGAATTCTACAAGAGCTACTTCA 1353
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 959 TATCTCTGAAAATCGCCAGAGACACTTGGTTCGACGATGAATTCTATAAGAGCTACTTCA 1018
Query 1354 TGTGGGATTCTTTCACGGCTGGTGTTGCAGTCTCAATCATGAGAAACTCTGCTAATAAGA 1413
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1019 TGTGGGATTCTTTCACGGCTGGTGTTGCAGTCTCAATTATGAGAAACTCTGGTAA----- 1073
Query 1414 ACAACAAAAATGGTGAGAACGATTTCGCGGAGATGGAGTATATGAACATAACCGTTGTTA 1473
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 -CAACAAAAATGGTGAGAACGATTTCGCGGAGATGGAGTATATGAACATAACCGTTGTTA 1132
Query 1474 CTTCAAACAAACCTTATGGAAGATCAGATGGCTCAAATCCATTCTTTGATAATAGAAGAA 1533
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1133 CTTCAAACAAACCTTATGGAAGATCCGACGGCTCAAATCCATTCTTTGATAATAGAAGAA 1192
Query 1534 CTCCAAAATTTAACCTAGCCCTTGGAGGAGTTCACAGTGGTCATGTTCAGACGGGTTTGC 1593
||||||| ||||||||| || ||||||||||||| |||||||||||||||| ||||||||
Sbjct 1193 CTCCAAAGTTTAACCTAACCGTTGGAGGAGTTCATAGTGGTCATGTTCAGATGGGTTTGC 1252
Query 1594 GAGATCCAACTTGCTTACCGAAAAGCGGAATAGGAAGAGGAAAGTGTAAGGATGGTTACA 1653
|||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1253 GAGATCCAGCTTGCTTACCAAAAAGCGGAAAAGGAAGAGGAAAGTGTAAGGATGGTTACA 1312
Query 1654 CACAAGAGATCTCTGGTTCTGATTCTGTTCGTGTTCTTGTTGCGACACGAGCTAAACCCA 1713
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1313 CACAAGAGATCTCTGGACCTGATTCTGTTCGTGTTCTTGTCGCGACACGAGCTAAACCCA 1372
Query 1714 ACATAAACATCAAAAGTAAACTTGACAGAGAATTCTATGTTGATTTCCTGGAAGTTTTGA 1773
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1373 ACATAAACATCAAAAGTAAACTTGACAGAGAGTTCTATGTTGATTTCCTGGAAGTTTTGA 1432
Query 1774 ATAGACCTGAAGAAACAGGGAGATTTAACTTTTCATCTCAGTTTCCATACTACAAAGAAG 1833
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 ATAGACCTGAAGAAACGGGGAGATTTAACTTTTCATCTCAGTTTCCATACTACAAAGAAG 1492
Query 1834 AATTGTTTAGACCAGATCTTAGCAAAACACGTCCCGGAAAGCCTGTTGTTTTCGATATGG 1893
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1493 AACTGTTTAGACCAGATCTTAGCAAAACACGTCTCGGAAAGCCTGTTGTTTTCGATATGG 1552
Query 1894 ACATGAGCGCCGGAGATTTCCTCTCTCTCTTCTACCTCCTCAAAGTTCCGGTGGATA-AA 1952
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| | ||
Sbjct 1553 ACATGAGCGCCGGAGATTTCCTTTCTCTCTTCTACCTCCTCAAAGTTCCAGTGGA-AGAA 1611
Query 1953 ATCGATTTGAAGGCTATTATTGTGAGCCCAACCGGTTGGGCTAATGCAGCAACAATAGAC 2012
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1612 ATCGATTTGAAGGCTATTATTGTGAGCCCAACTGGTTGGGCTAATGCAGCAACAATCGAC 1671
Query 2013 GTGGTCTATGATCTGCTTCATATGATGGGTCGGGACGATATTCCAGTGGG-CTTGGGAGA 2071
