BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18890.1
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326285 jgi|Araly1|326285|fgenesh1_pm.C_scaffold_6001505 2211 0.0
Ahg893806 jgi|Araly1|893806|Al_scaffold_0006_1802 1818 0.0
> Ahg326285 jgi|Araly1|326285|fgenesh1_pm.C_scaffold_6001505
Length=1623
Score = 2211 bits (1197), Expect = 0.0
Identities = 1498/1638 (91%), Gaps = 42/1638 (3%)
Strand=Plus/Plus
Query 1 ATGAGAAACTCTGCTAGTAGTAATAAGAACAACAATAAAGGTCAGAATGATTTCGCGGAG 60
||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGAGAAACTCTGGTAATAGTAATAAGAACAACAATAAAGGTGAGAATGATTTCGCGGAG 60
Query 61 ATGGAGTATATGAACATAACCGTTGTTACTTCAAACGAACCTTATGGATTATTCGACAGT 120
||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 61 ATGGAGTATATGAACATAACCATTGTTACTTCAAACGAACCTTATGGAATACCCGACAGT 120
Query 121 TCAAATCCATTCTTTTATAAAAGAAGAACTCCAAAGTTTAACCTAACCCTTGGAGGAGTT 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAAATCCATTCTTTTATAAAAAAAGAACTCCAAAGTTTAACCTAACCCTTGGAGGAGTT 180
Query 181 CACAGTGGCCATGTTCAGAGGGGTTTGCGCGACCCAATCTGCATATCGACTAGCGGAAAA 240
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CACAGTGGTCATGTTCAGAGGGGTTTGCGCGACCCAATCTGCATATCGAGAAGCGGAAAA 240
Query 241 GGAAACTGCAGGGATGGTTACACAAAAGAGACCTCCGGACCTGATTCAGTTCGTGTACTT 300
|||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 241 GGAAACTGCAAGGATGGTTACACAAAAGAGACCTTCGGGCCTGATTCAGTTCGTGTACTT 300
Query 301 GTCGCAACACGAGCTAAACCGAGCAAGAACTTGAATAGTGAACTGGATAGAGAATTTTAT 360
|||||||||||||||||||||||||||||||| || ||||||||||||||||| || |||
Sbjct 301 GTCGCAACACGAGCTAAACCGAGCAAGAACTTCAACAGTGAACTGGATAGAGAGTTCTAT 360
Query 361 GATC-ATTTTTTGGAAGTTTTGAATAGGCCTGAAGAAACGGGGAGGTTTCACTTTTCAAC 419
|| | | ||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||
Sbjct 361 GA-CGACTTTTTGGAAGTTTTGAACAGGCCTGGAGAAACAGGGAGGTTTAACTTTTCAAC 419
Query 420 TCAGTTTCTGTATTACAGAGAAGAATTGTTCATAGCAGAA-CTTAATAACTCACGGCTGG 478
|||||||||||| || ||||||||||||||||||||| || |||| |||| ||| ||| |
Sbjct 420 TCAGTTTCTGTACTATAGAGAAGAATTGTTCATAGCA-AATCTTAGTAACACACAGCTCG 478
Query 479 GAGGAAAGCCTGTTGTTTTCGATATGGACATGAGCGCCGGAGATTTCCTCTCTCTCTTTT 538
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 GAGGAAAGCCTGTTATTTTCGATATGGACATGAGCGCCGGAGATTTCCTCTCTCTCTTCT 538
Query 539 ATCTCCTTAAAGTTCCAGTGGAAATCATAGATTTGAAGGCGGTTATCGTGAGCCCAACCG 598
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 539 ATCTCCTTAAAGTTCCAGTGGAAATTATAGATTTGAAGGCGGTTATCGTGAGCCCAACTG 598
