BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18910.1
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941423 jgi|Araly1|941423|scaffold_601967.1 2571 0.0
Ahg355584 jgi|Araly1|355584|fgenesh1_pg.C_scaffold_7002757 209 5e-53
> Ahg941423 jgi|Araly1|941423|scaffold_601967.1
Length=1590
Score = 2571 bits (1392), Expect = 0.0
Identities = 1528/1593 (96%), Gaps = 12/1593 (1%)
Strand=Plus/Plus
Query 2 TCTCATTTCTTGTCTCCAATCCATGGAAGGCCTTCGAGACTCATCGTCACAAACTATCTC 61
|||||||| |||||| ||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1 TCTCATTTTTTGTCTTCAATCCATGGAAGGCCTTCGAGACTCATCCTCACAAACTCTCTC 60
Query 62 TTCCACGACGTCGTCTTCTTCGTCTCCGTCCTGCGATGTAGACGTTGACAATCGTGGAAA 121
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 61 TTCCACGACGTCGTCTTCTTCGTCTCCCTCCTGCGATGTAGACGTTGAGAATCGTGGAAA 120
Query 122 ACAATTAACTCCT---TCTACAAGACGATCTCGAGCCGGCTTCTCTGATTCTTTCTCTTC 178
| ||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 121 AAAATTAACTCCTCCATCTACAAGAAGATCTCGAGCCGGTTTCTCTGATTCTTTCTCTTC 180
Query 179 TCATGATTTATCATCATTCTGTCGAGATGAAGAAGTAAAAACATTCTGCCCCATCAAATC 238
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 181 TCATGATTTATCATCATTCTGTCGAGATGAAGAAATAACAACATTCTGCCCCATCAAATC 240
Query 239 GGAATCAGACGATGAATTATTAAGGAGCATAGAAGCCGAAACTTCATCTTCCGTGGTGAG 298
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 GGAATCAGACGATGACTTATTAAGGAGCATAGAATCCGAAACTTCATCTTCCGTGGTGAG 300
Query 299 CACGTCAG----A-C-tcatcagaaactcatcaccatcaccatcatcatcatTCGTCTGG 352
|||||||| | | ||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 301 CACGTCAGACTCATCATCATCAGAAGCTCATCACCATCACCGTCATCATCATTCGTCTGG 360
Query 353 AGGTCCCAACAACGGTCACTGGAGAAGAGGTTTCTTCCGTTTGCTTAAGAAAGGATCATC 412
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 361 AGGTCCCAACAACGGTCACTGGAGAAGAGGTTTCTTCCGATTACTTAAGAAAGGATCATC 420
Query 413 CGCAATGCCATTCAACACGTTCACACCTCTCAAAGGAGTTCCGAAACTGACCAGACGGAA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGCAATGCCATTCAACACGTTCACACCTCTCAAAGGAGTTCCGAAACTGACCAGACGGAA 480
Query 473 GAGCAAACGCATAAGGGACAACATGGTTCCCGTTATACCTGCTCTTGACACTGATCACTT 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 GAGCAAACGCATAAGGGACAACATGGTTCCCGTTATACCTGCTCTTGACACTGATGACTT 540
Query 533 GTTCTATTTCAAACCCTCCTGGAGGAACTTCTCTCTCCGAGATATTCAGACCGCGACAAA 592
|||||| ||||||||||||||||||||||||||||||| ||||||||| || || |||||
Sbjct 541 GTTCTACTTCAAACCCTCCTGGAGGAACTTCTCTCTCCAAGATATTCAAACTGCCACAAA 600
Query 593 TGACTACAGCCGTGAAAATCTGATCGGAGAAGGAGGATATGCGGAGGTGTATAAGGGACA 652
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 601 TGACTACAGCCGTGAAAATCTGATCGGAGAAGGAGGATATGCAGAGGTGTATAAGGGACA 660
