BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18900.1
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488774 jgi|Araly1|488774|fgenesh2_kg.6__1908__AT5G18900.1 1832 0.0
Ahg928254 jgi|Araly1|928254|scaffold_300711.1 848 0.0
> Ahg488774 jgi|Araly1|488774|fgenesh2_kg.6__1908__AT5G18900.1
Length=1219
Score = 1832 bits (992), Expect = 0.0
Identities = 1150/1224 (94%), Gaps = 19/1224 (2%)
Strand=Plus/Plus
Query 1 TCATCACCGTTGAACACTTTCCCGAG-AAAAGC-TCTCTCA---TCTTTTATTTTCCCGG 55
|||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||
Sbjct 1 TCATCACCGTTGAACACTTTCCCGAGAAAAAGCTTCTCTCATCGTCTTTTATTTTCCCGG 60
Query 56 aaaaaaaTAAT-TAAACTTTTACTCTCTTCCGATCTCCTTTCCTTGTACATCTAGATCCA 114
||||||| ||| ||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 AAAAAAAAAATCAAAATTTTTACTCTCTTCCGATCTCCTTTCCTTCTACATCTAGATCCA 120
Query 115 AGCGGTATCGATGGCTCGA-CGTGGATTATTGATT-TCGTTCTTCGCTATCTTCTCCGTC 172
|||| | |||||||||| | |||||||||||| || | |||||| |||||||||||||||
Sbjct 121 AGCGATTTCGATGGCTC-ACCGTGGATTATTG-TTGTTGTTCTTTGCTATCTTCTCCGTC 178
Query 173 CTGCTTCAATCTTCCACTTCTCTGATCAGTTCTTCTAGCGTCTTCGTCAATCCTTCCAAA 232
||||||||||| |||||||| ||||| ||||| |||||||||||| ||||||||||||||
Sbjct 179 CTGCTTCAATCCTCCACTTCCCTGATTAGTTCCTCTAGCGTCTTCATCAATCCTTCCAAA 238
Query 233 GTCAAGCAGGTTTCATCGAAACCCAGGGCGTTTGTGTATGAAGGGTTTCTCACGGAATTG 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GTCAAGCAGGTTTCATCGAAACCCAGGGCGTTTGTGTATGAAGGGTTTCTCACGGAATTG 298
Query 293 GAATGTGATCATATGGTCTCCCTTGCAAAAGCGAGCCTGAAGAGATCTGCTGTTGCTGAT 352
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 299 GAATGTGATCATATGGTTTCTCTTGCAAAAGCGAGCCTGAAGAGATCTGCTGTTGCTGAT 358
Query 353 AATGATAGTGGAGAGAGCAAATTCAGCGAGGTTCGAACCAGCTCTGGCACCTTTATCTCC 412
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 359 AATGATAGTGGAGAGAGCAAATTCAGCGAGGTTCGAACCAGCTCTGGCACGTTTATCCCC 418
Query 413 AAAGGAAAGGATCCCATTGTTTCTGGTATAGAAGATAAGATCTCCACTTGGACATTTCTT 472
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 419 AAAGGAAAGGATCCCATTGTTTCTGGTATAGAAGACAAGATCTCCACTTGGACATTTCTT 478
Query 473 CCAAAAGAAAACGGGGAAGACATTCAGGTATTGAGATACGAGCACGGCCAAAAATACGAT 532
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 479 CCAAAAGAAAACGGGGAAGATATTCAGGTATTGAGATACGAGCACGGACAAAAATACGAT 538
Query 533 GCTCACTTTGATTACTTTCATGACAAAGTCAACATTGTCCGTGGTGGACATCGCATGGCA 592
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 539 GCTCACTTTGACTACTTTCATGACAAAGTCAACATTGTCCGTGGTGGACACCGCATAGCA 598
Query 593 ACAATTCTTATGTATCTATCCAATGTGACGAAAGGTGGAGAAACTGTATTCCCTGATGCA 652
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 599 ACGATTCTTATGTATCTATCCAATGTGACGAAAGGTGGAGAAACCGTATTCCCTGATGCA 658
Query 653 GAGATACCTTCTCGCCGAGTACTATCTGAAAATAAAGAAGACCTTTCTGATTGTGCCAAG 712