|||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||
Sbjct 1672 GTGGTCTATGATCTGCTTCATATGATGGGTCGGGACGACATTCCAGTCGGTCT-GGGAGA 1730
Query 2072 CATGTTGGCATTGAACCAATCCGACCCGATTTTTCCACCGGTTGGAGGTTGCAAGTACGT 2131
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1731 CATGTTGGCATTGAACCAATCCGACCCGATTTTCCCACCGGTTGGAGGTTGCAAATACGT 1790
Query 2132 CAAGGCTATTCCACGAGGCTGTGGCGGATTTCTGGATTCCGACACTCTCTACGGTCTTGC 2191
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 CAAGGCTGTTCCACGAGGCTGTGGCGGATTTCTGGATTCCGACACTCTCTACGGTCTTGC 1850
Query 2192 TCGTGACCTTCCGAGAAGCCCTCGCAGATACACTGCAGAGAATTCAGT-GACACATGGAG 2250
||||||||||||||||||||| |||||||||||||||||||||||||| | || ||||||
Sbjct 1851 TCGTGACCTTCCGAGAAGCCCACGCAGATACACTGCAGAGAATTCAGTAG-CAGATGGAG 1909
Query 2251 CTCCCAGGGACACTGATAGGCCTGAACTCCGACAACCTCTGGCTATTGAAGTTTGGCAAA 2310
|||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1910 CTCCGAGGGACACTGATCGGCCTGAACTCCGACAACCTCTGGCTCTTGAAGTTTGGCAAA 1969
Query 2311 ATCTGACCAAATCTGGTAATGGAGTGTCTAAGATCACTGTACTAACCAATGGACCGTTAA 2370
|||| |||||||||||||| ||||||||||| |||||||||||||||| ||||||||| |
Sbjct 1970 ATCTAACCAAATCTGGTAACGGAGTGTCTAATATCACTGTACTAACCAGTGGACCGTTGA 2029
Query 2371 CTAACTTAGCCAAGATTATCTCATCAGATAAAAAATCATCCTCACTAATCAAGGAAGTTT 2430
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2030 CTAGCTTAGCCAAGATTATCTCATCAGATAAAAAATCATCCTCAATAATCAAGGAAGTTT 2089
Query 2431 ACATCGTGGGTGGACATATAAACCGTGAGAAATCAGACAAAGGGAACATTTTCACGATTC 2490
|||||||||||||||||||||||| ||||||||||||||||||||| || |||||| |||
Sbjct 2090 ACATCGTGGGTGGACATATAAACCCTGAGAAATCAGACAAAGGGAATATATTCACGGTTC 2149
Query 2491 CTTCAAATGCATATGCTGAATTCAATATGTTTCTTGATCCTTTAGCAGCTAAGACCGTTC 2550
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 CTTCGAATGCATATGCTGAATTCAATATGTTTCTTGATCCTTTAGCAGCTAAGACCGTTC 2209
Query 2551 TTGAATCCGCTCTAAACATCACACTCGTCCCTCTAGCAACACAACACAAGTTGAGTTCTT 2610
||||||||| |||||||||||||||| ||||||||||||| |||| |||||| |||||
Sbjct 2210 TTGAATCCGGTCTAAACATCACACTCATCCCTCTAGCAACCCAACGCAAGTT---TTCTT 2266
Query 2611 TCCAAACAATGCTTGATAGACTCTATTCCTC-GACGAAAACACCAGAAGCTCGGTTTGTG 2669
||||| |||||||| |||||||| || |||| | |||||||||| |||||||||||||||
Sbjct 2267 TCCAACCAATGCTTAATAGACTCAATCCCTCAG-CGAAAACACCCGAAGCTCGGTTTGTG 2325
Query 2670 AAACGGTTGCTTGTAAGATTGCAAGCTCTTCATCAGAAACACAGGAGATACACGCACATC 2729
| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2326 AGACGGCTGCTTGCAAGATTGCAAGCTCTTCATCAGAAACACAGGAGATACACGCACATG 2385
Query 2730 GACATGTTCTTAGGGGAAGTTCTTGGAGCAGTTCTT-TTGGGAGGCGATGACGCTTCACT 2788
|||||||||||||||||| || ||||||||||| || |||||||||||| |||||||| |
