BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18890.1 Length=1653 Score E Sequences producing significant alignments: (Bits) Value Ahg326285 jgi|Araly1|326285|fgenesh1_pm.C_scaffold_6001505 2211 0.0 Ahg893806 jgi|Araly1|893806|Al_scaffold_0006_1802 1818 0.0 > Ahg326285 jgi|Araly1|326285|fgenesh1_pm.C_scaffold_6001505 Length=1623 Score = 2211 bits (1197), Expect = 0.0 Identities = 1498/1638 (91%), Gaps = 42/1638 (3%) Strand=Plus/Plus Query 1 ATGAGAAACTCTGCTAGTAGTAATAAGAACAACAATAAAGGTCAGAATGATTTCGCGGAG 60 ||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1 ATGAGAAACTCTGGTAATAGTAATAAGAACAACAATAAAGGTGAGAATGATTTCGCGGAG 60 Query 61 ATGGAGTATATGAACATAACCGTTGTTACTTCAAACGAACCTTATGGATTATTCGACAGT 120 ||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| Sbjct 61 ATGGAGTATATGAACATAACCATTGTTACTTCAAACGAACCTTATGGAATACCCGACAGT 120 Query 121 TCAAATCCATTCTTTTATAAAAGAAGAACTCCAAAGTTTAACCTAACCCTTGGAGGAGTT 180 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 121 TCAAATCCATTCTTTTATAAAAAAAGAACTCCAAAGTTTAACCTAACCCTTGGAGGAGTT 180 Query 181 CACAGTGGCCATGTTCAGAGGGGTTTGCGCGACCCAATCTGCATATCGACTAGCGGAAAA 240 |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 181 CACAGTGGTCATGTTCAGAGGGGTTTGCGCGACCCAATCTGCATATCGAGAAGCGGAAAA 240 Query 241 GGAAACTGCAGGGATGGTTACACAAAAGAGACCTCCGGACCTGATTCAGTTCGTGTACTT 300 |||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 241 GGAAACTGCAAGGATGGTTACACAAAAGAGACCTTCGGGCCTGATTCAGTTCGTGTACTT 300 Query 301 GTCGCAACACGAGCTAAACCGAGCAAGAACTTGAATAGTGAACTGGATAGAGAATTTTAT 360 |||||||||||||||||||||||||||||||| || ||||||||||||||||| || ||| Sbjct 301 GTCGCAACACGAGCTAAACCGAGCAAGAACTTCAACAGTGAACTGGATAGAGAGTTCTAT 360 Query 361 GATC-ATTTTTTGGAAGTTTTGAATAGGCCTGAAGAAACGGGGAGGTTTCACTTTTCAAC 419 || | | ||||||||||||||||| ||||||| |||||| ||||||||| |||||||||| Sbjct 361 GA-CGACTTTTTGGAAGTTTTGAACAGGCCTGGAGAAACAGGGAGGTTTAACTTTTCAAC 419 Query 420 TCAGTTTCTGTATTACAGAGAAGAATTGTTCATAGCAGAA-CTTAATAACTCACGGCTGG 478 |||||||||||| || ||||||||||||||||||||| || |||| |||| ||| ||| | Sbjct 420 TCAGTTTCTGTACTATAGAGAAGAATTGTTCATAGCA-AATCTTAGTAACACACAGCTCG 478 Query 479 GAGGAAAGCCTGTTGTTTTCGATATGGACATGAGCGCCGGAGATTTCCTCTCTCTCTTTT 538 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 479 GAGGAAAGCCTGTTATTTTCGATATGGACATGAGCGCCGGAGATTTCCTCTCTCTCTTCT 538 Query 539 ATCTCCTTAAAGTTCCAGTGGAAATCATAGATTTGAAGGCGGTTATCGTGAGCCCAACCG 598 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 539 