Query 653 AATGGCAGATGGGCAGATAGTAGCGATAAAGAAGTTGACTAGAGGTTCTGCAGAAGAGAT 712
|||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 661 AATGCCAGATGGGCAAATAGTAGCTATAAAGAAGTTGACTAGAGGTTCTGCAGAAGAGAT 720
Query 713 GACGATGGATTATCTGTCCGAACTAGGGATCATTGTTCATGTAGATCATCCAAACATTGC 772
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 721 GACGATGGATTATCTGTCCGAACTTGGGATCATAGTTCATGTAGATCATCCAAACATTGC 780
Query 773 TAAGCTTATTGGTTATTGTGTTGAAGGAGGAATGCATCTTGTTCTTGAGCTATCTCCTAA 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TAAGCTTATTGGTTATTGTGTTGAAGGAGGAATGCATCTTGTTCTTGAGCTATCTCCTAA 840
Query 833 TGGAAGCCTTGCTTCTTTGCTCTACGAGGCGAAGGAGAAACTGAATTGGAGCATGAGATA 892
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 841 TGGAAGCCTTGCTTCTTTGCTCTACGAGGCGAAGGGGAAATTGAATTGGAGCATGAGATA 900
Query 893 CAAAGTGGCGATGGGAACAGCAGAGGGACTCTACTATCTCCATGAAGGTTGTCAGAGAAG 952
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 901 CAAAGTGGCCATGGGAACAGCAGAGGGACTGTACTATCTCCATGAAGGTTGTCAGAGAAG 960
Query 953 AATCATTCATAAAGACATTAAAGCTTCTAACATTCTTCTCACTCAGAACTTTGAGGCTCA 1012
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 961 GATCATTCATAAAGACATTAAAGCTTCTAACATCCTTCTCACTCAGAACTTTGAGGCTCA 1020
Query 1013 GATATCGGATTTCGGGCTAGCGAAATGGCTACCAGACCAATGGACTCACCATACTGTATC 1072
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1021 GATATCTGATTTCGGGCTAGCGAAATGGCTACCGGACCAATGGACTCACCATACTGTATC 1080
Query 1073 AAAAGTTGAAGGAACATTCGGTTACCTTCCGCCAGAGTTTTTCATGCATGGGATAGTAGA 1132
||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 1081 GAAAGTCGAAGGAACATTCGGTTACCTTCCACCGGAGTTCTTCATGCATGGGATAGTAGA 1140
Query 1133 CGAGAAAACAGACGTATATGCTTATGGTGTCCTGCTTCTCGAGCTCATTACCGGTAGACA 1192
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1141 CGAAAAAACAGACGTATATGCTTATGGTGTCCTGCTTCTAGAGCTCATTACCGGTAGACA 1200
Query 1193 AGCCCTCGACAGCTCACAACATAGCATTGTCATGTGGGCTAAGCCATTGATCAAAGAGAA 1252
||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1201 AGCTCTCGACAGCTCACAACATAGCATTGTCATGTGGGCCAAGCCATTAATCAAAGAGAA 1260
Query 1253 CAAGATCAAACAACTTGTTGATCCGATTCTGGAAGATGACTACGACGTAGAAGAGTTGGA 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CAAGATCAAACAACTTGTTGATCCGATTCTGGAAGATGACTACGACGTAGAAGAGTTGGA 1320
Query 1313 CCGTCTTGTCTTCATAGCTTCCTTGTGTATACATCAAACCTCCATGAACCGGCCTCAGAT 1372
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1321 CCGTCTTGTCTTCATAGCTTCCTTGTGCATACACCAAACCTCCATGAACCGGCCTCAGAT 1380
Query 1373 GAGCCAGGTTGTGGAGATTCTGAGGGGAGACAAGTGCAGCTTAGATAAGCTAAGAGAGCG 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GAGCCAGGTTGTGGAGATTCTGAGGGGAGACAAGTGCAGCTTAGATAAGCTAAGAGAGCG 1440