Sbjct 2386 GACATGTTCTTAGGGGAAATTATTGGAGCAGTT-TTCTTGGGAGGCGATCACGCTTCATT 2444
Query 2789 GAAGCCGAAAATGAGAGCCGAGCACATAAAAGTGATCGCGGAAGGGGATGAATCGAGAGA 2848
|||||||||| ||||||| |||||| ||||||||||||| |||||||| ||||||| |||
Sbjct 2445 GAAGCCGAAACTGAGAGCTGAGCACTTAAAAGTGATCGCTGAAGGGGACGAATCGATAGA 2504
Query 2849 TGGTAAGATATTGATCGATAAACTGCGCGGCAAACAAATAAAGATACTCGAAAGAGTAGA 2908
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2505 TGGTAAGATATTGATTGATAAACTGCGCGGCAAACAAATAAAGATACTCGAAATAGTAGA 2564
Query 2909 CCTAATAAGCATCTCTGAGAGTTTTGCTTCTAGACTCGATGATAAGAAACAATCTGCAGT 2968
|| | |||| |||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 2565 TCTGAGAAGCTTCTCTGAGAGTTTTACTTCTAGACTCGATGATAAGAAACAATCAGCAGT 2624
Query 2969 AATAGGAAGCTTTGAAGAACAAAAGAAGATATGGAGCACACCACCAAGCTGA 3020
|||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 2625 CATAGGAAGCTTTGAAGAACAAAAGAAAAAATGGAGCACACCACCAAGCTGA 2676
> Ahg326285 jgi|Araly1|326285|fgenesh1_pm.C_scaffold_6001505
Length=1623
Score = 1659 bits (898), Expect = 0.0
Identities = 1395/1627 (86%), Gaps = 65/1627 (4%)
Strand=Plus/Plus
Query 1406 TAATAAGAACAACAA-AAATGGTGAGAACGATTTCGCGGAGATGGAGTATATGAACATAA 1464
||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 21 TAATAAGAACAACAATAAA-GGTGAGAATGATTTCGCGGAGATGGAGTATATGAACATAA 79
Query 1465 CCGTTGTTACTTCAAACAAACCTTATGGAAGATCAGATGGCTCAAATCCATTCTTTGATA 1524
|| |||||||||||||| |||||||||||| | | || | ||||||||||||||| |||
Sbjct 80 CCATTGTTACTTCAAACGAACCTTATGGAATACCCGACAGTTCAAATCCATTCTTTTATA 139
Query 1525 ATAGAAGAACTCCAAAATTTAACCTAGCCCTTGGAGGAGTTCACAGTGGTCATGTTCAGA 1584
| | |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 140 AAAAAAGAACTCCAAAGTTTAACCTAACCCTTGGAGGAGTTCACAGTGGTCATGTTCAGA 199
Query 1585 CGGGTTTGCGAGATCCAACT-TGCTTACCGAAAAGCGGAATAGGAAGAGGAAAGTGTAAG 1643
||||||||| || |||| | ||| || ||| |||||| | || |||||| || |||
Sbjct 200 GGGGTTTGCGCGACCCAA-TCTGCATATCGAGAAGCGG---A--AA-AGGAAACTGCAAG 252
Query 1644 GATGGTTACACACAAGAGATC-TCTGGTTCTGATTCTGTTCGTGTTCTTGTTGCGACACG 1702
|||||||||||| |||||| | || || ||||||| |||||||| ||||| || |||||
Sbjct 253 GATGGTTACACAAAAGAGACCTTC-GGGCCTGATTCAGTTCGTGTACTTGTCGCAACACG 311
Query 1703 AGCTAAACCCAACATA-AACATCAAAAGTAAACTTGACAGAGAATTCTATGTTGA-TTTC 1760
||||||||| | || | ||| |||| ||| |||| || ||||| ||||||| || |||
Sbjct 312 AGCTAAACCGAGCA-AGAACTTCAACAGTGAACTGGATAGAGAGTTCTATGACGACTTT- 369
Query 1761 CTGGAAGTTTTGAATAGACCTGAAGAAACAGGGAGATTTAACTTTTCATCTCAGTTTCCA 1820
||||||||||||| || |||| |||||||||||| |||||||||||| |||||||||