||| ||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||
Sbjct 659 GAGGTACCTTCTCGCCGAGTACTCTCTGAAAACAAAGAAGATCTTTCTGATTGTGCTAAG 718
Query 713 AGAGGAATTGCTGTGAAACCAAGGAAAGGGGATGCTTTGTTGTTCTTCAACCTCCACCCA 772
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGAGGAATCGCCGTGAAACCAAGGAAAGGGGATGCTTTGTTGTTCTTCAACCTCCACCCA 778
Query 773 GACGCAATCCCGGACCCATTGAGCCTTCACGGTGGATGTCCTGTGATAGAAGGAGAGAAA 832
|||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 779 GACGCAATTCCAGACCCATTGAGCCTTCACGGTGGATGTCCCGTGATCGAAGGAGAGAAA 838
Query 833 TGGTCGGCAACCAAGTGGATCCACGTAGACTCATTTGATAGGATCGTGACACCAAGCGGA 892
||||||||||| |||||||||||||| |||||||| |||| ||| |||||||||||||||
Sbjct 839 TGGTCGGCAACAAAGTGGATCCACGTGGACTCATTCGATAAGATTGTGACACCAAGCGGA 898
Query 893 AACTGCACGGATATGAACGAGAGCTGTGAGAGATGGGCAGTTCTTGGGGAATGCACAAAG 952
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AACTGCACGAATATGCACGAGAGCTGTGAGAGATGGGCAGTTCTTGGGGAATGCACAAAG 958
Query 953 AATCCAGAGTACATGGTTGGAACTACAGAGCTTCCTGGCTATTGCAGGCGA-AGCTGTAA 1011
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 959 AATCCAGAGTACATGGTTGGAACTACAGAGCTTCCTGGCTATTGCAGGC-ATAGCTGTAA 1017
Query 1012 GGCTTGCTAGACTTTATTTTACCTCTTCTT-TGTCTTATTATGTGCCTTTA--CTCTCAA 1068
|||||| ||||||| ||||||||||||||| | |||| || |||||| | | |||||||
Sbjct 1018 GGCTTGTTAGACTTGATTTTACCTCTTCTTCT-TCTTGTTCTGTGCCATAAAACTCTCAA 1076
Query 1069 AGTTTTCTGtttttttCCGAGTTTCTCT-TAGAGTTGTTGTCGTTGATGAAATTTGTTCT 1127
|||||||||||||||| || |||||| | |||||||||||||||| ||||| ||||||||
Sbjct 1077 AGTTTTCTGTTTTTTTTCGTGTTTCT-TGTAGAGTTGTTGTCGTTAATGAACTTTGTTCT 1135
Query 1128 AAGGGGAGTTCTGTAAAACTATA-CTGTTCCTGAAAAGAATATAATGTAAACACATAGAT 1186
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1136 AAGGGGAGTTTTGTAAAACTATAACTGTTCCTGAAAAGAATATAATGTAAACACATAGAT 1195
Query 1187 TCAGTCAAATACTTAATAGGTTAT 1210
|||||||||||||| |||||||||
Sbjct 1196 TCAGTCAAATACTTTATAGGTTAT 1219
> Ahg928254 jgi|Araly1|928254|scaffold_300711.1
Length=940
Score = 848 bits (459), Expect = 0.0
Identities = 765/910 (84%), Gaps = 31/910 (3%)
Strand=Plus/Plus
Query 122 TCGATGGCTCGACGT-GGATTATTGATTTCGTTCTTCGCTATCTT-CTCCGTCCTGCTTC 179
|||||| |||| | | ||||| ||| || |||| ||||||| || || |||||||||||
Sbjct 24 TCGATGTCTCGGC-TCGGATTGTTG--TT-GTTCGTCGCTATATTCCT-CGTCCTGCTTC 78
Query 180 AATCTTCCACTTCTCTGATCAGTTCTTCTAGCGTCT-TCGTCAATCCTTCCAAAGTCAAG 238
|||||||||||| |||||| |||||| | || ||| || |||| ||||| ||||||||
Sbjct 79 AATCTTCCACTTGTCTGATTAGTTCTCCAAG-TTCTATCATCAACCCTTCTAAAGTCAAA 137
Query 239 CAGGTTTCATCGAAACCCAGGGCGTTTGTGTATGAAGGGTTTCTCACGGAATTGGAATGT 298
|||||||| ||||| |||||||| |||||||||||||| ||| | ||||| |||||||||
Sbjct 138 CAGGTTTCTTCGAAGCCCAGGGCATTTGTGTATGAAGGTTTTTTGACGGACTTGGAATGT 197
