BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18870.1
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488773 jgi|Araly1|488773|fgenesh2_kg.6__1907__AT5G18870.1 1125 0.0
Ahg893806 jgi|Araly1|893806|Al_scaffold_0006_1802 132 4e-30
> Ahg488773 jgi|Araly1|488773|fgenesh2_kg.6__1907__AT5G18870.1
Length=756
Score = 1125 bits (609), Expect = 0.0
Identities = 718/769 (93%), Gaps = 14/769 (2%)
Strand=Plus/Plus
Query 10 CCACGAAGGTTCATTCTAGTCGTCACCATTCTTGGACTCTTAGGTCATAACCTCACACAT 69
|||| |||||| ||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1 CCACAAAGGTTTGTTCTAGTCGTCACCATTATTGGACTCTTAGGTCATGACCTCACATGT 60
Query 70 GTTCTGAATAGCCCACACCGTATTCTCTTGGACACAGATGTCGACACAGACGATTTCATC 129
|||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 61 GTTCTGTCTAGCCCACACCGTATTCTATTGGACACAGATGTCGACACAGACGACTTCATC 120
Query 130 GCTCTCTTGTACCTCTTGAAGCTCAACAAAACAGAATTCGATCTAGTCGGGATCACATTA 189
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 121 GCTCTGTTGTACCTCTTGAAGCTCAATAAAACAGAATTCGATCTAGTCGGGATTACATTA 180
Query 190 AGTGCCAATTCTTGGACAAACGCAGGACATGGAGTGAATCATATATACGACATTCTTTAC 249
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTGCCAACGCTTGGACAAACGCAGGACATGGAGTGAATCATATATACGACATTCTTTAC 240
Query 250 ATGATGGGTCGTGACGATATCACCGTTGGTGTTGGAGGAGAAGGTGGGATTCTCGAAGAT 309
||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||| |||
Sbjct 241 ATGATGGGTCGTGACGATATCCCCGTTGGTATTGGAGGTGAAGGTGGGATTCTCGATGAT 300
Query 310 GGTACTATTCTTCCTGACGTCGGTGATTATCTTCCGATCATCGAACAGGGGATGACAACA 369
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 301 GGTACTATTCTTCCTGACGTCGGTGGTTATCTTCCGATCATCGAGCAGGGGATGACAACA 360
Query 370 GCAGGAGGATGCAGATACAGACAATCCATTCCAAAAGGTCGTATACAAAAGATTGACTCC 429
|||||||||||||||||||||||||||||||||||||||| | | || ||||
Sbjct 361 GCAGGAGGATGCAGATACAGACAATCCATTCCAAAAGGTC-T-T------GA----CTCC 408
Query 430 AATTATGGATTTCGTAAACATTTTCTTCCTCAGGGGAACCGAAGATACACTCCTCTCGAG 489
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 409 AATTATGGATTTCGTAAACATTTTCTTCCTCTGGGGAACAGAAGATACACTCCTCTCGAG 468
Query 490 CAACCAACGGCACAAAAAGTAATCGTCGACAAAGTTTCTGAAGGTCCAATCAGCATCTTC 549
|||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||
Sbjct 469 CAACCAACGGCACAAAAAGTAATCTTCGACAAAGTTTCTCAAGGTCCAATAAGCATCTTC 528
Query 550 GTGATCGGTTCTCACACCAATCTAGCTCTCTTCATGATGTCAAATCCTCACCTCAAACAT 609
||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||
Sbjct 529 GTGATCGGTTCTCACACCAATCTCGCTCTCTTCATGATGTCAACTCCTTACCTCAAACAT 588
Query 610 AACATCCAACACATTTACGTTATGGGTGGTAGTGTACGCTGTCAAAACCCTAACGGATTC 669
||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 589 AACATCCAACACATTTACGTTATGGGTGGTAGTGTACGCTGTCCAAACCCCACCGGATTC 648
Query 670 TGCGGAAACTTGTTCACAGATTAT-ACAAGTAATCCTTACGCTGAATTCAACATCTTCAC 728
|| || |||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 649 TGTGGGAACTTGTTCACAGATT-TCACAAGTAATCCTTACGCTGAATTCAACATCTTCAC 707
Query 729 CGATCCTTTTGCTGCTTACCAGGTGTTCCGATTACTATGGTTCCTTTAG 777
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 708 TGATCCTTTCGCTGCTTACCAGGTGTTCCGATTACTATGGTTCCTTTAG 756
> Ahg893806 jgi|Araly1|893806|Al_scaffold_0006_1802
Length=2676
Score = 132 bits (71), Expect = 4e-30
Identities = 79/83 (95%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 673 GGAAACTTGTTCACAGATTATACAAGTAATCCTTACGCTGAATTCAACATCTTCACCGAT 732
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 754 GGAAACTTGTTCACAGATTATACAAGTAATCCTTACGCTGAATTCAACATCTTCGCTGAT 813
Query 733 CCTTTTGCTGCTTACCAGGTGTT 755
||||| ||| |||||||||||||
Sbjct 814 CCTTTCGCTTCTTACCAGGTGTT 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28668433584
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5