Sbjct 370 TTGGAAGTTTTGAACAGGCCTGGAGAAACAGGGAGGTTTAACTTTTCAACTCAGTTTCTG 429
Query 1821 TACTACAAAGAAGAATTGTTTAGACCAGATCTTAGCAAAACAC-G-TC-CCGGAAAGCCT 1877
||||| | |||||||||||| | | || ||||||| || |||| | || |||||||||
Sbjct 430 TACTATAGAGAAGAATTGTTCATAGCAAATCTTAGTAACACACAGCTCGGAGGAAAGCCT 489
Query 1878 GTTGTTTTCGATATGGACATGAGCGCCGGAGATTTCCTCTCTCTCTTCTACCTCCTCAAA 1937
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 490 GTTATTTTCGATATGGACATGAGCGCCGGAGATTTCCTCTCTCTCTTCTATCTCCTTAAA 549
Query 1938 GTTCCGGTGGATAA-AATCGATTTGAAGGCTATTATTGTGAGCCCAACCGGTTGGGCTAA 1996
||||| ||||| || || ||||||||||| |||| ||||||||||| |||||||||||
Sbjct 550 GTTCCAGTGGA-AATTATAGATTTGAAGGCGGTTATCGTGAGCCCAACTGGTTGGGCTAA 608
Query 1997 TGCAGCAACAATAGACGTGGTCTATGATCTGCTTCATATGATGGGTCGGGACGATATTCC 2056
|||||| ||||| || |||||||| ||||| ||||||||||||| || || || |||||
Sbjct 609 TGCAGCGACAATTGATGTGGTCTACGATCTTTTTCATATGATGGGACGCGATGACATTCC 668
Query 2057 AG-T-GGGCTTGGGAGACATGTTGGCATTGAACCAATCCGACCCGATTTTTCCACCGGTT 2114
| | || | | ||||| ||||| || ||||||||||| || ||| ||||||| | | |
Sbjct 669 -GATCGGTC-TAGGAGATATGTTCGCCTTGAACCAATCTGAACCGGGTTTTCCATCTGCT 726
Query 2115 GGAGGTTGCAAGTACGTCAAGGCTATTCCACGAGGCTGTGGCGGATTTCTGGATTCCGAC 2174
|||| |||||||||| ||| || |||| | ||||||||| || ||||| |||||||||
Sbjct 727 GGAGACTGCAAGTACGCCAAAGCGGTTCCCCAAGGCTGTGGTGGTTTTCTTGATTCCGAC 786
Query 2175 ACTCTCTACGGTCTTGCTCGTGACCTTCCGAGAAGCCCTCGCAGATACACTGCAGAGAAT 2234
|||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct 787 ACTCTCTATGGTCTTGCTCGTGACCTCCCAAGAAGCCCTCGCAGAAACACTGCAGAGAAC 846
Query 2235 TCAGTGACACATGGAGCTCCCAGGGACACTGATAGGCCTGAACTCCGACAACCTCTGGCT 2294
|||||| || |||||||||| |||||||||||| || ||||| ||||||||||||||||
Sbjct 847 TCAGTGGCAAATGGAGCTCCGAGGGACACTGATCGGACTGAAATCCGACAACCTCTGGC- 905
Query 2295 A-TTGAAGTTTGGCAAAATCTGACCAAATCTGGTAATGGAGTGTCTAAGATCACTGTACT 2353
| |||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||
Sbjct 906 ACTTGAAGTTTGGCAAAATCTGACCAAATCTGTTAATGAAGTGTCAAAGATCACTGTACT 965
Query 2354 AACCAATGGACCGTTAACTAACTTAGCCAAGATTATCTCATCAGATAAAAAATCATCCTC 2413
||||||||||||| | | || ||| | ||| | || |||| | || ||
Sbjct 966 AACCAATGGACCG-T---TGAC-TAG-C----TTAGC-CA--AGAT------T-AT-CT- 1003
Query 2414 ACTAATCAAGGAAGTTTACATCGTGGGTGGACATATAAACCGTGAGAAATCAGACAAAGG 2473
| ||| | |||||||||||||| ||||||||||||| |||||| ||||| ||||||||
Sbjct 1004 -C--ATC-A-GAAGTTTACATCGTCGGTGGACATATAAGCCGTGAAAAATCTGACAAAGG 1058
Query 2474 GAACATTTTCACGA-TTCCTTCAAATGCATATGCTGAATTCAATATGTTTCTTGATCCTT 2532