Query 599 GTTGGGCTAATACAGCGACAATTGATGTGGTCTACGATCTGCTGCATATGATGGGACGCG 658
||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 599 GTTGGGCTAATGCAGCGACAATTGATGTGGTCTACGATCTTTTTCATATGATGGGACGCG 658
Query 659 ATGACATTCCGGTCGGTTTAGGAGATATGTTCGCCATT-AACCAATCTGAACCGGTTTTT 717
||||||||||| ||||| ||||||||||||||||| || |||||||||||||||| ||||
Sbjct 659 ATGACATTCCGATCGGTCTAGGAGATATGTTCGCC-TTGAACCAATCTGAACCGGGTTTT 717
Query 718 CCATCTGCTGGTGACTGCAAGTACGCCAAAGCGGTTCCACAAGGTTGTGGCGGTTTTCTT 777
||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 718 CCATCTGCTGGAGACTGCAAGTACGCCAAAGCGGTTCCCCAAGGCTGTGGTGGTTTTCTT 777
Query 778 GATTCCGACACTCTCTATGGCCTTGCTCGTGACCTCCCAAGAAGCCCTCGCAG--GTA-T 834
|||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 778 GATTCCGACACTCTCTATGGTCTTGCTCGTGACCTCCCAAGAAGCCCTCGCAGAAACACT 837
Query 835 ---GAGAACTCAGTGGCACATGGAGCTCCGAGCGACACTGATCGGCCTGAACTCCGACAA 891
||||||||||||||| ||||||||||||| |||||||||||| ||||| ||||||||
Sbjct 838 GCAGAGAACTCAGTGGCAAATGGAGCTCCGAGGGACACTGATCGGACTGAAATCCGACAA 897
Query 892 CCTCTGGCCCTTGAAGTTTGGCAAAATCTGACCAAATCTGTTGATGAAGTGTCTAAGATC 951
|||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 898 CCTCTGGCACTTGAAGTTTGGCAAAATCTGACCAAATCTGTTAATGAAGTGTCAAAGATC 957
Query 952 ACCGTACTAACCAATGGACCATTAACTAGCTTAGCCAAAATCATCTCATCAGATAAAAAC 1011
|| ||||||||||||||||| || |||||||||| | || ||||
Sbjct 958 ACTGTACTAACCAATGGACCGTTGACTAGCTTAG----------C-CA--AGAT------ 998
Query 1012 TCATCCTCAATAATCAAGGAAGTTTACATCGTGGGTGGACATATAAGCCGTGGAAAATCA 1071
| || ||| ||| | |||||||||||||| ||||||||||||||||||| ||||||
Sbjct 999 T-AT-CTC----ATC-A-GAAGTTTACATCGTCGGTGGACATATAAGCCGTGAAAAATCT 1050
Query 1072 GACAAAGGGAACATATTCACAGTTCCTTCGAATTCCTACGCTGAATTCAATATGTTTCTT 1131
|||||||||||| |||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 1051 GACAAAGGGAACGTATTCACAGTTCCTTCGAATGCATATGCTGAATTCAATATGTTTCTT 1110
Query 1132 GATCCTTTAGCAGCTAAGACTGTTCTTGAATCCGGTCTAAACATCACACTCATCCCTCTA 1191
|||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||
Sbjct 1111 GATCCTTTAGCAGCTAAGACCATTCTTGAATCAGGTCTAAACATCATACTCATCCCTCTA 1170
Query 1192 GCAACCCAACGCGAGTTTTCTTTCCAAGCAATGCTTAATAGACTCTATTCCTCGACGAAA 1251
|||||||||||| |||||||||| ||| |||||||||||| ||||||||||||| |||||
Sbjct 1171 GCAACCCAACGCAAGTTTTCTTTTCAACCAATGCTTAATAAACTCTATTCCTCGGCGAAA 1230
Query 1252 ACACCCGAAGCTCGGTTTGTGAAACGGCTGCTTACAAGATTGCAAGCTCTTCATCAGAAA 1311