ATCTCCTTAAAGTTCCAGTGGAAATTATAGATTTGAAGGCGGTTATCGTGAGCCCAACTG 598 Query 599 GTTGGGCTAATACAGCGACAATTGATGTGGTCTACGATCTGCTGCATATGATGGGACGCG 658 ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 599 GTTGGGCTAATGCAGCGACAATTGATGTGGTCTACGATCTTTTTCATATGATGGGACGCG 658 Query 659 ATGACATTCCGGTCGGTTTAGGAGATATGTTCGCCATT-AACCAATCTGAACCGGTTTTT 717 ||||||||||| ||||| ||||||||||||||||| || |||||||||||||||| |||| Sbjct 659 ATGACATTCCGATCGGTCTAGGAGATATGTTCGCC-TTGAACCAATCTGAACCGGGTTTT 717 Query 718 CCATCTGCTGGTGACTGCAAGTACGCCAAAGCGGTTCCACAAGGTTGTGGCGGTTTTCTT 777 ||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| Sbjct 718 CCATCTGCTGGAGACTGCAAGTACGCCAAAGCGGTTCCCCAAGGCTGTGGTGGTTTTCTT 777 Query 778 GATTCCGACACTCTCTATGGCCTTGCTCGTGACCTCCCAAGAAGCCCTCGCAG--GTA-T 834 |||||||||||||||||||| |||||||||||||||||||||||||||||||| | | Sbjct 778 GATTCCGACACTCTCTATGGTCTTGCTCGTGACCTCCCAAGAAGCCCTCGCAGAAACACT 837 Query 835 ---GAGAACTCAGTGGCACATGGAGCTCCGAGCGACACTGATCGGCCTGAACTCCGACAA 891 ||||||||||||||| ||||||||||||| |||||||||||| ||||| |||||||| Sbjct 838 GCAGAGAACTCAGTGGCAAATGGAGCTCCGAGGGACACTGATCGGACTGAAATCCGACAA 897 Query 892 CCTCTGGCCCTTGAAGTTTGGCAAAATCTGACCAAATCTGTTGATGAAGTGTCTAAGATC 951 |||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 898 CCTCTGGCACTTGAAGTTTGGCAAAATCTGACCAAATCTGTTAATGAAGTGTCAAAGATC 957 Query 952 ACCGTACTAACCAATGGACCATTAACTAGCTTAGCCAAAATCATCTCATCAGATAAAAAC 1011 || ||||||||||||||||| || |||||||||| | || |||| Sbjct 958 ACTGTACTAACCAATGGACCGTTGACTAGCTTAG----------C-CA--AGAT------ 998 Query 1012 TCATCCTCAATAATCAAGGAAGTTTACATCGTGGGTGGACATATAAGCCGTGGAAAATCA 1071 | || ||| ||| | |||||||||||||| ||||||||||||||||||| |||||| Sbjct 999 T-AT-CTC----ATC-A-GAAGTTTACATCGTCGGTGGACATATAAGCCGTGAAAAATCT 1050 Query 1072 GACAAAGGGAACATATTCACAGTTCCTTCGAATTCCTACGCTGAATTCAATATGTTTCTT 1131 |||||||||||| |||||||||||||||||||| | || ||||||||||||||||||||| Sbjct 1051 GACAAAGGGAACGTATTCACAGTTCCTTCGAATGCATATGCTGAATTCAATATGTTTCTT 1110 Query 1132 GATCCTTTAGCAGCTAAGACTGTTCTTGAATCCGGTCTAAACATCACACTCATCCCTCTA 1191 |||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| Sbjct 1111 GATCCTTTAGCAGCTAAGACCATTCTTGAATCAGGTCTAAACATCATACTCATCCCTCTA 1170 Query 1192 GCAACCCAACGCGAGTTTTCTTTCCAAGCAATGCTTAATAGACTCTATTCCTCGACGAAA 1251 |||||||||||| |||||||||| ||| |||||||||||| ||||||||||||| ||||| Sbjct 1171 GCAACCCAACGCAAGTTTTCTTTTCAACCAATGCTTAATAAACTCTATTCCTCGGCGAAA 1230 Query 1252 ACACCCGAAGCTCGGTTTGTGAAACGGCTGCTTACAAGATTGCAAGCTCTTCATCAGAAA 1311 ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1231 ACACCGGAAGCTCGGTTTGTGAAACGGCTGCTTGCAAGATTGCAAGCTCTTCATCAGAAT 1290 Query 1312 CAGAGGAGATACATGCACATGGACATGTTCTTAGGGGAAATTCTTGGAGCAATTTTCTTG 1371 || |||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 1291 CACAGGAGATACACGCACATAGACATGTTCTTAGGGGAAATTCTTGGAGCAGTTTTCTTG 1350 Query 1372 GGAGGAGATCACGCTTTATTGAAGCCGAAAATGCGAACTGAGTACATAAAAGTGATCGCT 1431 |||||||||||||||| ||||||||||||| ||||| |||| ||||||||||||||||| Sbjct 1351 GGAGGAGATCACGCTTCATTGAAGCCGAAACTGCGAGTTGAGCACATAAAAGTGATCGCT 1410 Query 1432 GAAGGAGATGAATCGAAAGATGGCCACATATTGATTGACAAACTGCGCGGAAAACAAATA 1491 ||||| |||||||| |||||||| || ||||||||||| ||||||| |||||||||||| Sbjct 1411 GAAGGGGATGAATCAAAAGATGGTCAGATATTGATTGATAAACTGCATGGAAAACAAATA 1470 Query 1492 AAGATACTCGAAAGAGTGGATTTGAGAGGCTGCTATGAGAGTTTTGCTTCTAGACTCGAT 1551 ||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| Sbjct 1471 AAGATACTCGAAAGAGTAGATCTCAGAGGCTGCTATGAGAGTTTTGCTTCTAGACTCGAT 1530 Query 1552 GATAAGAAACAATCTGCAGTCATAGGAAGCTTTGAAGAACAAAGGAT-GAAATGGAACAC 1610 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 1531 GATAAGAAACAATCTGCAGTCATAGGAAGCTTTGAAGAACAG-GGAAAGAAATGGAACAC 1589 Query 1611 ACCACCAAGTT-ACAAAC 1627 ||||||||||| | |||| Sbjct 1590 ACCACCAAGTTCAGAAAC 1607 > Ahg893806 jgi|Araly1|893806|Al_scaffold_0006_1802 Length=2676 Score = 1818 bits (984), Expect = 0.0 Identities = 1407/1611 (87%), Gaps = 29/1611 (2%) Strand=Plus/Plus Query 28 AACAACAATAAA-GGTCAGAATGATTTCGCGGAGATGGAGTATATGAACATAACCGTTGT 86 |||||||| ||| ||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 1072 AACAACAA-AAATGGTGAGAACGATTTCGCGGAGATGGAGTATATGAACATAACCGTTGT 1130 Query 87 TACTTCAAACGAACCTTATGGATTATTCGACAGTTCAAATCCATTCTTTTATAAAAGAAG 146 |||||||||| ||||||||||| || |||| | ||||||||||||||| |||| ||||| Sbjct 1131 TACTTCAAACAAACCTTATGGAAGATCCGACGGCTCAAATCCATTCTTTGATAATAGAAG 1190 Query 147 AACTCCAAAGTTTAACCTAACCCTTGGAGGAGTTCACAGTGGCCATGTTCAGAGGGGTTT 206 |||||||||||||||||||||| ||||||||||||| ||||| |||||||||| |||||| Sbjct 1191 AACTCCAAAGTTTAACCTAACCGTTGGAGGAGTTCATAGTGGTCATGTTCAGATGGGTTT 1250 Query 207 GCGCGACCCAATC-TGCATATCGACTAGCGG---A--AA-AGGAAACTGCAGGGATGGTT 259 ||| || || | | ||| || | | ||||| | || |||||| || | |||||||| Sbjct 1251 GCGAGATCC-AGCTTGCTTACCAAAAAGCGGAAAAGGAAGAGGAAAGTGTAAGGATGGTT 1309 Query 260 ACACAAAAGAGACCTCCGGACCTGATTCAGTTCGTGTACTTGTCGCAACACGAGCTAAAC 319 ||||| |||||| ||| ||||||||||| |||||||| |||||||| ||||||||||||| Sbjct 