Query 1433 AGAAAACTCCAAACTCCAGAGGACTTACTCTGAAGAACTATTGGATAACGAAGAATACAA 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AGAAAACTCCAAACTCCAGAGGACTTACTCTGAAGAACTATTGGATAACGAAGAATACAA 1500
Query 1493 CTCGACAAGATATTTAAACGATATTAATCGACACATGGAGACCGTTCTCGGAACATCTAA 1552
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1501 CTCGACACGATATTTAAACGATATTCATCGACACATGGAGACCGTTCTCGGAACATCTAA 1560
Query 1553 GGATTAATTCTGAAATGTCCTACTTGCTAAATG 1585
||||| || ||||||||||| ||||||||||
Sbjct 1561 GGATTC-TT--GAAATGTCCTAGTTGCTAAATG 1590
> Ahg355584 jgi|Araly1|355584|fgenesh1_pg.C_scaffold_7002757
Length=1215
Score = 209 bits (113), Expect = 5e-53
Identities = 391/519 (75%), Gaps = 44/519 (8%)
Strand=Plus/Plus
Query 759 CATCCAAACATTGCTAAGCTTATT-GGTTATTGTGTTGAAGGAGGAATGCATCTTGTTCT 817
||||||||||| ||||||||| || || ||| | ||||||||||||||||||||||||||
Sbjct 487 CATCCAAACATAGCTAAGCTT-TTAGGCTATGGGGTTGAAGGAGGAATGCATCTTGTTCT 545
Query 818 TGAGCTATCTCCTAATGGAAGCCTT-GCTTCTTTGCTCTACGAGGCGAAGGAGAA-ACTG 875
|||| |||| ||| |||| ||| || |||||| |||| || | | |||||||| | ||
Sbjct 546 TGAGTTATCACCTCATGGCAGC-TTAGCTTCTATGCTTTATAACTCCAAGGAGAAGA-TG 603
Query 876 AATTGGAGCATGAGATACAA-AGTGGCGAT-GGGAACAGCAGAGGGACTC-TACTATCT- 931
|| ||||| || || ||||| | | || || |||| || ||||| || | |||||
Sbjct 604 AAATGGAGTATCAGGTACAAGA-TAGC-ATTGGGAGTTGCGGAGGGTCTGGTT-TATCTA 660
Query 932 C-CATGAAGGTTGTCAGAGAAGAATCATTCATAAAGACATTAAAGCTTCTAACATTCTTC 990
| || || || ||||| || ||||| || |||| ||| || ||||| | ||||||||||
Sbjct 661 CACA-GA-GGATGTCACAGGAGAATTATACATAGAGATATCAAAGCCGCAAACATTCTTC 718
Query 991 TCACTCA-GAACTTTGAGGCTCAGATATCG-GA-TTTCGGGCTAGCGAAATGGCTACCAG 1047
|||| || || ||| | ||||||||| | || ||| || || |||| ||| |||| |
Sbjct 719 TCACACATGATTTTTC-GCCTCAGATAT-GTGACTTT-GGACTCTCGAAGTGGTTACCTG 775
Query 1048 ACCAAT-GGACTCACCATACTGTATCAAAAGTT-GAAGGAACATTCGGTTACCTTCCGCC 1105
| ||| |||| ||||||| ||| || || ||| || || |||||||| || ||| | ||
Sbjct 776 AA-AATTGGACACACCATATTGTTTCCAA-GTTCGAGGGCACATTCGGATATCTTGCTCC 833
Query 1106 AGAGTTTTTCATGCATGGGATAGTAGACGAGAAA-ACAGACGTATAT-GCTTATGG-TGT 1162
||||| || | |||||||||||||| || ||| || || |||| | || | ||| |||
Sbjct 834 AGAGTACTTAACACATGGGATAGTAGATGA-AAAGACCGATGTAT-TCGCCT-TGGGTGT 890
Query 1163 CCTGCTT-CTCGAGCTCATTACCGGTAGACAAGCCCTCGAC-AGCTCACAA-CATAG-CA 1218
|| || || || || |||| || |||| ||| ||||| | ||| ||| || || |
Sbjct 891 ACTT-TTACTAGAACTTGTTACTGGAAGACGAGCTCTCGATTA-CTC-CAAGCAAAGTC- 946
Query 1219 TTGT-CATGTGGGCTAAGCCATTGATCAAAGA-GAACAA 1255
|||| | | |||||||| |||||||| || || ||||||
Sbjct 947 TTGTTC-TATGGGCTAAACCATTGATGAA-GAAGAACAA 983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64715326255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5