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1231 ACACCGGAAGCTCGGTTTGTGAAACGGCTGCTTGCAAGATTGCAAGCTCTTCATCAGAAT 1290
Query 1312 CAGAGGAGATACATGCACATGGACATGTTCTTAGGGGAAATTCTTGGAGCAATTTTCTTG 1371
|| |||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1291 CACAGGAGATACACGCACATAGACATGTTCTTAGGGGAAATTCTTGGAGCAGTTTTCTTG 1350
Query 1372 GGAGGAGATCACGCTTTATTGAAGCCGAAAATGCGAACTGAGTACATAAAAGTGATCGCT 1431
|||||||||||||||| ||||||||||||| ||||| |||| |||||||||||||||||
Sbjct 1351 GGAGGAGATCACGCTTCATTGAAGCCGAAACTGCGAGTTGAGCACATAAAAGTGATCGCT 1410
Query 1432 GAAGGAGATGAATCGAAAGATGGCCACATATTGATTGACAAACTGCGCGGAAAACAAATA 1491
||||| |||||||| |||||||| || ||||||||||| ||||||| ||||||||||||
Sbjct 1411 GAAGGGGATGAATCAAAAGATGGTCAGATATTGATTGATAAACTGCATGGAAAACAAATA 1470
Query 1492 AAGATACTCGAAAGAGTGGATTTGAGAGGCTGCTATGAGAGTTTTGCTTCTAGACTCGAT 1551
||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1471 AAGATACTCGAAAGAGTAGATCTCAGAGGCTGCTATGAGAGTTTTGCTTCTAGACTCGAT 1530
Query 1552 GATAAGAAACAATCTGCAGTCATAGGAAGCTTTGAAGAACAAAGGAT-GAAATGGAACAC 1610
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1531 GATAAGAAACAATCTGCAGTCATAGGAAGCTTTGAAGAACAG-GGAAAGAAATGGAACAC 1589
Query 1611 ACCACCAAGTT-ACAAAC 1627
||||||||||| | ||||
Sbjct 1590 ACCACCAAGTTCAGAAAC 1607
> Ahg893806 jgi|Araly1|893806|Al_scaffold_0006_1802
Length=2676
Score = 1818 bits (984), Expect = 0.0
Identities = 1407/1611 (87%), Gaps = 29/1611 (2%)
Strand=Plus/Plus
Query 28 AACAACAATAAA-GGTCAGAATGATTTCGCGGAGATGGAGTATATGAACATAACCGTTGT 86
|||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1072 AACAACAA-AAATGGTGAGAACGATTTCGCGGAGATGGAGTATATGAACATAACCGTTGT 1130
Query 87 TACTTCAAACGAACCTTATGGATTATTCGACAGTTCAAATCCATTCTTTTATAAAAGAAG 146
|||||||||| ||||||||||| || |||| | ||||||||||||||| |||| |||||
Sbjct 1131 TACTTCAAACAAACCTTATGGAAGATCCGACGGCTCAAATCCATTCTTTGATAATAGAAG 1190
Query 147 AACTCCAAAGTTTAACCTAACCCTTGGAGGAGTTCACAGTGGCCATGTTCAGAGGGGTTT 206
|||||||||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||
Sbjct 1191 AACTCCAAAGTTTAACCTAACCGTTGGAGGAGTTCATAGTGGTCATGTTCAGATGGGTTT 1250
Query 207 GCGCGACCCAATC-TGCATATCGACTAGCGG---A--AA-AGGAAACTGCAGGGATGGTT 259
||| || || | | ||| || | | ||||| | || |||||| || | ||||||||
Sbjct 1251 GCGAGATCC-AGCTTGCTTACCAAAAAGCGGAAAAGGAAGAGGAAAGTGTAAGGATGGTT 1309
Query 260 ACACAAAAGAGACCTCCGGACCTGATTCAGTTCGTGTACTTGTCGCAACACGAGCTAAAC 319
||||| |||||| ||| ||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1310 ACACACAAGAGATCTCTGGACCTGATTCTGTTCGTGTTCTTGTCGCGACACGAGCTAAAC 1369
