BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18870.1 Length=777 Score E Sequences producing significant alignments: (Bits) Value Ahg488773 jgi|Araly1|488773|fgenesh2_kg.6__1907__AT5G18870.1 1125 0.0 Ahg893806 jgi|Araly1|893806|Al_scaffold_0006_1802 132 4e-30 > Ahg488773 jgi|Araly1|488773|fgenesh2_kg.6__1907__AT5G18870.1 Length=756 Score = 1125 bits (609), Expect = 0.0 Identities = 718/769 (93%), Gaps = 14/769 (2%) Strand=Plus/Plus Query 10 CCACGAAGGTTCATTCTAGTCGTCACCATTCTTGGACTCTTAGGTCATAACCTCACACAT 69 |||| |||||| ||||||||||||||||| ||||||||||||||||| |||||||| | Sbjct 1 CCACAAAGGTTTGTTCTAGTCGTCACCATTATTGGACTCTTAGGTCATGACCTCACATGT 60 Query 70 GTTCTGAATAGCCCACACCGTATTCTCTTGGACACAGATGTCGACACAGACGATTTCATC 129 |||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 61 GTTCTGTCTAGCCCACACCGTATTCTATTGGACACAGATGTCGACACAGACGACTTCATC 120 Query 130 GCTCTCTTGTACCTCTTGAAGCTCAACAAAACAGAATTCGATCTAGTCGGGATCACATTA 189 ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 121 GCTCTGTTGTACCTCTTGAAGCTCAATAAAACAGAATTCGATCTAGTCGGGATTACATTA 180 Query 190 AGTGCCAATTCTTGGACAAACGCAGGACATGGAGTGAATCATATATACGACATTCTTTAC 249 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AGTGCCAACGCTTGGACAAACGCAGGACATGGAGTGAATCATATATACGACATTCTTTAC 240 Query 250 ATGATGGGTCGTGACGATATCACCGTTGGTGTTGGAGGAGAAGGTGGGATTCTCGAAGAT 309 ||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||| ||| Sbjct 241 ATGATGGGTCGTGACGATATCCCCGTTGGTATTGGAGGTGAAGGTGGGATTCTCGATGAT 300 Query 310 GGTACTATTCTTCCTGACGTCGGTGATTATCTTCCGATCATCGAACAGGGGATGACAACA 369 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 301 GGTACTATTCTTCCTGACGTCGGTGGTTATCTTCCGATCATCGAGCAGGGGATGACAACA 360 Query 370 GCAGGAGGATGCAGATACAGACAATCCATTCCAAAAGGTCGTATACAAAAGATTGACTCC 429 |||||||||||||||||||||||||||||||||||||||| | | || |||| Sbjct 361 GCAGGAGGATGCAGATACAGACAATCCATTCCAAAAGGTC-T-T------GA----CTCC 408 Query 430 AATTATGGATTTCGTAAACATTTTCTTCCTCAGGGGAACCGAAGATACACTCCTCTCGAG 489 ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 409 AATTATGGATTTCGTAAACATTTTCTTCCTCTGGGGAACAGAAGATACACTCCTCTCGAG 468 Query 490 CAACCAACGGCACAAAAAGTAATCGTCGACAAAGTTTCTGAAGGTCCAATCAGCATCTTC 549 |||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| Sbjct 469 CAACCAACGGCACAAAAAGTAATCTTCGACAAAGTTTCTCAAGGTCCAATAAGCATCTTC 528 Query 550 GTGATCGGTTCTCACACCAATCTAGCTCTCTTCATGATGTCAAATCCTCACCTCAAACAT 609 ||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||| Sbjct 529 GTGATCGGTTCTCACACCAATCTCGCTCTCTTCATGATGTCAACTCCTTACCTCAAACAT 588 Query 610 AACATCCAACACATTTACGTTATGGGTGGTAGTGTACGCTGTCAAAACCCTAACGGATTC 669 ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| Sbjct 589 AACATCCAACACATTTACGTTATGGGTGGTAGTGTACGCTGTCCAAACCCCACCGGATTC 648 Query 670 TGCGGAAACTTGTTCACAGATTAT-ACAAGTAATCCTTACGCTGAATTCAACATCTTCAC 728 || || |||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 649 TGTGGGAACTTGTTCACAGATT-TCACAAGTAATCCTTACGCTGAATTCAACATCTTCAC 707 Query 729 CGATCCTTTTGCTGCTTACCAGGTGTTCCGATTACTATGGTTCCTTTAG 777 |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 708 TGATCCTTTCGCTGCTTACCAGGTGTTCCGATTACTATGGTTCCTTTAG 756 > Ahg893806 jgi|Araly1|893806|Al_scaffold_0006_1802 Length=2676 Score = 132 bits (71), Expect = 4e-30 Identities = 79/83 (95%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 673 GGAAACTTGTTCACAGATTATACAAGTAATCCTTACGCTGAATTCAACATCTTCACCGAT 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 754 GGAAACTTGTTCACAGATTATACAAGTAATCCTTACGCTGAATTCAACATCTTCGCTGAT 813 Query 733 CCTTTTGCTGCTTACCAGGTGTT 755 ||||| ||| ||||||||||||| Sbjct 814 CCTTTCGCTTCTTACCAGGTGTT 836 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28668433584 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5