1310 ACACACAAGAGATCTCTGGACCTGATTCTGTTCGTGTTCTTGTCGCGACACGAGCTAAAC 1369 Query 320 CGAGCA-AGAACTTGAATAGTGAACTGGATAGAGAATTTTATGATCATTTTTTGGAAGTT 378 | | || | ||| | || ||| |||| || ||||| || |||| | |||| |||||||| Sbjct 1370 CCAACATA-AACATCAAAAGTAAACTTGACAGAGAGTTCTATGTTGATTTCCTGGAAGTT 1428 Query 379 TTGAATAGGCCTGAAGAAACGGGGAGGTTTCACTTTTCAACTCAGTTTCTGTATTACAGA 438 |||||||| ||||||||||||||||| ||| |||||||| ||||||||| || |||| | Sbjct 1429 TTGAATAGACCTGAAGAAACGGGGAGATTTAACTTTTCATCTCAGTTTCCATACTACAAA 1488 Query 439 GAAGAATTGTTCATAGCAGAACTTAATAACTCACGGCTGGGAGGAAAGCCTGTTGTTTTC 498 |||||| |||| | | |||| |||| || |||| || |||||||||||||||||| Sbjct 1489 GAAGAACTGTTTAGACCAGATCTTAGCAAAACACGTCT---CGGAAAGCCTGTTGTTTTC 1545 Query 499 GATATGGACATGAGCGCCGGAGATTTCCTCTCTCTCTTTTATCTCCTTAAAGTTCCAGTG 558 ||||||||||||||||||||||||||||| |||||||| || ||||| |||||||||||| Sbjct 1546 GATATGGACATGAGCGCCGGAGATTTCCTTTCTCTCTTCTACCTCCTCAAAGTTCCAGTG 1605 Query 559 GAA-ATCATAGATTTGAAGGCGGTTATCGTGAGCCCAACCGGTTGGGCTAATACAGCGAC 617 ||| | || ||||||||||| |||| ||||||||||| |||||||||||| |||| || Sbjct 1606 GAAGA-AATCGATTTGAAGGCTATTATTGTGAGCCCAACTGGTTGGGCTAATGCAGCAAC 1664 Query 618 AATTGATGTGGTCTACGATCTGCTGCATATGATGGGACGCGATGACATTCCGGTCGGTTT 677 ||| || |||||||| |||||||| ||||||||||| || || |||||||| |||||| | Sbjct 1665 AATCGACGTGGTCTATGATCTGCTTCATATGATGGGTCGGGACGACATTCCAGTCGGTCT 1724 Query 678 AGGAGATATGTTCGCCATT-AACCAATCTGAACCGGTTTTTCCATCTGCTGGTGACTGCA 736 ||||| ||||| | |||| |||||||| || ||| |||| ||| | | ||| | |||| Sbjct 1725 GGGAGACATGTT-GGCATTGAACCAATCCGACCCGATTTTCCCACCGGTTGGAGGTTGCA 1783 Query 737 AGTACGCCAAAGCGGTTCCACAAGGTTGTGGCGGTTTTCTTGATTCCGACACTCTCTATG 796 | |||| ||| || ||||||| ||| |||||||| ||||| ||||||||||||||||| | Sbjct 1784 AATACGTCAAGGCTGTTCCACGAGGCTGTGGCGGATTTCTGGATTCCGACACTCTCTACG 1843 Query 797 GCCTTGCTCGTGACCTCCCAAGAAGCCCTCGCAGGT--A-T---GAGAACTCAGTGGCAC 850 | |||||||||||||| || |||||||| ||||| | | | ||||| ||||| ||| Sbjct 1844 GTCTTGCTCGTGACCTTCCGAGAAGCCCACGCAGATACACTGCAGAGAATTCAGTAGCAG 1903 Query 851 ATGGAGCTCCGAGCGACACTGATCGGCCTGAACTCCGACAACCTCTGGCCCTTGAAGTTT 910 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1904 ATGGAGCTCCGAGGGACACTGATCGGCCTGAACTCCGACAACCTCTGGCTCTTGAAGTTT 1963 Query 911 GGCAAAATCTGACCAAATCTGTTGATGAAGTGTCTAAGATCACCGTACTAACCAATGGAC 970 |||||||||| |||||||||| | | | ||||||||| ||||| |||||||||| ||||| Sbjct 1964 GGCAAAATCTAACCAAATCTGGTAACGGAGTGTCTAATATCACTGTACTAACCAGTGGAC 2023 Query 971 