Query 320 CGAGCA-AGAACTTGAATAGTGAACTGGATAGAGAATTTTATGATCATTTTTTGGAAGTT 378
| | || | ||| | || ||| |||| || ||||| || |||| | |||| ||||||||
Sbjct 1370 CCAACATA-AACATCAAAAGTAAACTTGACAGAGAGTTCTATGTTGATTTCCTGGAAGTT 1428
Query 379 TTGAATAGGCCTGAAGAAACGGGGAGGTTTCACTTTTCAACTCAGTTTCTGTATTACAGA 438
|||||||| ||||||||||||||||| ||| |||||||| ||||||||| || |||| |
Sbjct 1429 TTGAATAGACCTGAAGAAACGGGGAGATTTAACTTTTCATCTCAGTTTCCATACTACAAA 1488
Query 439 GAAGAATTGTTCATAGCAGAACTTAATAACTCACGGCTGGGAGGAAAGCCTGTTGTTTTC 498
|||||| |||| | | |||| |||| || |||| || ||||||||||||||||||
Sbjct 1489 GAAGAACTGTTTAGACCAGATCTTAGCAAAACACGTCT---CGGAAAGCCTGTTGTTTTC 1545
Query 499 GATATGGACATGAGCGCCGGAGATTTCCTCTCTCTCTTTTATCTCCTTAAAGTTCCAGTG 558
||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||
Sbjct 1546 GATATGGACATGAGCGCCGGAGATTTCCTTTCTCTCTTCTACCTCCTCAAAGTTCCAGTG 1605
Query 559 GAA-ATCATAGATTTGAAGGCGGTTATCGTGAGCCCAACCGGTTGGGCTAATACAGCGAC 617
||| | || ||||||||||| |||| ||||||||||| |||||||||||| |||| ||
Sbjct 1606 GAAGA-AATCGATTTGAAGGCTATTATTGTGAGCCCAACTGGTTGGGCTAATGCAGCAAC 1664
Query 618 AATTGATGTGGTCTACGATCTGCTGCATATGATGGGACGCGATGACATTCCGGTCGGTTT 677
||| || |||||||| |||||||| ||||||||||| || || |||||||| |||||| |
Sbjct 1665 AATCGACGTGGTCTATGATCTGCTTCATATGATGGGTCGGGACGACATTCCAGTCGGTCT 1724
Query 678 AGGAGATATGTTCGCCATT-AACCAATCTGAACCGGTTTTTCCATCTGCTGGTGACTGCA 736
||||| ||||| | |||| |||||||| || ||| |||| ||| | | ||| | ||||
Sbjct 1725 GGGAGACATGTT-GGCATTGAACCAATCCGACCCGATTTTCCCACCGGTTGGAGGTTGCA 1783
Query 737 AGTACGCCAAAGCGGTTCCACAAGGTTGTGGCGGTTTTCTTGATTCCGACACTCTCTATG 796
| |||| ||| || ||||||| ||| |||||||| ||||| ||||||||||||||||| |
Sbjct 1784 AATACGTCAAGGCTGTTCCACGAGGCTGTGGCGGATTTCTGGATTCCGACACTCTCTACG 1843
Query 797 GCCTTGCTCGTGACCTCCCAAGAAGCCCTCGCAGGT--A-T---GAGAACTCAGTGGCAC 850
| |||||||||||||| || |||||||| ||||| | | | ||||| ||||| |||
Sbjct 1844 GTCTTGCTCGTGACCTTCCGAGAAGCCCACGCAGATACACTGCAGAGAATTCAGTAGCAG 1903
Query 851 ATGGAGCTCCGAGCGACACTGATCGGCCTGAACTCCGACAACCTCTGGCCCTTGAAGTTT 910
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1904 ATGGAGCTCCGAGGGACACTGATCGGCCTGAACTCCGACAACCTCTGGCTCTTGAAGTTT 1963
Query 911 GGCAAAATCTGACCAAATCTGTTGATGAAGTGTCTAAGATCACCGTACTAACCAATGGAC 970
|||||||||| |||||||||| | | | ||||||||| ||||| |||||||||| |||||
Sbjct 1964 GGCAAAATCTAACCAAATCTGGTAACGGAGTGTCTAATATCACTGTACTAACCAGTGGAC 2023