|||| | ||||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1059 GAACGTATTCAC-AGTTCCTTCGAATGCATATGCTGAATTCAATATGTTTCTTGATCCTT 1117
Query 2533 TAGCAGCTAAGACCGTTCTTGAATCCGCTCTAAACATCACACTCGTCCCTCTAGCAACAC 2592
|||||||||||||| |||||||||| | ||||||||||| |||| ||||||||||||| |
Sbjct 1118 TAGCAGCTAAGACCATTCTTGAATCAGGTCTAAACATCATACTCATCCCTCTAGCAACCC 1177
Query 2593 AACACAAGTTGAGTTCTTTCCAAACAATGCTTGATAGACTCTATTCCTCGACGAAAACAC 2652
||| |||||| |||||| ||| |||||||| ||| ||||||||||||| |||||||||
Sbjct 1178 AACGCAAGTT---TTCTTTTCAACCAATGCTTAATAAACTCTATTCCTCGGCGAAAACAC 1234
Query 2653 CAGAAGCTCGGTTTGTGAAACGGTTGCTTGTAAGATTGCAAGCTCTTCATCAGAAACACA 2712
| ||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||
Sbjct 1235 CGGAAGCTCGGTTTGTGAAACGGCTGCTTGCAAGATTGCAAGCTCTTCATCAGAATCACA 1294
Query 2713 GGAGATACACGCACATCGACATGTTCTTAGGGGAAGTTCTTGGAGCAGTTCTT-TTGGGA 2771
|||||||||||||||| |||||||||||||||||| |||||||||||||| || ||||||
Sbjct 1295 GGAGATACACGCACATAGACATGTTCTTAGGGGAAATTCTTGGAGCAGTT-TTCTTGGGA 1353
Query 2772 GGCGATGACGCTTCACTGAAGCCGAAAATGAGAGCCGAGCACATAAAAGTGATCGCGGAA 2831
|| ||| |||||||| ||||||||||| || ||| |||||||||||||||||||| |||
Sbjct 1354 GGAGATCACGCTTCATTGAAGCCGAAACTGCGAGTTGAGCACATAAAAGTGATCGCTGAA 1413
Query 2832 GGGGATGAATCGAGAGATGGTAAGATATTGATCGATAAACTGCGCGGCAAACAAATAAAG 2891
||||||||||| | ||||||| |||||||||| |||||||||| || ||||||||||||
Sbjct 1414 GGGGATGAATCAAAAGATGGTCAGATATTGATTGATAAACTGCATGGAAAACAAATAAAG 1473
Query 2892 ATACTCGAAAGAGTAGACCTAATAAGCAT-CTCTGAGAGTTTTGCTTCTAGACTCGATGA 2950
||||||||||||||||| || | | || | || |||||||||||||||||||||||||||
Sbjct 1474 ATACTCGAAAGAGTAGATCTCAGAGGC-TGCTATGAGAGTTTTGCTTCTAGACTCGATGA 1532
Query 2951 TAAGAAACAATCTGCAGTAATAGGAAGCTTTGAAGAACAAAAGAA-GATATGGAGCACAC 3009
|||||||||||||||||| |||||||||||||||||||| ||| || ||||| |||||
Sbjct 1533 TAAGAAACAATCTGCAGTCATAGGAAGCTTTGAAGAACAGG-GAAAGAAATGGAACACAC 1591
Query 3010 CACCAAG 3016
|||||||
Sbjct 1592 CACCAAG 1598
> Ahg488773 jgi|Araly1|488773|fgenesh2_kg.6__1907__AT5G18870.1
Length=756
Score = 130 bits (70), Expect = 7e-29
Identities = 81/86 (94%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 1084 GTGGAAACTTGTTCACAGATTAT-ACAAGTAATCCTTACTCTGAATTCAACATCTTCGCT 1142
|||| |||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||
Sbjct 650 GTGGGAACTTGTTCACAGATT-TCACAAGTAATCCTTACGCTGAATTCAACATCTTCACT 708
Query 1143 GATCCTTTCGCTGCTTACCAGGTGTT 1168
||||||||||||||||||||||||||
Sbjct 709 GATCCTTTCGCTGCTTACCAGGTGTT 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122659557779
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5