Query 299 GATCATATGGTCTCCCTTGCAAAAGCGAGCCTGAAGAGATCTGCTGTTGCTGATAATGAT 358
|||||| | |||||||||| |||| || ||| |||||||||| ||||||||||| |||
Sbjct 198 GATCATCTAATCTCCCTTGCGAAAGAGAATCTGCAGAGATCTGCGGTTGCTGATAACGAT 257
Query 359 AGTGGAGAGAG-CAAATTCAGCGAGGTTCGAACCAGCTCTGGCACCTTTATCTCCAAAGG 417
| ||| ||||| | || |||| || ||||| |||||||| ||||| ||||||||||||||
Sbjct 258 AATGGCGAGAGTC-AAGTCAGTGACGTTCGTACCAGCTCCGGCACGTTTATCTCCAAAGG 316
Query 418 AAAGGATCCCATTGTTTCTGGTATAGAAGATAAGATCTCCACTTGGACATTTCTTCCAAA 477
||||||||| |||||||| |||||||| || ||| |||| || |||||||| || |||||
Sbjct 317 AAAGGATCCTATTGTTTCCGGTATAGAGGACAAGCTCTCAACATGGACATTCCTCCCAAA 376
Query 478 AGAAAACGGGGAAGACATTCAGGTATTGAGATACGAGCACGGCCAAAAATACGATGCTCA 537
|||||||||||||||| |||||||||||||||| |||||||| || ||||| ||||| ||
Sbjct 377 AGAAAACGGGGAAGACCTTCAGGTATTGAGATATGAGCACGGTCAGAAATATGATGCCCA 436
Query 538 CTTTGATTACTTTCATGACAAAGTCAACATTGTCCGTGGTGGACATCGCATGGCAACAAT 597
|||||| ||||| || |||||||||||||| | |||||||||||| ||||| ||||| |
Sbjct 437 CTTTGACTACTTCCACGACAAAGTCAACATCGCCCGTGGTGGACACCGCATAGCAACGGT 496
Query 598 TCT-TATGTATCTATCCAATGTGACGAAA-GGTGGAGAAACTG-TATTCCCTGATGCAGA 654
||| | |||||||||| ||||| || ||| ||||||||||| | | ||||| |||||| |
Sbjct 497 TCTCT-TGTATCTATCTAATGTCAC-AAAGGGTGGAGAAACGGTTTTTCCC-GATGCACA 553
Query 655 -G-ATACCTTCTCGCCGAGT-ACTATCTGAAAATAAAGAAGACCTTTCTGATTGTGCCAA 711
| ||| ||| ||||| | || ||||| || ||||| || |||||||||||||| ||
Sbjct 554 GGAATA--TTCACGCCG-CTCGCTTTCTGAGAACAAAGACGATCTTTCTGATTGTGCAAA 610
Query 712 GAGAGGAATTGCTGTGAAACC-AAGGAAAGGGGATGCTTTGTTGTTCTTCAACCTCCACC 770
|| |||||| ||||||||||| || ||||||| ||||| ||||||||||||||||||| |
Sbjct 611 GAAAGGAATCGCTGTGAAACCGAA-GAAAGGGAATGCTCTGTTGTTCTTCAACCTCCAAC 669
Query 771 CAGACGCAATCCCGGA-CCCATTGAGCCTTCACGGTGGATGTCCTGTGATAGAAGGAGAG 829
|||||||||||| || ||| || ||||||||||| || ||||| ||||| |||||||||
Sbjct 670 AAGACGCAATCCCAGATCCC-TTTAGCCTTCACGGAGGTTGTCCAGTGATCGAAGGAGAG 728
Query 830 AAATGGTCGGCAACCAAGTGGATCCACGTAGACTCATTTGATAGGATCGTGACACCAAG- 888
||||||||||| || |||||||||||||| |||||||| |||| ||| ||||| || |
Sbjct 729 AAATGGTCGGCTACAAAGTGGATCCACGTGGACTCATTCGATAAGATATTGACA-CATGA 787
Query 889 CGGAAACTGCACGGATATGAACGAGAGCTGTGAGAGATGGGCAGTTCTTGGGGAATGCAC 948
|| ||||| ||||| |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 788 TGGTAACTGTACGGACGTGAACGAGAGCTGTGAGAGATGGGCAGTGCTTGGAGAATGCGG 847
Query 949 AAAGAATCCAGAGTACATGGTTGGAACTACAGAGCTTCCTGGCTATTGCAGGCGA-AGCT 1007
|||||| |||||||| |||||||||||| ||||||| ||||| ||||||| | | ||||
Sbjct 848 AAAGAACCCAGAGTATATGGTTGGAACTCCAGAGCTCCCTGGAAATTGCAGAC-ATAGCT 906
Query 1008 GTAAGGCTTG 1017
|||| |||||
Sbjct 907 GTAAAGCTTG 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45366271230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5