Query 971 CATTAACTAGCTTAGCCAAAATCATCTCATCAGATAAAAACTCATCCTCAATAATCAAGG 1030
| || |||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 2024 CGTTGACTAGCTTAGCCAAGATTATCTCATCAGATAAAAAATCATCCTCAATAATCAAGG 2083
Query 1031 AAGTTTACATCGTGGGTGGACATATAAGCCGTGGA-AAATCAGACAAAGGGAACATATTC 1089
||||||||||||||||||||||||||| || | || ||||||||||||||||| ||||||
Sbjct 2084 AAGTTTACATCGTGGGTGGACATATAAACCCT-GAGAAATCAGACAAAGGGAATATATTC 2142
Query 1090 ACAGTTCCTTCGAATTCCTACGCTGAATTCAATATGTTTCTTGATCCTTTAGCAGCTAAG 1149
|| |||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 2143 ACGGTTCCTTCGAATGCATATGCTGAATTCAATATGTTTCTTGATCCTTTAGCAGCTAAG 2202
Query 1150 ACTGTTCTTGAATCCGGTCTAAACATCACACTCATCCCTCTAGCAACCCAACGCGAGTTT 1209
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2203 ACCGTTCTTGAATCCGGTCTAAACATCACACTCATCCCTCTAGCAACCCAACGCAAGTTT 2262
Query 1210 TCTTTCCAAGCAATGCTTAATAGACTCTATTCCTC-GACGAAAACACCCGAAGCTCGGTT 1268
||||||||| ||||||||||||||||| || |||| | ||||||||||||||||||||||
Sbjct 2263 TCTTTCCAACCAATGCTTAATAGACTCAATCCCTCAG-CGAAAACACCCGAAGCTCGGTT 2321
Query 1269 TGTGAAACGGCTGCTTACAAGATTGCAAGCTCTTCATCAGAAACAGAGGAGATACATGCA 1328
||||| |||||||||| |||||||||||||||||||||||||||| |||||||||| |||
Sbjct 2322 TGTGAGACGGCTGCTTGCAAGATTGCAAGCTCTTCATCAGAAACACAGGAGATACACGCA 2381
Query 1329 CATGGACATGTTCTTAGGGGAAATTCTTGGAGCAATTTTCTTGGGAGGAGATCACGCTTT 1388
||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||
Sbjct 2382 CATGGACATGTTCTTAGGGGAAATTATTGGAGCAGTTTTCTTGGGAGGCGATCACGCTTC 2441
Query 1389 ATTGAAGCCGAAAATGCGAACTGAGTACATAAAAGTGATCGCTGAAGGAGATGAATCGAA 1448
||||||||||||| || || ||||| || ||||||||||||||||||| || |||||||
Sbjct 2442 ATTGAAGCCGAAACTGAGAGCTGAGCACTTAAAAGTGATCGCTGAAGGGGACGAATCGAT 2501
Query 1449 AGATGGCCACATATTGATTGACAAACTGCGCGGAAAACAAATAAAGATACTCGAAAGAGT 1508
|||||| | ||||||||||| ||||||||||| |||||||||||||||||||||| |||
Sbjct 2502 AGATGGTAAGATATTGATTGATAAACTGCGCGGCAAACAAATAAAGATACTCGAAATAGT 2561
Query 1509 GGATTTGAGAGGCTGCTATGAGAGTTTTGCTTCTAGACTCGATGATAAGAAACAATCTGC 1568
||| ||||| ||| || |||||||||| |||||||||||||||||||||||||||| ||
Sbjct 2562 AGATCTGAGAAGCTTCTCTGAGAGTTTTACTTCTAGACTCGATGATAAGAAACAATCAGC 2621
Query 1569 AGTCATAGGAAGCTTTGAAGAACAAAGGATGAAATGGAACACACCACCAAG 1619
|||||||||||||||||||||||||| || ||||||| ||||||||||||
Sbjct 2622 AGTCATAGGAAGCTTTGAAGAACAAAAGAAAAAATGGAGCACACCACCAAG 2672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61972828615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5