BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G18920.1

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg893810 jgi|Araly1|893810|Al_scaffold_0006_1806                    370    5e-102


> Ahg893810 jgi|Araly1|893810|Al_scaffold_0006_1806
Length=231

 Score =  370 bits (200),  Expect = 5e-102
 Identities = 221/230 (96%), Gaps = 6/230 (3%)
 Strand=Plus/Plus

Query  36   AGAAAGTGACGGAGAATCCCAATTCCGAGACGCAACCTTCTCCTCCTCCTCCGCCGAATC  95
            ||| |||||||||||||||||||||||||||||||      |||||||||||||||||||
Sbjct  8    AGAGAGTGACGGAGAATCCCAATTCCGAGACGCAA------CCTCCTCCTCCGCCGAATC  61

Query  96   ATCAAATGGATGCAGACGACGATGACGAGAATGTGAAACAGCTCAAGGAGTGTTCTTCTC  155
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  62   ATCAAATGGATGCAGACGACGACGACGAGAATGTGAAACAGCTCAAGGAGTGTTCTTCTC  121

Query  156  TCTATTTATCTTTACAGGATTGTCTTGTTGATAGTAATAGGGACTGGAAATCTTGCCAAA  215
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  122  TCTATTTATCTTTACAGGATTGTCTTGTTGATAGCAATAGGGACTGGAAATCTTGCCAAA  181

Query  216  AACATGTTCAAGCTTTGAAGGAATGTCATGAAAGGAGAATGAAGAAATGA  265
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  182  AACATGTTCAAGCTTTGAAGGAATGTCATGAAAGGAGAATGAAGAAATGA  231



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17704193296


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5