CATTAACTAGCTTAGCCAAAATCATCTCATCAGATAAAAACTCATCCTCAATAATCAAGG 1030 | || |||||||||||||| || ||||||||||||||||| ||||||||||||||||||| Sbjct 2024 CGTTGACTAGCTTAGCCAAGATTATCTCATCAGATAAAAAATCATCCTCAATAATCAAGG 2083 Query 1031 AAGTTTACATCGTGGGTGGACATATAAGCCGTGGA-AAATCAGACAAAGGGAACATATTC 1089 ||||||||||||||||||||||||||| || | || ||||||||||||||||| |||||| Sbjct 2084 AAGTTTACATCGTGGGTGGACATATAAACCCT-GAGAAATCAGACAAAGGGAATATATTC 2142 Query 1090 ACAGTTCCTTCGAATTCCTACGCTGAATTCAATATGTTTCTTGATCCTTTAGCAGCTAAG 1149 || |||||||||||| | || ||||||||||||||||||||||||||||||||||||||| Sbjct 2143 ACGGTTCCTTCGAATGCATATGCTGAATTCAATATGTTTCTTGATCCTTTAGCAGCTAAG 2202 Query 1150 ACTGTTCTTGAATCCGGTCTAAACATCACACTCATCCCTCTAGCAACCCAACGCGAGTTT 1209 || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2203 ACCGTTCTTGAATCCGGTCTAAACATCACACTCATCCCTCTAGCAACCCAACGCAAGTTT 2262 Query 1210 TCTTTCCAAGCAATGCTTAATAGACTCTATTCCTC-GACGAAAACACCCGAAGCTCGGTT 1268 ||||||||| ||||||||||||||||| || |||| | |||||||||||||||||||||| Sbjct 2263 TCTTTCCAACCAATGCTTAATAGACTCAATCCCTCAG-CGAAAACACCCGAAGCTCGGTT 2321 Query 1269 TGTGAAACGGCTGCTTACAAGATTGCAAGCTCTTCATCAGAAACAGAGGAGATACATGCA 1328 ||||| |||||||||| |||||||||||||||||||||||||||| |||||||||| ||| Sbjct 2322 TGTGAGACGGCTGCTTGCAAGATTGCAAGCTCTTCATCAGAAACACAGGAGATACACGCA 2381 Query 1329 CATGGACATGTTCTTAGGGGAAATTCTTGGAGCAATTTTCTTGGGAGGAGATCACGCTTT 1388 ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| Sbjct 2382 CATGGACATGTTCTTAGGGGAAATTATTGGAGCAGTTTTCTTGGGAGGCGATCACGCTTC 2441 Query 1389 ATTGAAGCCGAAAATGCGAACTGAGTACATAAAAGTGATCGCTGAAGGAGATGAATCGAA 1448 ||||||||||||| || || ||||| || ||||||||||||||||||| || ||||||| Sbjct 2442 ATTGAAGCCGAAACTGAGAGCTGAGCACTTAAAAGTGATCGCTGAAGGGGACGAATCGAT 2501 Query 1449 AGATGGCCACATATTGATTGACAAACTGCGCGGAAAACAAATAAAGATACTCGAAAGAGT 1508 |||||| | ||||||||||| ||||||||||| |||||||||||||||||||||| ||| Sbjct 2502 AGATGGTAAGATATTGATTGATAAACTGCGCGGCAAACAAATAAAGATACTCGAAATAGT 2561 Query 1509 GGATTTGAGAGGCTGCTATGAGAGTTTTGCTTCTAGACTCGATGATAAGAAACAATCTGC 1568 ||| ||||| ||| || |||||||||| |||||||||||||||||||||||||||| || Sbjct 2562 AGATCTGAGAAGCTTCTCTGAGAGTTTTACTTCTAGACTCGATGATAAGAAACAATCAGC 2621 Query 1569 AGTCATAGGAAGCTTTGAAGAACAAAGGATGAAATGGAACACACCACCAAG 1619 |||||||||||||||||||||||||| || ||||||| |||||||||||| Sbjct 2622 AGTCATAGGAAGCTTTGAAGAACAAAAGAAAAAATGGAGCACACCACCAAG 2672 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61972828615 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5